Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10679 Brassica carinata HOM05D004301 ORTHO05D005124 1.3e-73 279.6 138 100.0
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 6.4e-09 64.7 47 70.2
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 1.1e-08 63.9 56 64.3
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 1.1e-08 63.9 98 39.8
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 1.4e-08 63.5 47 70.2
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.4e-08 63.5 98 41.8
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 1.4e-08 63.5 44 72.7
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 1.9e-08 63.2 44 72.7
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 1.9e-08 63.2 44 72.7
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 1.9e-08 63.2 44 72.7
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 1.9e-08 63.2 44 72.7
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 1.9e-08 63.2 44 72.7
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 1.9e-08 63.2 44 72.7
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 1.9e-08 63.2 44 72.7
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 1.9e-08 63.2 47 68.1
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 1.9e-08 63.2 44 72.7
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 2.4e-08 62.8 44 70.5
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.4e-08 62.8 44 72.7
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 3.2e-08 62.4 98 41.8
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.2e-08 62.4 44 70.5
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.2e-08 62.4 44 70.5
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 3.2e-08 62.4 44 70.5
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 4.1e-08 62.0 44 72.7
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 4.1e-08 62.0 44 70.5
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 4.1e-08 62.0 112 38.4
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 5.4e-08 61.6 44 68.2
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 5.4e-08 61.6 44 70.5
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 7.1e-08 61.2 44 70.5
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 7.1e-08 61.2 44 68.2
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 7.1e-08 61.2 44 70.5
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 7.1e-08 61.2 44 70.5
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 7.1e-08 61.2 110 40.9
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 9.2e-08 60.8 44 68.2
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 1.2e-07 60.5 44 70.5
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 1.2e-07 60.5 39 74.4
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 1.2e-07 60.5 44 68.2
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 1.6e-07 60.1 44 68.2
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 1.6e-07 60.1 44 68.2
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 1.6e-07 60.1 44 68.2
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.1e-07 59.7 44 65.9
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.1e-07 59.7 44 65.9
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.1e-07 59.7 44 65.9
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 2.1e-07 59.7 44 65.9
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 2.1e-07 59.7 44 65.9
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 2.1e-07 59.7 56 57.1
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 2.1e-07 59.7 44 65.9
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 2.1e-07 59.7 44 68.2
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 2.1e-07 59.7 44 65.9
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 2.1e-07 59.7 44 68.2
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 2.7e-07 59.3 98 39.8
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 2.7e-07 59.3 44 65.9
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 2.7e-07 59.3 44 65.9
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 2.7e-07 59.3 44 65.9
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 3.5e-07 58.9 44 68.2
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 3.5e-07 58.9 44 63.6
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 3.5e-07 58.9 102 43.1
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 3.5e-07 58.9 44 65.9
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 4.6e-07 58.5 44 63.6
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 4.6e-07 58.5 44 63.6
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 4.6e-07 58.5 44 63.6
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 4.6e-07 58.5 44 63.6
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 4.6e-07 58.5 44 65.9
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 4.6e-07 58.5 97 40.2
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 4.6e-07 58.5 44 63.6
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 4.6e-07 58.5 44 63.6
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 4.6e-07 58.5 44 63.6
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 4.6e-07 58.5 44 65.9
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 6.0e-07 58.2 44 68.2
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 6.0e-07 58.2 44 63.6
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 6.0e-07 58.2 98 39.8
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 7.8e-07 57.8 44 65.9
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 7.8e-07 57.8 103 32.0
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 7.8e-07 57.8 44 61.4
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 1.0e-06 57.4 43 65.1
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 1.0e-06 57.4 44 63.6
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 1.0e-06 57.4 44 63.6
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 1.0e-06 57.4 98 40.8
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.0e-06 57.4 44 63.6
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.3e-06 57.0 98 39.8
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.3e-06 57.0 44 63.6
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.3e-06 57.0 44 63.6
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.3e-06 57.0 44 63.6
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.3e-06 57.0 43 65.1
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 1.3e-06 57.0 44 63.6
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.7e-06 56.6 44 61.4
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 1.7e-06 56.6 44 61.4
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.7e-06 56.6 44 61.4
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 2.3e-06 56.2 44 61.4
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.3e-06 56.2 44 65.9
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 2.3e-06 56.2 44 63.6
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.0e-06 55.8 43 65.1
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 3.0e-06 55.8 44 61.4
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 3.0e-06 55.8 44 59.1
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 3.0e-06 55.8 44 61.4
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 3.9e-06 55.5 42 64.3
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 3.9e-06 55.5 44 61.4
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 5.1e-06 55.1 44 63.6
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 5.1e-06 55.1 39 66.7
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 5.1e-06 55.1 45 66.7
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 5.1e-06 55.1 44 63.6
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 6.6e-06 54.7 44 59.1
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 6.6e-06 54.7 44 59.1
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 6.6e-06 54.7 42 61.9
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 6.6e-06 54.7 44 61.4
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 8.6e-06 54.3 44 59.1
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 8.6e-06 54.3 44 61.4
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 8.6e-06 54.3 44 59.1
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 8.6e-06 54.3 39 66.7


User provided reference genes

Program Settings