Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 1.6e-138 496.1 250 100.0
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 1.2e-130 469.9 250 94.8
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 1.2e-130 469.9 250 94.8
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 1.0e-129 466.8 250 94.0
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 2.1e-127 459.1 255 92.5
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 4.7e-127 458.0 250 92.4
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 8.0e-127 457.2 255 92.2
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 8.0e-127 457.2 253 90.9
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 3.0e-126 455.3 250 92.4
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 1.6e-122 443.0 251 89.2
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 1.3e-121 439.9 250 88.8
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 9.5e-120 433.7 247 88.7
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 1.2e-119 433.3 250 89.2
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 8.0e-119 430.6 258 85.7
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 3.0e-118 428.7 250 88.0
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 3.0e-118 428.7 250 88.0
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 3.7e-116 421.8 247 85.8
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 2.3e-113 412.5 250 82.0
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.2e-103 380.2 256 76.2
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 6.0e-98 361.3 245 71.8
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 2.0e-93 346.3 232 71.1
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 1.7e-92 343.2 255 66.7
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 3.8e-92 342.0 222 80.6
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 7.1e-91 337.8 246 66.3
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.2e-90 337.0 235 70.6
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.2e-90 337.0 236 70.8
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 1.3e-89 333.6 242 66.5
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 2.3e-89 332.8 246 67.9
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 3.9e-89 332.0 249 65.5
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 3.9e-89 332.0 220 70.5
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 6.6e-89 331.3 246 67.9
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 1.1e-88 330.5 225 70.2
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 1.9e-88 329.7 244 66.0
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 3.3e-88 328.9 248 65.3
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 3.3e-88 328.9 214 71.0
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 4.3e-88 328.6 246 66.7
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.3e-88 328.6 246 66.7
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.3e-88 328.6 246 66.7
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 4.3e-88 328.6 224 70.5
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 4.3e-88 328.6 202 73.3
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 4.3e-88 328.6 205 73.2
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 4.3e-88 328.6 205 73.2
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 5.6e-88 328.2 220 68.6
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 9.6e-88 327.4 248 65.7
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 1.2e-87 327.0 242 64.9
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 1.6e-87 326.6 231 68.4
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 2.1e-87 326.2 246 65.4
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 2.8e-87 325.9 206 72.8
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 3.6e-87 325.5 248 63.7
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 6.2e-87 324.7 248 65.7
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 6.2e-87 324.7 246 65.0
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 6.2e-87 324.7 246 64.2
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 1.4e-86 323.6 204 73.0
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 1.4e-86 323.6 246 63.8
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 1.8e-86 323.2 240 65.8
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.8e-86 323.2 240 65.8
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 1.8e-86 323.2 228 68.4
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 2.4e-86 322.8 203 73.4
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.4e-86 322.8 245 65.3
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 3.1e-86 322.4 200 73.5
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 3.1e-86 322.4 206 71.8
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 5.2e-86 321.6 246 64.2
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 5.2e-86 321.6 249 63.1
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 6.9e-86 321.2 221 67.4
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 6.9e-86 321.2 232 68.1
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 6.9e-86 321.2 203 73.9
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 6.9e-86 321.2 242 64.9
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.5e-85 320.1 234 67.9
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.5e-85 320.1 260 61.2
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 1.5e-85 320.1 210 70.0
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 3.4e-85 318.9 247 64.4
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 4.4e-85 318.5 246 64.2
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 4.4e-85 318.5 200 72.5
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 5.8e-85 318.2 206 72.3
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 5.8e-85 318.2 210 70.0
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 7.6e-85 317.8 213 68.1
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 7.6e-85 317.8 252 62.7
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 9.9e-85 317.4 222 71.6
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 1.3e-84 317.0 226 67.3
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 2.2e-84 316.2 231 68.0
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 2.2e-84 316.2 247 62.3
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 2.2e-84 316.2 200 72.5
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 2.2e-84 316.2 232 65.5
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 2.9e-84 315.8 251 61.4
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 4.9e-84 315.1 204 71.6
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 7.1e-83 311.2 249 63.1
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 1.6e-82 310.1 254 61.0
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 1.6e-82 310.1 240 61.7
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 2.1e-82 309.7 202 70.8
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 3.5e-82 308.9 231 62.8
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 4.6e-82 308.5 231 62.8
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 1.7e-81 306.6 203 70.0
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 6.6e-81 304.7 220 64.1
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 3.3e-80 302.4 252 61.9
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 5.6e-80 301.6 246 62.2
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 9.6e-80 300.8 209 66.0
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 1.3e-79 300.4 218 65.1
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 1.6e-79 300.1 201 67.7
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 2.8e-79 299.3 233 63.1
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 4.8e-79 298.5 254 59.8
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.8e-78 296.6 287 54.0
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 2.0e-77 293.1 250 60.0
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 4.2e-75 285.4 172 75.6
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 9.3e-75 284.3 232 58.2
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 2.1e-74 283.1 236 62.3
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.3e-73 280.4 316 46.8
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 1.1e-72 277.3 202 63.9
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 1.2e-69 267.3 247 56.3
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 9.3e-67 257.7 148 80.4
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 4.9e-60 235.3 136 79.4
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 6.5e-60 235.0 154 76.6
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 1.4e-59 233.8 318 44.7
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.5e-59 233.0 281 48.4
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 6.7e-57 224.9 169 69.8
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 2.8e-55 219.5 195 53.8
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 1.4e-54 217.2 250 44.0
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 2.4e-54 216.5 189 51.3
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 6.5e-52 208.4 200 55.0
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 1.6e-50 203.8 146 62.3
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 6.1e-50 201.8 119 79.0
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 5.3e-46 188.7 193 42.5
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 1.6e-42 177.2 106 76.4
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 5.1e-41 172.2 99 82.8
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.1e-40 171.0 99 81.8
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 2.8e-39 166.4 193 43.0
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 3.1e-38 162.9 129 62.8
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 2.0e-37 160.2 130 58.5
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 3.4e-37 159.5 99 73.7
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 7.7e-37 158.3 186 51.1
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 2.5e-35 153.3 97 73.2
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 9.4e-35 151.4 87 83.9
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 5.3e-30 135.6 69 95.7
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 5.3e-30 135.6 92 77.2
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 7.0e-30 135.2 89 78.7
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 1.6e-29 134.0 72 91.7
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 1.6e-29 134.0 72 91.7
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 2.6e-29 133.3 88 78.4
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 2.2e-28 130.2 152 47.4
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 1.5e-27 127.5 84 65.5
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 2.3e-25 120.2 101 53.5
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 4.0e-25 119.4 203 33.5
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 7.0e-22 108.6 89 57.3
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 8.5e-20 101.7 102 52.9
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 3.4e-16 89.7 44 97.7
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 3.4e-16 89.7 44 97.7
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 7.5e-16 88.6 181 28.7
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 2.8e-15 86.7 82 56.1
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 7.7e-13 78.6 48 75.0
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 1.0e-12 78.2 117 28.2
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 2.9e-12 76.6 55 70.9
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 1.5e-11 74.3 56 69.6
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 1.9e-11 73.9 67 50.7
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 5.5e-11 72.4 35 97.1
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 5.5e-11 72.4 35 97.1
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 2.8e-10 70.1 35 94.3
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 3.0e-09 66.6 42 73.8
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 4.0e-09 66.2 88 47.7
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 2.6e-08 63.5 60 46.7
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 2.2e-07 60.5 45 57.8
BcaC03g15720 Brassica carinata HOM05D000589 ORTHO05D039119 1.8e-06 57.4 34 79.4


User provided reference genes

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