Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10597 Brassica carinata HOM05D003630 ORTHO05D004151 1.2e-58 229.6 108 100.0
C04p15210 Brassica napus HOM05D003630 ORTHO05D004151 2.2e-57 225.3 108 97.2
BolC4t23094H Brassica oleracea HOM05D003630 ORTHO05D004151 2.2e-57 225.3 108 97.2
A05p11750 Brassica napus HOM05D003630 ORTHO05D004151 2.9e-57 224.9 108 97.2
BraA05t20119Z Brassica rapa HOM05D003630 ORTHO05D004151 2.9e-57 224.9 108 97.2
BcaC02g11461 Brassica carinata HOM05D003630 ORTHO05D004151 6.4e-57 223.8 108 96.3
Carub.0004s1550 Capsella rubella HOM05D003630 ORTHO05D004151 9.3e-56 219.9 109 95.4
Sp4g16220 Schrenkiella parvula HOM05D003630 ORTHO05D004151 2.7e-55 218.4 109 94.5
BcaB01g03917 Brassica carinata HOM05D003630 ORTHO05D004151 3.9e-54 214.5 109 92.7
BcaC01g05821 Brassica carinata HOM05D003630 ORTHO05D004151 3.9e-54 214.5 109 92.7
BcaC01g05822 Brassica carinata HOM05D003630 ORTHO05D004151 3.9e-54 214.5 109 92.7
A03p18920 Brassica napus HOM05D003630 ORTHO05D004151 3.9e-54 214.5 109 92.7
BraA03t11151Z Brassica rapa HOM05D003630 ORTHO05D004151 3.9e-54 214.5 109 92.7
AL4G29600 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 8.7e-54 213.4 107 94.4
BolC3t14590H Brassica oleracea HOM05D003630 ORTHO05D004151 3.3e-53 211.5 108 92.6
AT2G33830 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 1.6e-52 209.1 109 93.6
Thhalv10017461m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 1.4e-48 196.1 109 87.2
CARHR127940 Cardamine hirsuta HOM05D003630 ORTHO05D004151 9.3e-48 193.4 108 88.0
C03p22060 Brassica napus HOM05D003630 ORTHO05D004151 1.3e-46 189.5 96 92.7
Aa31sc652G110 Aethionema arabicum HOM05D003630 ORTHO05D004151 3.3e-45 184.9 110 79.1
Aa31sc652G20 Aethionema arabicum HOM05D003630 ORTHO05D004151 3.3e-45 184.9 110 79.1
Carub.0001s2678 Capsella rubella HOM05D003630 ORTHO05D004151 4.5e-34 147.9 117 62.4
Gohir.A05G159800 Gossypium hirsutum HOM05D003630 ORTHO05D004151 1.9e-32 142.5 115 66.1
Gohir.D05G162500 Gossypium hirsutum HOM05D003630 ORTHO05D004151 4.2e-32 141.4 115 66.1
Thhalv10009086m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 3.6e-31 138.3 119 57.1
Cc02_g13650 Coffea canephora HOM05D003630 ORTHO05D004151 1.4e-30 136.3 122 58.2
THA.LOC104814224 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 3.0e-30 135.2 106 67.9
TAR626G1897 Trochodendron aralioides HOM05D003630 ORTHO05D004151 3.0e-30 135.2 117 59.8
BcaC05g26841 Brassica carinata HOM05D003630 ORTHO05D004151 3.9e-30 134.8 114 57.9
CiPaw.10G051200 Carya illinoinensis HOM05D003630 ORTHO05D004151 5.1e-30 134.4 118 61.9
MBI02_g32444_MAGBIO Magnolia biondii HOM05D003630 ORTHO05D004151 6.7e-30 134.0 120 56.7
PGR004G0839 Punica granatum HOM05D003630 ORTHO05D004151 8.8e-30 133.7 120 57.5
BcaB07g32449 Brassica carinata HOM05D003630 ORTHO05D004151 1.5e-29 132.9 114 57.0
AT1G28330 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 4.3e-29 131.3 106 61.3
AT5G44300 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 5.7e-29 131.0 110 58.2
BraA02t07868Z Brassica rapa HOM05D003630 ORTHO05D004151 9.7e-29 130.2 110 58.2
Nitab4.5_0003487g0100 Nicotiana tabacum HOM05D003630 ORTHO05D004151 9.7e-29 130.2 121 55.4
TAR624G0603 Trochodendron aralioides HOM05D003630 ORTHO05D004151 9.7e-29 130.2 111 60.4
Aa31sc86G60 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.3e-28 129.8 101 66.3
ATR0752G193 Amborella trichopoda HOM05D003630 ORTHO05D004151 1.7e-28 129.4 117 56.4
AL1G41920 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 2.2e-28 129.0 114 57.0
C02p44910 Brassica napus HOM05D003630 ORTHO05D004151 2.2e-28 129.0 110 57.3
BolC2t10526H Brassica oleracea HOM05D003630 ORTHO05D004151 2.2e-28 129.0 110 57.3
AL8G15690 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 2.8e-28 128.6 110 57.3
CiPaw.09G062300 Carya illinoinensis HOM05D003630 ORTHO05D004151 2.8e-28 128.6 113 59.3
PGSC0003DMG400012826 Solanum tuberosum HOM05D003630 ORTHO05D004151 2.8e-28 128.6 124 55.6
Aa31LG9G8870 Aethionema arabicum HOM05D003630 ORTHO05D004151 6.3e-28 127.5 109 56.9
MSTRG.15866 Avicennia marina HOM05D003630 ORTHO05D004151 6.3e-28 127.5 118 56.8
A02p28330 Brassica napus HOM05D003630 ORTHO05D004151 6.3e-28 127.5 112 58.0
Sp2g09130 Schrenkiella parvula HOM05D003630 ORTHO05D004151 6.3e-28 127.5 112 56.2
Migut.H01476 Erythranthe guttata HOM05D003630 ORTHO05D004151 8.2e-28 127.1 121 57.9
Thhalv10003427m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 8.2e-28 127.1 111 58.6
Carub.0008s0422 Capsella rubella HOM05D003630 ORTHO05D004151 1.1e-27 126.7 110 57.3
Dinv17335 Davidia involucrata HOM05D003630 ORTHO05D004151 1.1e-27 126.7 118 56.8
Nitab4.5_0000516g0130 Nicotiana tabacum HOM05D003630 ORTHO05D004151 1.1e-27 126.7 122 54.1
PGSC0003DMG400029732 Solanum tuberosum HOM05D003630 ORTHO05D004151 1.4e-27 126.3 116 53.4
HanXRQChr04g0123791 Helianthus annuus HOM05D003630 ORTHO05D004151 1.8e-27 125.9 116 58.6
Prupe.4G050800 Prunus persica HOM05D003630 ORTHO05D004151 1.8e-27 125.9 115 60.0
Sp1g24570 Schrenkiella parvula HOM05D003630 ORTHO05D004151 3.1e-27 125.2 103 62.1
Solyc02g077880.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 3.1e-27 125.2 113 53.1
Sopen02g022730 Solanum pennellii HOM05D003630 ORTHO05D004151 3.1e-27 125.2 113 53.1
Cpa.g.sc373.3 Carica papaya HOM05D003630 ORTHO05D004151 4.1e-27 124.8 117 55.6
RcHm_v2.0_Chr5g0008921 Rosa chinensis HOM05D003630 ORTHO05D004151 4.1e-27 124.8 106 56.6
TWI38G1513 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 4.1e-27 124.8 115 58.3
ECA236G4733 Erigeron canadensis HOM05D003630 ORTHO05D004151 5.3e-27 124.4 118 56.8
Manes.17G047900 Manihot esculenta HOM05D003630 ORTHO05D004151 5.3e-27 124.4 117 56.4
PGR042G3375 Punica granatum HOM05D003630 ORTHO05D004151 5.3e-27 124.4 110 60.9
Actinidia07592 Actinidia chinensis HOM05D003630 ORTHO05D004151 6.9e-27 124.0 119 53.8
GSVIVG01021092001 Vitis vinifera HOM05D003630 ORTHO05D004151 6.9e-27 124.0 115 53.0
Duzib160G0312 Durio zibethinus HOM05D003630 ORTHO05D004151 9.1e-27 123.6 110 60.0
Solyc03g006360.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 9.1e-27 123.6 125 50.4
Hma1.2p1_0208F.1_g088370 Hydrangea macrophylla HOM05D003630 ORTHO05D004151 1.2e-26 123.2 122 52.5
Nn1g04163 Nelumbo nucifera HOM05D003630 ORTHO05D004151 1.2e-26 123.2 116 56.0
vmacro15923 Vaccinium macrocarpon HOM05D003630 ORTHO05D004151 1.2e-26 123.2 121 57.9
arahy.Tifrunner.gnm1.ann1.H8XLFU Arachis hypogaea HOM05D003630 ORTHO05D004151 2.6e-26 122.1 118 60.2
arahy.Tifrunner.gnm1.ann1.S1G93A Arachis hypogaea HOM05D003630 ORTHO05D004151 2.6e-26 122.1 118 60.2
arahy.Tifrunner.gnm1.ann1.Q5B35H Arachis hypogaea HOM05D003630 ORTHO05D004151 4.5e-26 121.3 119 52.1
MSTRG.13203 Avicennia marina HOM05D003630 ORTHO05D004151 4.5e-26 121.3 116 55.2
Peaxi162Scf01100g00009 Petunia axillaris HOM05D003630 ORTHO05D004151 7.7e-26 120.6 113 54.0
CARHR027820 Cardamine hirsuta HOM05D003630 ORTHO05D004151 1.0e-25 120.2 115 54.8
CDE11G0243 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 1.0e-25 120.2 117 54.7
SalBow8G2511 Salvia bowleyana HOM05D003630 ORTHO05D004151 1.0e-25 120.2 114 57.0
Gohir.A06G129700 Gossypium hirsutum HOM05D003630 ORTHO05D004151 1.3e-25 119.8 106 56.6
Gohir.D06G133900 Gossypium hirsutum HOM05D003630 ORTHO05D004151 1.3e-25 119.8 106 56.6
unitig_749.g13657 Utricularia gibba HOM05D003630 ORTHO05D004151 1.3e-25 119.8 115 56.5
HPP92_018480 Vanilla planifolia HOM05D003630 ORTHO05D004151 1.7e-25 119.4 117 52.1
HPP92_018482 Vanilla planifolia HOM05D003630 ORTHO05D004151 1.7e-25 119.4 117 52.1
ClCG01G023140 Citrullus lanatus HOM05D003630 ORTHO05D004151 2.9e-25 118.6 118 52.5
Gorai.009G167500 Gossypium raimondii HOM05D003630 ORTHO05D004151 3.8e-25 118.2 102 63.7
Lj6g0013661 Lotus japonicus HOM05D003630 ORTHO05D004151 3.8e-25 118.2 115 59.1
Oeu012144.1 Olea europaea HOM05D003630 ORTHO05D004151 3.8e-25 118.2 119 51.3
Oeu029367.1 Olea europaea HOM05D003630 ORTHO05D004151 5.0e-25 117.9 117 53.8
Sed0017838 Sechium edule HOM05D003630 ORTHO05D004151 5.0e-25 117.9 117 54.7
Migut.M01120 Erythranthe guttata HOM05D003630 ORTHO05D004151 6.5e-25 117.5 120 52.5
QL05p041782 Quercus lobata HOM05D003630 ORTHO05D004151 6.5e-25 117.5 115 55.7
Sed0024812 Sechium edule HOM05D003630 ORTHO05D004151 6.5e-25 117.5 112 54.5
Aqoxy1G02347 Aquilegia oxysepala HOM05D003630 ORTHO05D004151 8.5e-25 117.1 112 51.8
Oeu056100.2 Olea europaea HOM05D003630 ORTHO05D004151 1.1e-24 116.7 116 50.9
Os11g0671000 Oryza sativa ssp. japonica HOM05D003630 ORTHO05D004151 1.1e-24 116.7 124 50.0
BolC5t31435H Brassica oleracea HOM05D003630 ORTHO05D004151 1.4e-24 116.3 112 52.7
CDE05G2086 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 1.4e-24 116.3 117 53.0
FAN16G2355 Fragaria x ananassa HOM05D003630 ORTHO05D004151 1.9e-24 115.9 107 55.1
FAN25G0655 Fragaria x ananassa HOM05D003630 ORTHO05D004151 1.9e-24 115.9 107 55.1
arahy.Tifrunner.gnm1.ann1.RY2Y1Z Arachis hypogaea HOM05D003630 ORTHO05D004151 3.2e-24 115.2 119 50.4
FvH4_3g08830 Fragaria vesca HOM05D003630 ORTHO05D004151 3.2e-24 115.2 110 54.5
FAN11G3953 Fragaria x ananassa HOM05D003630 ORTHO05D004151 3.2e-24 115.2 110 54.5
Lalb_Chr09g0327781 Lupinus albus HOM05D003630 ORTHO05D004151 3.2e-24 115.2 115 54.8
Thecc.06G183500 Theobroma cacao HOM05D003630 ORTHO05D004151 3.2e-24 115.2 103 60.2
A09p37730 Brassica napus HOM05D003630 ORTHO05D004151 5.5e-24 114.4 112 51.8
C05p27220 Brassica napus HOM05D003630 ORTHO05D004151 5.5e-24 114.4 112 51.8
BraA09t39285Z Brassica rapa HOM05D003630 ORTHO05D004151 5.5e-24 114.4 112 51.8
FAN21G0750 Fragaria x ananassa HOM05D003630 ORTHO05D004151 5.5e-24 114.4 110 53.6
Lalb_Chr15g0089711 Lupinus albus HOM05D003630 ORTHO05D004151 5.5e-24 114.4 119 55.5
Ciclev10017162m.g Citrus clementina HOM05D003630 ORTHO05D004151 9.4e-24 113.6 106 54.7
Atru.chr10.1820 Acer truncatum HOM05D003630 ORTHO05D004151 1.2e-23 113.2 105 53.3
Atru.chr10.1837 Acer truncatum HOM05D003630 ORTHO05D004151 1.2e-23 113.2 105 53.3
COL.COLO4_31436 Corchorus olitorius HOM05D003630 ORTHO05D004151 1.2e-23 113.2 102 55.9
Sed0001316 Sechium edule HOM05D003630 ORTHO05D004151 1.2e-23 113.2 108 53.7
SGA_v2.0_scaffold100G29703 Striga asiatica HOM05D003630 ORTHO05D004151 1.6e-23 112.8 114 52.6
THA.LOC104812301 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 1.6e-23 112.8 110 53.6
Phvul.006G183600 Phaseolus vulgaris HOM05D003630 ORTHO05D004151 2.7e-23 112.1 118 53.4
CANSAT35G1140 Cannabis sativa HOM05D003630 ORTHO05D004151 3.6e-23 111.7 122 51.6
CARHR178890 Cardamine hirsuta HOM05D003630 ORTHO05D004151 3.6e-23 111.7 114 50.0
CiPaw.04G030300 Carya illinoinensis HOM05D003630 ORTHO05D004151 4.7e-23 111.3 101 57.4
CsaV3_6G050280 Cucumis sativus L. HOM05D003630 ORTHO05D004151 4.7e-23 111.3 118 49.2
BcaC03g16649 Brassica carinata HOM05D003630 ORTHO05D004151 1.0e-22 110.2 98 55.1
CSS0035295 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 1.0e-22 110.2 123 52.0
ClCG03G008090 Citrullus lanatus HOM05D003630 ORTHO05D004151 1.0e-22 110.2 112 50.0
VMungo0540G1118 Vigna mungo HOM05D003630 ORTHO05D004151 1.4e-22 109.8 118 52.5
Ah.09g237490 Amaranthus hybridus HOM05D003630 ORTHO05D004151 1.8e-22 109.4 119 47.9
Rhsim02G0132700 Rhododendron simsii HOM05D003630 ORTHO05D004151 2.3e-22 109.0 116 56.0
Ca_00350_v3 Cicer arietinum L. HOM05D003630 ORTHO05D004151 3.0e-22 108.6 115 51.3
Duzib235G1039 Durio zibethinus HOM05D003630 ORTHO05D004151 3.0e-22 108.6 117 50.4
Medtr2g014240 Medicago truncatula HOM05D003630 ORTHO05D004151 3.9e-22 108.2 110 53.6
HanXRQChr01g0003821 Helianthus annuus HOM05D003630 ORTHO05D004151 5.1e-22 107.8 115 53.0
Glyma.13G237000 Glycine max HOM05D003630 ORTHO05D004151 6.7e-22 107.5 110 52.7
MELO3C002620.2 Cucumis melo HOM05D003630 ORTHO05D004151 8.8e-22 107.1 108 53.7
Lsat_1_v5_gn_1_124360 Lactuca sativa HOM05D003630 ORTHO05D004151 8.8e-22 107.1 105 53.3
Lsat_1_v5_gn_7_20981 Lactuca sativa HOM05D003630 ORTHO05D004151 8.8e-22 107.1 105 55.2
CSS0033873 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 1.1e-21 106.7 102 55.9
TPR.G16501 Trifolium pratense HOM05D003630 ORTHO05D004151 1.1e-21 106.7 115 52.2
Lalb_Chr18g0059451 Lupinus albus HOM05D003630 ORTHO05D004151 1.5e-21 106.3 121 54.5
HPP92_014190 Vanilla planifolia HOM05D003630 ORTHO05D004151 1.5e-21 106.3 114 50.9
Manes.16G030000 Manihot esculenta HOM05D003630 ORTHO05D004151 2.0e-21 105.9 104 54.8
CSS0037340 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 2.6e-21 105.5 105 54.3
CAN.G529.26 Capsicum annuum HOM05D003630 ORTHO05D004151 2.6e-21 105.5 70 70.0
CsaV3_1G012460 Cucumis sativus L. HOM05D003630 ORTHO05D004151 2.6e-21 105.5 108 52.8
Dinv40586 Davidia involucrata HOM05D003630 ORTHO05D004151 3.3e-21 105.1 106 53.8
PSO541G4117 Papaver somniferum HOM05D003630 ORTHO05D004151 4.4e-21 104.8 125 48.8
Glyma.15G076500 Glycine max HOM05D003630 ORTHO05D004151 5.7e-21 104.4 113 50.4
Sopen03g002370 Solanum pennellii HOM05D003630 ORTHO05D004151 5.7e-21 104.4 123 48.0
AUR62017046 Chenopodium quinoa HOM05D003630 ORTHO05D004151 1.7e-20 102.8 120 48.3
Gorai.010G155600 Gossypium raimondii HOM05D003630 ORTHO05D004151 1.7e-20 102.8 96 54.2
DCAR_003387 Daucus carota HOM05D003630 ORTHO05D004151 3.7e-20 101.7 117 45.3
Potri.004G047100 Populus trichocarpa HOM05D003630 ORTHO05D004151 3.7e-20 101.7 108 51.9
TWI38G1867 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 3.7e-20 101.7 104 51.9
AUR62014851 Chenopodium quinoa HOM05D003630 ORTHO05D004151 1.4e-19 99.8 120 47.5
Cfa000510 Carpinus fangiana HOM05D003630 ORTHO05D004151 3.1e-19 98.6 107 51.4
Haze_06402 Corylus avellana HOM05D003630 ORTHO05D004151 4.1e-19 98.2 108 50.9
MELO3C007269.2 Cucumis melo HOM05D003630 ORTHO05D004151 6.9e-19 97.4 106 48.1
PSO675G3190 Papaver somniferum HOM05D003630 ORTHO05D004151 1.2e-18 96.7 122 45.1
Sc24g0001020 Simmondsia chinensis HOM05D003630 ORTHO05D004151 2.0e-18 95.9 104 49.0
BcaB07g30534 Brassica carinata HOM05D003630 ORTHO05D004151 3.4e-18 95.1 96 52.1
SEGI_31386 Sequoiadendron giganteum HOM05D003630 ORTHO05D004151 2.9e-17 92.0 133 42.9
EL10Ac8g20421 Beta vulgaris HOM05D003630 ORTHO05D004151 6.5e-17 90.9 120 42.5
DCAR_008021 Daucus carota HOM05D003630 ORTHO05D004151 1.4e-16 89.7 121 42.1
Aa31LG9G7730 Aethionema arabicum HOM05D003630 ORTHO05D004151 2.5e-16 89.0 87 54.0
Psat1g203680 Pisum sativum HOM05D003630 ORTHO05D004151 2.1e-15 85.9 103 48.5
Sabra04G0029500 Salix brachista HOM05D003630 ORTHO05D004151 2.1e-15 85.9 108 46.3
Pp3c15_6160 Physcomitrium patens HOM05D003630 ORTHO05D004151 5.2e-14 81.3 145 35.2
MD14G1054500 Malus domestica HOM05D003630 ORTHO05D004151 8.8e-14 80.5 89 48.3
SMO367G0919 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 8.8e-14 80.5 112 43.8
ECA248G1596 Erigeron canadensis HOM05D000885 ORTHO05D008875 2.0e-13 79.3 93 49.5
Sc17g0006070 Simmondsia chinensis HOM05D003630 ORTHO05D004151 2.0e-13 79.3 105 40.0
Mapoly0057s0054 Marchantia polymorpha HOM05D003630 ORTHO05D004151 2.6e-13 79.0 135 35.6
SMO343G0126 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 3.3e-13 78.6 152 34.2
Sed0007569 Sechium edule HOM05D003630 ORTHO05D004151 4.4e-13 78.2 96 49.0
AagrBONN_evm.TU.Sc2ySwM_228.5600 Anthoceros agrestis HOM05D003630 ORTHO05D004151 2.6e-10 68.9 145 34.5
AagrBONN_evm.TU.Sc2ySwM_362.1976 Anthoceros agrestis HOM05D003630 ORTHO05D004151 6.1e-07 57.8 61 49.2


User provided reference genes

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