Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 1.2e-236 822.8 410 100.0
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 2.2e-227 792.0 413 95.2
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 2.1e-225 785.4 411 95.4
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 3.4e-223 778.1 408 94.4
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 2.2e-222 775.4 411 93.7
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 2.4e-221 771.9 434 90.3
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 2.0e-220 768.8 411 93.4
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 7.7e-220 766.9 441 88.4
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 5.0e-219 764.2 412 92.7
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 3.3e-218 761.5 441 88.9
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 1.3e-211 739.6 386 94.6
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 3.6e-209 731.5 410 88.5
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 6.8e-200 700.7 423 82.7
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 1.7e-182 642.9 393 81.4
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 1.7e-182 642.9 407 78.9
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 2.4e-181 639.0 411 77.9
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 4.2e-181 638.3 389 81.2
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 5.4e-181 637.9 393 80.2
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 2.1e-180 636.0 405 78.5
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 6.6e-179 630.9 410 76.1
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 1.5e-178 629.8 394 78.2
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 1.5e-178 629.8 412 77.2
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 1.5e-178 629.8 393 79.1
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 2.5e-178 629.0 399 77.2
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 7.3e-178 627.5 392 79.3
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 7.3e-178 627.5 393 78.4
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 9.6e-178 627.1 412 76.5
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 1.3e-177 626.7 393 79.1
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 2.8e-177 625.5 411 76.9
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 3.6e-177 625.2 390 79.7
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 4.8e-177 624.8 402 78.4
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 1.1e-176 623.6 412 74.8
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 2.4e-176 622.5 396 77.8
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 1.2e-175 620.2 393 77.4
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 2.0e-175 619.4 393 77.9
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 2.6e-175 619.0 412 75.5
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 3.4e-175 618.6 393 77.1
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 3.4e-175 618.6 393 76.8
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 3.4e-175 618.6 392 77.3
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 3.4e-175 618.6 393 77.1
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 5.8e-175 617.8 405 75.8
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 9.9e-175 617.1 393 76.8
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 9.9e-175 617.1 410 75.9
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 1.3e-174 616.7 434 72.4
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 1.7e-174 616.3 393 78.4
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 1.7e-174 616.3 386 78.2
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 2.2e-174 615.9 393 77.9
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 1.9e-173 612.8 400 75.8
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 3.2e-173 612.1 393 77.9
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 9.3e-173 610.5 386 78.2
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 2.1e-172 609.4 394 76.4
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 1.3e-171 606.7 375 79.7
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 5.6e-170 601.3 423 72.1
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 1.1e-168 597.0 408 73.5
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 3.8e-166 588.6 393 76.1
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 3.8e-166 588.6 381 76.9
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 4.2e-165 585.1 365 79.5
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 5.4e-165 584.7 372 76.9
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 1.6e-164 583.2 449 66.6
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 2.1e-164 582.8 428 68.9
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 3.5e-164 582.0 405 72.6
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 1.0e-163 580.5 395 74.2
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 1.1e-162 577.0 407 71.3
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 5.6e-162 574.7 358 79.9
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 2.0e-159 566.2 354 79.1
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 1.1e-157 560.5 380 75.0
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 2.7e-156 555.8 530 58.1
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 5.1e-155 551.6 405 69.9
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 1.9e-154 549.7 402 71.4
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 2.5e-154 549.3 406 68.7
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 2.5e-154 549.3 402 71.1
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 5.5e-149 531.6 401 66.1
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 9.3e-149 530.8 400 68.8
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 1.2e-148 530.4 345 78.3
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 7.4e-146 521.2 400 67.2
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 4.8e-145 518.5 440 62.3
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 4.1e-144 515.4 385 69.1
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 5.9e-143 511.5 378 70.9
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 7.7e-143 511.1 385 66.0
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 5.0e-142 508.4 401 65.6
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 1.4e-139 500.4 407 65.6
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 3.0e-139 499.2 408 64.7
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 1.5e-138 496.9 391 66.2
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 2.0e-135 486.5 404 64.4
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 7.7e-135 484.6 293 82.6
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.2e-134 483.0 412 63.6
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 1.9e-133 479.9 411 61.6
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 4.2e-133 478.8 357 70.0
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.5e-130 470.3 398 62.6
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 8.5e-126 454.5 333 71.2
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 2.6e-119 433.0 301 73.8
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 3.2e-117 426.0 403 56.1
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 9.1e-112 407.9 394 54.6
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 3.8e-110 402.5 256 78.5
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 1.2e-106 391.0 457 48.8
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 2.9e-102 376.3 257 73.9
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 6.6e-102 375.2 257 74.3
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 3.2e-88 329.7 201 81.1
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.7e-81 307.4 207 76.3
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 3.2e-80 303.1 187 81.3
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 6.0e-79 298.9 204 71.1
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 2.0e-74 283.9 225 70.7
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 2.0e-74 283.9 225 70.7
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 2.0e-74 283.9 225 70.7
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 1.7e-73 280.8 195 75.9
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 2.1e-71 273.9 530 36.8
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.3e-70 271.2 172 78.5
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 2.3e-70 270.4 185 71.4
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 4.3e-69 266.2 185 69.7
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 7.3e-69 265.4 228 68.0
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 1.8e-67 260.8 186 68.8
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 2.2e-65 253.8 155 80.6
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 6.4e-65 252.3 337 45.4
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 6.4e-65 252.3 156 80.1
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 3.2e-64 250.0 151 80.8
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 7.8e-63 245.4 153 78.4
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 1.2e-58 231.5 174 67.2
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 2.1e-55 220.7 124 83.9
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 2.9e-49 200.3 162 61.7
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 2.4e-43 180.6 130 67.7
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 1.5e-42 177.9 105 81.9
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 2.2e-41 174.1 108 82.4
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 3.7e-36 156.8 99 83.8
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 4.8e-36 156.4 99 83.8
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 6.3e-36 156.0 119 66.4
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 2.4e-35 154.1 105 71.4
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 6.9e-35 152.5 120 68.3
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 1.9e-32 144.4 144 52.8
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 2.2e-28 131.0 74 78.4
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 6.5e-25 119.4 121 55.4
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 3.6e-23 113.6 73 74.0
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 7.4e-21 105.9 86 59.3
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 8.2e-20 102.4 62 75.8
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 1.7e-17 94.7 73 65.8
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 2.2e-17 94.4 182 39.6
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 3.2e-16 90.5 161 36.6
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 2.3e-14 84.3 57 70.2
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 2.0e-13 81.3 132 40.9


User provided reference genes

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