Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10575 Brassica carinata HOM05D000499 ORTHO05D011058 2.9e-57 224.9 110 100.0
BcaNung00234 Brassica carinata HOM05D000499 ORTHO05D011058 2.1e-55 218.8 110 97.3
BcaB08g36611 Brassica carinata HOM05D000499 ORTHO05D011058 4.1e-51 204.5 122 85.2
A03p66010 Brassica napus HOM05D000499 ORTHO05D011058 5.8e-37 157.5 120 69.2
BraA03t15657Z Brassica rapa HOM05D000499 ORTHO05D011058 5.8e-37 157.5 120 69.2
C09p39260 Brassica napus HOM05D000499 ORTHO05D007471 1.7e-33 146.0 126 61.1
BolC9t56805H Brassica oleracea HOM05D000499 ORTHO05D007471 1.7e-33 146.0 126 61.1
BraSC35t45995Z Brassica rapa HOM05D005048 ORTHO05D006420 3.9e-33 144.8 126 61.1
A10p08040 Brassica napus HOM05D005048 ORTHO05D006420 1.5e-32 142.9 126 60.3
A03p16470 Brassica napus HOM05D000499 ORTHO05D007471 7.3e-32 140.6 126 58.7
BraA03t10936Z Brassica rapa HOM05D000499 ORTHO05D007471 7.3e-32 140.6 126 58.7
Thhalv10013482m.g Eutrema salsugineum HOM05D000499 ORTHO05D007471 2.8e-31 138.7 130 56.9
Sp6g13080 Schrenkiella parvula HOM05D000499 ORTHO05D007471 3.6e-31 138.3 129 56.6
BcaC01g06051 Brassica carinata HOM05D000499 ORTHO05D007471 6.2e-31 137.5 126 57.1
C03p19360 Brassica napus HOM05D000499 ORTHO05D007471 6.2e-31 137.5 126 57.1
BolC3t14322H Brassica oleracea HOM05D000499 ORTHO05D007471 6.2e-31 137.5 126 57.1
Carub.0008s0636 Capsella rubella HOM05D000499 ORTHO05D007471 5.2e-30 134.4 122 57.4
AT5G42660 Arabidopsis thaliana HOM05D000499 ORTHO05D007471 7.5e-29 130.6 129 52.7
Aa31LG9G12730 Aethionema arabicum HOM05D000499 ORTHO05D007471 1.3e-28 129.8 129 53.5
AL8G18540 Arabidopsis lyrata HOM05D000499 ORTHO05D007471 6.4e-28 127.5 129 50.4
Atru.chr13.570 Acer truncatum HOM05D000499 ORTHO05D007471 6.0e-26 120.9 132 48.5
BcaC01g02034 Brassica carinata HOM05D000499 ORTHO05D011058 1.3e-25 119.8 120 58.3
vmacro21599 Vaccinium macrocarpon HOM05D000499 ORTHO05D007471 1.1e-24 116.7 132 46.2
THA.LOC104803394 Tarenaya hassleriana HOM05D000499 ORTHO05D007471 2.5e-24 115.5 137 46.0
FAN10G3758 Fragaria x ananassa HOM05D000499 ORTHO05D007471 5.6e-24 114.4 131 47.3
Cfa018454 Carpinus fangiana HOM05D000499 ORTHO05D007471 9.5e-24 113.6 132 47.0
RcHm_v2.0_Chr1g0318301 Rosa chinensis HOM05D000499 ORTHO05D007471 1.2e-23 113.2 132 45.5
Actinidia15289 Actinidia chinensis HOM05D000499 ORTHO05D007471 1.6e-23 112.8 131 45.0
CANSAT56G4116 Cannabis sativa HOM05D000499 ORTHO05D007471 2.8e-23 112.1 132 45.5
Dinv39368 Davidia involucrata HOM05D000499 ORTHO05D007471 3.6e-23 111.7 152 42.1
Hma1.2p1_0584F.1_g183470 Hydrangea macrophylla HOM05D000499 ORTHO05D007471 3.6e-23 111.7 125 48.0
Oeu015605.2 Olea europaea HOM05D000499 ORTHO05D007471 3.6e-23 111.7 125 46.4
CiPaw.15G071000 Carya illinoinensis HOM05D000499 ORTHO05D007471 4.7e-23 111.3 132 45.5
Haze_17612 Corylus avellana HOM05D000499 ORTHO05D007471 4.7e-23 111.3 130 46.9
Dinv36028 Davidia involucrata HOM05D000499 ORTHO05D007471 4.7e-23 111.3 132 44.7
FAN01G0570 Fragaria x ananassa HOM05D000499 ORTHO05D007471 6.2e-23 110.9 133 45.9
HanXRQChr09g0268401 Helianthus annuus HOM05D000499 ORTHO05D007471 8.1e-23 110.5 121 47.9
FAN03G3351 Fragaria x ananassa HOM05D000499 ORTHO05D007471 1.1e-22 110.2 133 45.9
Oeu004672.1 Olea europaea HOM05D000499 ORTHO05D007471 1.1e-22 110.2 125 46.4
PGR083G1137 Punica granatum HOM05D000499 ORTHO05D007471 1.1e-22 110.2 132 43.9
FvH4_7g01740 Fragaria vesca HOM05D000499 ORTHO05D007471 1.4e-22 109.8 134 45.5
FAN06G3702 Fragaria x ananassa HOM05D000499 ORTHO05D007471 1.4e-22 109.8 134 45.5
Lj4A47T76 Lonicera japonica HOM05D000499 ORTHO05D007471 1.4e-22 109.8 128 44.5
PSO541G2319 Papaver somniferum HOM05D000499 ORTHO05D007471 1.4e-22 109.8 127 47.2
Thecc.08G020400 Theobroma cacao HOM05D000499 ORTHO05D007471 1.4e-22 109.8 133 46.6
Duzib147G0278 Durio zibethinus HOM05D000499 ORTHO05D007471 1.8e-22 109.4 130 48.5
PSO675G5635 Papaver somniferum HOM05D000499 ORTHO05D007471 1.8e-22 109.4 127 46.5
Actinidia22576 Actinidia chinensis HOM05D000499 ORTHO05D011058 3.1e-22 108.6 130 43.8
Ciclev10003605m.g Citrus clementina HOM05D000499 ORTHO05D007471 4.0e-22 108.2 137 43.8
Sc02g0006640 Simmondsia chinensis HOM05D000499 ORTHO05D007471 4.0e-22 108.2 132 43.2
Cpa.g.sc64.37 Carica papaya HOM05D000499 ORTHO05D007471 6.8e-22 107.5 132 44.7
Lalb_Chr22g0355361 Lupinus albus HOM05D000499 ORTHO05D007471 6.8e-22 107.5 133 43.6
TWI36G1262 Tripterygium wilfordii HOM05D000499 ORTHO05D007471 6.8e-22 107.5 135 41.5
ECA232G3898 Erigeron canadensis HOM05D000499 ORTHO05D007471 8.9e-22 107.1 121 47.9
TWI12G0811 Tripterygium wilfordii HOM05D000499 ORTHO05D007471 8.9e-22 107.1 132 42.4
TAR381G1236 Trochodendron aralioides HOM05D000499 ORTHO05D007471 8.9e-22 107.1 160 37.5
Duzib187G1353 Durio zibethinus HOM05D000499 ORTHO05D007471 1.2e-21 106.7 133 44.4
arahy.Tifrunner.gnm1.ann1.527VTZ Arachis hypogaea HOM05D000499 ORTHO05D007471 1.5e-21 106.3 120 45.8
CiPaw.05G060300 Carya illinoinensis HOM05D000499 ORTHO05D007471 1.5e-21 106.3 131 42.0
Prupe.2G023300 Prunus persica HOM05D000499 ORTHO05D007471 1.5e-21 106.3 132 43.2
Medtr1g021670 Medicago truncatula HOM05D000499 ORTHO05D007471 2.0e-21 105.9 132 43.2
TAR376G0340 Trochodendron aralioides HOM05D000499 ORTHO05D007471 2.0e-21 105.9 129 42.6
GSVIVG01009625001 Vitis vinifera HOM05D000499 ORTHO05D007471 2.0e-21 105.9 132 42.4
Cfa004969 Carpinus fangiana HOM05D000499 ORTHO05D007471 3.4e-21 105.1 141 40.4
Haze_02428 Corylus avellana HOM05D000499 ORTHO05D007471 3.4e-21 105.1 141 39.0
Gohir.A06G012900 Gossypium hirsutum HOM05D000499 ORTHO05D007471 3.4e-21 105.1 133 43.6
SGA_v2.0_scaffold14G07051 Striga asiatica HOM05D000499 ORTHO05D007471 3.4e-21 105.1 141 41.1
MD02G1301200 Malus domestica HOM05D000499 ORTHO05D007471 4.4e-21 104.8 132 43.2
MD07G1022800 Malus domestica HOM05D000499 ORTHO05D007471 4.4e-21 104.8 132 42.4
arahy.Tifrunner.gnm1.ann1.HC27T5 Arachis hypogaea HOM05D000499 ORTHO05D007471 7.6e-21 104.0 120 45.0
Ca_13326_v3 Cicer arietinum L. HOM05D000499 ORTHO05D007471 7.6e-21 104.0 132 43.2
COL.COLO4_26389 Corchorus olitorius HOM05D000499 ORTHO05D007471 7.6e-21 104.0 134 44.8
Glyma.14G078200 Glycine max HOM05D000499 ORTHO05D007471 7.6e-21 104.0 133 43.6
Gohir.D01G051366 Gossypium hirsutum HOM05D000499 ORTHO05D011058 7.6e-21 104.0 56 76.8
Gohir.D06G010400 Gossypium hirsutum HOM05D000499 ORTHO05D007471 7.6e-21 104.0 133 43.6
Gohir.D11G191020 Gossypium hirsutum HOM05D000499 ORTHO05D011058 7.6e-21 104.0 56 76.8
Gorai.010G013300 Gossypium raimondii HOM05D000499 ORTHO05D007471 7.6e-21 104.0 133 43.6
Lj5g0012472 Lotus japonicus HOM05D000499 ORTHO05D007471 7.6e-21 104.0 132 42.4
Nn5g29461 Nelumbo nucifera HOM05D000499 ORTHO05D007471 9.9e-21 103.6 125 44.0
Aqoxy2G03993 Aquilegia oxysepala HOM05D000499 ORTHO05D007471 1.3e-20 103.2 124 45.2
Lsat_1_v5_gn_4_123041 Lactuca sativa HOM05D000499 ORTHO05D007471 1.3e-20 103.2 121 47.1
Peaxi162Scf01064g00263 Petunia axillaris HOM05D000499 ORTHO05D007471 1.3e-20 103.2 159 40.3
Psat6g010720 Pisum sativum HOM05D000499 ORTHO05D007471 1.3e-20 103.2 132 42.4
RcHm_v2.0_Chr4g0418501 Rosa chinensis HOM05D000499 ORTHO05D007471 1.7e-20 102.8 126 42.9
Sabra02G0118600 Salix brachista HOM05D000499 ORTHO05D007471 1.7e-20 102.8 132 41.7
C01p38550 Brassica napus HOM05D026149 ORTHO05D011058 2.2e-20 102.4 122 52.5
Potri.002G149900 Populus trichocarpa HOM05D000499 ORTHO05D007471 2.2e-20 102.4 132 41.7
Gohir.D08G138060 Gossypium hirsutum HOM05D000499 ORTHO05D011058 2.9e-20 102.1 56 75.0
Gohir.D11G212066 Gossypium hirsutum HOM05D000499 ORTHO05D011058 2.9e-20 102.1 56 75.0
SalBow8G5466 Salvia bowleyana HOM05D000499 ORTHO05D007471 2.9e-20 102.1 132 43.2
arahy.Tifrunner.gnm1.ann1.LS1NQA Arachis hypogaea HOM05D000499 ORTHO05D007471 3.8e-20 101.7 126 42.1
arahy.Tifrunner.gnm1.ann1.UQWD9J Arachis hypogaea HOM05D000499 ORTHO05D007471 3.8e-20 101.7 126 42.1
BolC1t03815H Brassica oleracea HOM05D026149 ORTHO05D011058 4.9e-20 101.3 124 52.4
DCAR_019495 Daucus carota HOM05D003114 ORTHO05D003519 4.9e-20 101.3 119 46.2
Dinv23563 Davidia involucrata HOM05D000370 ORTHO05D001335 4.9e-20 101.3 56 73.2
Gohir.D10G077900 Gossypium hirsutum HOM05D003897 ORTHO05D011058 4.9e-20 101.3 57 73.7
HanXRQChr16g0507941 Helianthus annuus HOM05D000499 ORTHO05D007471 4.9e-20 101.3 121 43.8
QL02p007186 Quercus lobata HOM05D000499 ORTHO05D007471 4.9e-20 101.3 132 40.9
Ah.07g208480 Amaranthus hybridus HOM05D000499 ORTHO05D007471 6.4e-20 100.9 132 43.2
Glyma.17G247200 Glycine max HOM05D000499 ORTHO05D007471 6.4e-20 100.9 133 41.4
MBI16_g13161_MAGBIO Magnolia biondii HOM05D000499 ORTHO05D007471 6.4e-20 100.9 146 39.0
Hund12053 Selenicereus undatus HOM05D000499 ORTHO05D007471 6.4e-20 100.9 142 40.8
Gohir.D07G165675 Gossypium hirsutum HOM05D000499 ORTHO05D011058 8.4e-20 100.5 56 71.4
arahy.Tifrunner.gnm1.ann1.WE07RT Arachis hypogaea HOM05D000499 ORTHO05D011058 1.1e-19 100.1 118 43.2
EL10Ac1g01746 Beta vulgaris HOM05D000499 ORTHO05D007471 1.1e-19 100.1 66 69.7
CSS0041102 Camellia sinensis var. sinensis HOM05D000499 ORTHO05D007471 1.1e-19 100.1 126 42.9
Migut.N02677 Erythranthe guttata HOM05D000499 ORTHO05D007471 1.1e-19 100.1 132 40.2
VMungo0647G0317 Vigna mungo HOM05D000499 ORTHO05D007471 1.1e-19 100.1 133 42.1
Duzib132G0069 Durio zibethinus HOM05D000499 ORTHO05D007471 1.4e-19 99.8 56 73.2
Phvul.001G017600 Phaseolus vulgaris HOM05D000499 ORTHO05D007471 1.4e-19 99.8 133 42.1
Zm00001eb153240 Zea mays HOM05D000499 ORTHO05D007471 1.4e-19 99.8 56 69.6
Manes.05G164700 Manihot esculenta HOM05D000499 ORTHO05D007471 1.9e-19 99.4 124 44.4
MSTRG.22285 Avicennia marina HOM05D000499 ORTHO05D007471 3.2e-19 98.6 124 42.7
Gorai.003G067600 Gossypium raimondii HOM05D000499 ORTHO05D011058 3.2e-19 98.6 56 71.4
Peaxi162Scf00280g00811 Petunia axillaris HOM05D000499 ORTHO05D007471 3.2e-19 98.6 132 42.4
ATR0733G207 Amborella trichopoda HOM05D000499 ORTHO05D007471 4.1e-19 98.2 128 43.0
TPR.G15769 Trifolium pratense HOM05D000499 ORTHO05D007471 4.1e-19 98.2 125 43.2
Eucgr.F04207 Eucalyptus grandis HOM05D000499 ORTHO05D007471 5.4e-19 97.8 126 39.7
Gohir.A05G133850 Gossypium hirsutum HOM05D000499 ORTHO05D011058 7.1e-19 97.4 50 80.0
Gohir.A06G035901 Gossypium hirsutum HOM05D000499 ORTHO05D011058 7.1e-19 97.4 50 80.0
Gohir.A09G088301 Gossypium hirsutum HOM05D000499 ORTHO05D011058 7.1e-19 97.4 50 80.0
Gohir.A12G143350 Gossypium hirsutum HOM05D000499 ORTHO05D011058 7.1e-19 97.4 50 80.0
CAN.G371.117 Capsicum annuum HOM05D000499 ORTHO05D007471 9.2e-19 97.1 132 39.4
AUR62033863 Chenopodium quinoa HOM05D000499 ORTHO05D007471 1.2e-18 96.7 56 71.4
ClCG05G019250 Citrullus lanatus HOM05D000499 ORTHO05D007471 1.2e-18 96.7 56 71.4
CDE02G3431 Ceratophyllum demersum HOM05D000370 ORTHO05D001335 2.1e-18 95.9 56 69.6
Nn1g03995 Nelumbo nucifera HOM05D000499 ORTHO05D007471 2.1e-18 95.9 56 71.4
Os01g0749100 Oryza sativa ssp. japonica HOM05D000499 ORTHO05D007471 2.1e-18 95.9 56 69.6
Sed0006245 Sechium edule HOM05D000499 ORTHO05D007471 2.1e-18 95.9 53 75.5
MSTRG.28296 Avicennia marina HOM05D000499 ORTHO05D007471 2.7e-18 95.5 124 41.1
Cc10_g03530 Coffea canephora HOM05D000499 ORTHO05D007471 2.7e-18 95.5 132 38.6
Zm00001eb213920 Zea mays HOM05D000499 ORTHO05D007471 2.7e-18 95.5 69 59.4
AUR62040075 Chenopodium quinoa HOM05D000499 ORTHO05D007471 3.5e-18 95.1 56 69.6
CDE01G0176 Ceratophyllum demersum HOM05D000499 ORTHO05D007471 4.6e-18 94.7 56 69.6
CsaV3_3G044830 Cucumis sativus L. HOM05D000499 ORTHO05D007471 4.6e-18 94.7 69 62.3
Nitab4.5_0009288g0030 Nicotiana tabacum HOM05D000499 ORTHO05D007471 4.6e-18 94.7 124 41.1
DCAR_020952 Daucus carota HOM05D000499 ORTHO05D007471 6.0e-18 94.4 129 40.3
Nitab4.5_0000110g0060 Nicotiana tabacum HOM05D000499 ORTHO05D007471 6.0e-18 94.4 131 38.9
Sed0012944 Sechium edule HOM05D000499 ORTHO05D007471 6.0e-18 94.4 55 69.1
PGSC0003DMG400016885 Solanum tuberosum HOM05D000499 ORTHO05D007471 6.0e-18 94.4 132 39.4
HanXRQChr09g0262371 Helianthus annuus HOM05D000499 ORTHO05D007471 1.7e-17 92.8 56 71.4
Sopen04g033350 Solanum pennellii HOM05D000499 ORTHO05D007471 1.7e-17 92.8 132 38.6
A09p42850 Brassica napus HOM05D000499 ORTHO05D011058 2.3e-17 92.4 88 63.6
Solyc04g079770.3 Solanum lycopersicum HOM05D000499 ORTHO05D007471 3.0e-17 92.0 132 38.6
MSTRG.9895 Avicennia marina HOM05D000499 ORTHO05D007471 5.1e-17 91.3 56 66.1
Os03g0769050 Oryza sativa ssp. japonica HOM05D000499 ORTHO05D007471 5.1e-17 91.3 56 62.5
SHI18077 Sapria himalayana HOM05D000499 ORTHO05D007471 8.7e-17 90.5 56 64.3
BcaB04g19839 Brassica carinata HOM05D000499 ORTHO05D011058 1.5e-16 89.7 75 68.0
SEGI_01316 Sequoiadendron giganteum HOM05D000499 ORTHO05D007471 3.3e-16 88.6 125 36.0
SEGI_20351 Sequoiadendron giganteum HOM05D000499 ORTHO05D007471 3.3e-16 88.6 125 36.0
AL4G18580 Arabidopsis lyrata HOM05D000499 ORTHO05D011058 5.6e-16 87.8 48 72.9
BcaB02g07334 Brassica carinata HOM05D000499 ORTHO05D011058 5.6e-16 87.8 46 84.8
BraA05t20523Z Brassica rapa HOM05D000499 ORTHO05D027942 9.6e-16 87.0 109 46.8
BcaNung03707 Brassica carinata HOM05D000499 ORTHO05D011058 1.2e-15 86.7 46 80.4
AagrBONN_evm.TU.Sc2ySwM_228.4977 Anthoceros agrestis HOM05D000499 ORTHO05D007471 3.6e-15 85.1 56 62.5
Gorai.011G198900 Gossypium raimondii HOM05D000499 ORTHO05D011058 4.7e-15 84.7 46 76.1
Mapoly0024s0007 Marchantia polymorpha HOM05D000499 ORTHO05D007471 2.0e-13 79.3 54 63.0
C03p69280 Brassica napus HOM05D055006 ORTHO05D011058 5.8e-13 77.8 41 82.9
SMO351G0006 Selaginella moellendorffii HOM05D000499 ORTHO05D007471 5.8e-13 77.8 56 55.4
MELO3C003891.2 Cucumis melo HOM05D000499 ORTHO05D007471 9.9e-13 77.0 46 69.6
Gohir.D08G062240 Gossypium hirsutum HOM05D000499 ORTHO05D011058 6.4e-12 74.3 39 79.5
Gorai.001G057300 Gossypium raimondii HOM05D000499 ORTHO05D011058 3.2e-11 72.0 39 76.9
BolC7t40678H Brassica oleracea HOM05D000499 ORTHO05D011058 4.2e-11 71.6 74 59.5
Pp3c14_23720 Physcomitrium patens HOM05D000499 ORTHO05D007471 2.7e-10 68.9 109 37.6
Gorai.N005500 Gossypium raimondii HOM05D000549 ORTHO05D012340 4.3e-08 61.6 34 67.6
BcaC06g36570 Brassica carinata HOM05D000499 ORTHO05D011058 5.6e-08 61.2 53 66.0
CARHR181570 Cardamine hirsuta HOM05D000499 ORTHO05D007471 2.1e-07 59.3 29 82.8
C07p02820 Brassica napus HOM05D000499 ORTHO05D027942 1.4e-06 56.6 51 52.9
Gohir.A08G008650 Gossypium hirsutum HOM05D000499 ORTHO05D011058 2.4e-06 55.8 29 79.3
Cpa.g.sc128.12 Carica papaya HOM05D000499 ORTHO05D002825 4.0e-06 55.1 57 38.6
AUR62008675 Chenopodium quinoa HOM05D000499 ORTHO05D002825 5.3e-06 54.7 87 37.9
TPR.G31819 Trifolium pratense HOM05D000499 ORTHO05D002825 6.9e-06 54.3 67 38.8
EL10Ac7g17521 Beta vulgaris HOM05D000499 ORTHO05D002825 9.0e-06 53.9 67 38.8


User provided reference genes

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