Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10533 Brassica carinata HOM05D000022 ORTHO05D001365 1.9e-144 515.8 256 100.0
A05p12360 Brassica napus HOM05D000022 ORTHO05D010270 4.2e-38 162.5 176 53.4
BraA05t20175Z Brassica rapa HOM05D001487 ORTHO05D010270 4.2e-38 162.5 176 53.4
BcaC02g11406 Brassica carinata HOM05D000022 ORTHO05D010270 4.6e-29 132.5 70 85.7
BolC4t23160H Brassica oleracea HOM05D000022 ORTHO05D010270 1.8e-28 130.6 106 62.3
C04p15890 Brassica napus HOM05D000022 ORTHO05D010270 2.3e-28 130.2 67 89.6
BolC4t23163H Brassica oleracea HOM05D000022 ORTHO05D010270 2.2e-23 113.6 69 76.8
BcaC02g11405 Brassica carinata HOM05D000022 ORTHO05D010270 1.9e-22 110.5 69 75.4
C04p15920 Brassica napus HOM05D000022 ORTHO05D010270 1.9e-22 110.5 69 75.4
A05p12370 Brassica napus HOM05D000022 ORTHO05D010270 1.2e-21 107.8 69 72.5
BraA05t20176Z Brassica rapa HOM05D000022 ORTHO05D010270 1.2e-21 107.8 69 72.5
BcaB02g10532 Brassica carinata HOM05D000022 ORTHO05D010270 1.3e-20 104.4 69 72.5
BcaB06g26445 Brassica carinata HOM05D000022 ORTHO05D010270 6.7e-20 102.1 68 70.6
A05p12300 Brassica napus HOM05D001487 ORTHO05D001365 6.3e-18 95.5 50 94.0
BraA05t20171Z Brassica rapa HOM05D001487 ORTHO05D001365 6.3e-18 95.5 50 94.0
BolC4t23159H Brassica oleracea HOM05D001487 ORTHO05D001365 1.4e-17 94.4 50 92.0
BcaB02g10534 Brassica carinata HOM05D001487 ORTHO05D001365 4.1e-17 92.8 50 90.0
A05p12420 Brassica napus HOM05D000022 ORTHO05D010270 4.1e-17 92.8 116 43.1
BcaB02g10535 Brassica carinata HOM05D001487 ORTHO05D001365 5.3e-17 92.4 50 90.0
BcaC02g11407 Brassica carinata HOM05D001487 ORTHO05D001365 5.3e-17 92.4 50 90.0
C04p15880 Brassica napus HOM05D001487 ORTHO05D001365 5.3e-17 92.4 50 90.0
BraA05t20183Z Brassica rapa HOM05D000022 ORTHO05D010270 6.9e-17 92.0 115 45.2
BcaC09g51046 Brassica carinata HOM05D000022 ORTHO05D010270 2.0e-16 90.5 68 60.3
A05p12430 Brassica napus HOM05D000022 ORTHO05D010270 2.0e-16 90.5 115 44.3
C04p16070 Brassica napus HOM05D000022 ORTHO05D010270 2.0e-16 90.5 116 43.1
BolC4t23180H Brassica oleracea HOM05D000022 ORTHO05D010270 2.0e-16 90.5 116 43.1
C04p16050 Brassica napus HOM05D000022 ORTHO05D010270 2.6e-16 90.1 68 58.8
BolC4t23178H Brassica oleracea HOM05D000022 ORTHO05D010270 2.6e-16 90.1 68 58.8
A01p14260 Brassica napus HOM05D000022 ORTHO05D010270 3.4e-16 89.7 104 43.3
BolC1t01693H Brassica oleracea HOM05D000022 ORTHO05D010270 3.4e-16 89.7 69 58.0
BraA01t01373Z Brassica rapa HOM05D000022 ORTHO05D010270 3.4e-16 89.7 104 43.3
BcaC02g11396 Brassica carinata HOM05D000022 ORTHO05D010270 4.5e-16 89.4 68 57.4
BcaC09g51043 Brassica carinata HOM05D000022 ORTHO05D010270 7.7e-16 88.6 68 58.8
BcaNung01006 Brassica carinata HOM05D000022 ORTHO05D010270 7.7e-16 88.6 68 58.8
A01p14250 Brassica napus HOM05D000022 ORTHO05D010270 1.0e-15 88.2 68 58.8
BraA01t01372Z Brassica rapa HOM05D000022 ORTHO05D010270 1.0e-15 88.2 68 58.8
C01p17520 Brassica napus HOM05D000022 ORTHO05D010270 2.2e-15 87.0 68 57.4
BcaC09g51044 Brassica carinata HOM05D000022 ORTHO05D010270 3.8e-15 86.3 76 53.9
Sp3g27510 Schrenkiella parvula HOM05D000022 ORTHO05D010270 3.8e-15 86.3 68 58.8
C01p17570 Brassica napus HOM05D000022 ORTHO05D010270 1.4e-14 84.3 68 57.4
Thhalv10022997m.g Eutrema salsugineum HOM05D000022 ORTHO05D010270 1.4e-14 84.3 67 56.7
Sp4g15490 Schrenkiella parvula HOM05D001487 ORTHO05D001365 1.9e-14 84.0 50 80.0
Sp4g15460 Schrenkiella parvula HOM05D000037 ORTHO05D000150 3.2e-14 83.2 103 48.5
BcaC07g40385 Brassica carinata HOM05D000022 ORTHO05D010270 5.5e-14 82.4 67 56.7
Thhalv10022331m.g Eutrema salsugineum HOM05D000022 ORTHO05D010270 5.5e-14 82.4 68 55.9
A01p14280 Brassica napus HOM05D000022 ORTHO05D010270 9.4e-14 81.6 68 55.9
BraA01t01374Z Brassica rapa HOM05D000022 ORTHO05D010270 9.4e-14 81.6 68 55.9
Carub.0003s2215 Capsella rubella HOM05D000022 ORTHO05D010270 1.2e-13 81.3 67 53.7
Thhalv10019551m.g Eutrema salsugineum HOM05D000022 ORTHO05D010270 1.6e-13 80.9 67 53.7
AT3G22050 Arabidopsis thaliana HOM05D000022 ORTHO05D010270 3.6e-13 79.7 67 50.7
C01p17560 Brassica napus HOM05D000022 ORTHO05D010270 3.6e-13 79.7 80 50.0
Carub.0004s1462 Capsella rubella HOM05D001487 ORTHO05D001365 6.1e-13 79.0 50 70.0
Carub.0003s2216 Capsella rubella HOM05D000022 ORTHO05D010270 1.4e-12 77.8 67 53.7
Carub.0003s2221 Capsella rubella HOM05D000022 ORTHO05D010270 1.4e-12 77.8 68 48.5
C04p15940 Brassica napus HOM05D000022 ORTHO05D010270 1.8e-12 77.4 109 40.4
Carub.0001s2935 Capsella rubella HOM05D000022 ORTHO05D010270 2.3e-12 77.0 67 52.2
A05p12380 Brassica napus HOM05D000022 ORTHO05D010270 5.1e-12 75.9 73 52.1
BolC4t23165H Brassica oleracea HOM05D000022 ORTHO05D010270 5.1e-12 75.9 73 52.1
BraA05t20177Z Brassica rapa HOM05D000022 ORTHO05D010270 5.1e-12 75.9 73 52.1
Carub.0003s2219 Capsella rubella HOM05D000022 ORTHO05D010270 5.1e-12 75.9 68 50.0
Thhalv10022212m.g Eutrema salsugineum HOM05D000022 ORTHO05D010270 5.1e-12 75.9 80 48.8
Carub.0003s2214 Capsella rubella HOM05D000022 ORTHO05D010270 6.7e-12 75.5 67 53.7
Carub.0003s2220 Capsella rubella HOM05D000022 ORTHO05D010270 6.7e-12 75.5 66 50.0
CARHR097900 Cardamine hirsuta HOM05D000022 ORTHO05D010270 1.1e-11 74.7 66 51.5
AT3G21980 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 1.5e-11 74.3 68 44.1
Carub.0003s2212 Capsella rubella HOM05D000022 ORTHO05D000306 1.5e-11 74.3 68 45.6
Carub.0003s2217 Capsella rubella HOM05D000022 ORTHO05D010270 5.7e-11 72.4 67 49.3
AT3G22040 Arabidopsis thaliana HOM05D000022 ORTHO05D010270 1.3e-10 71.2 67 47.8
Carub.0003s2218 Capsella rubella HOM05D000022 ORTHO05D010270 1.3e-10 71.2 65 50.8
A03p18610 Brassica napus HOM05D000037 ORTHO05D000150 2.2e-10 70.5 103 40.8
BraA03t11120Z Brassica rapa HOM05D000037 ORTHO05D000150 2.2e-10 70.5 103 40.8
Thhalv10022112m.g Eutrema salsugineum HOM05D000022 ORTHO05D010270 2.8e-10 70.1 67 49.3
BcaC01g05857 Brassica carinata HOM05D000037 ORTHO05D000150 6.3e-10 68.9 104 40.4
C03p21710 Brassica napus HOM05D000037 ORTHO05D000150 6.3e-10 68.9 104 40.4
BolC3t14554H Brassica oleracea HOM05D000037 ORTHO05D000150 6.3e-10 68.9 104 40.4
Carub.0003s2210 Capsella rubella HOM05D000022 ORTHO05D000306 6.3e-10 68.9 66 42.4
AL3G36210 Arabidopsis lyrata HOM05D000022 ORTHO05D010270 8.2e-10 68.6 68 45.6
Thhalv10022153m.g Eutrema salsugineum HOM05D000022 ORTHO05D010270 8.2e-10 68.6 67 52.2
AT2G33190 Arabidopsis thaliana HOM05D001487 ORTHO05D001365 1.8e-09 67.4 84 44.0
C04p15900 Brassica napus HOM05D001487 ORTHO05D001365 1.8e-09 67.4 50 70.0
AL3G36100 Arabidopsis lyrata HOM05D000022 ORTHO05D010289 2.4e-09 67.0 68 42.6
AL3G36200 Arabidopsis lyrata HOM05D000022 ORTHO05D000306 2.4e-09 67.0 92 35.9
AL4G28770 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 2.4e-09 67.0 50 60.0
AT3G21910 Arabidopsis thaliana HOM05D000022 ORTHO05D010289 2.4e-09 67.0 68 44.1
BcaB06g28655 Brassica carinata HOM05D000037 ORTHO05D000150 2.4e-09 67.0 84 42.9
AT4G20680 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 3.1e-09 66.6 68 42.6
Carub.0003s2203 Capsella rubella HOM05D000022 ORTHO05D000306 3.1e-09 66.6 68 41.2
AL3G38320 Arabidopsis lyrata HOM05D000022 ORTHO05D010270 5.3e-09 65.9 67 46.3
AT3G22000 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 9.1e-09 65.1 68 41.2
Thhalv10022150m.g Eutrema salsugineum HOM05D000022 ORTHO05D000306 9.1e-09 65.1 68 45.6
AT3G21990 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 1.2e-08 64.7 68 41.2
AT4G20530 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 1.2e-08 64.7 68 41.2
AT4G20540 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 1.2e-08 64.7 68 41.2
AT4G20550 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 1.2e-08 64.7 68 41.2
AT4G20560 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 1.2e-08 64.7 68 41.2
AT4G20570 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 1.2e-08 64.7 68 41.2
AT4G20580 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 1.2e-08 64.7 68 41.2
AT4G20590 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 1.2e-08 64.7 68 41.2
AT4G20600 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 1.2e-08 64.7 68 41.2
AT4G20610 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 1.2e-08 64.7 68 41.2
AT4G20620 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 1.2e-08 64.7 68 41.2
AT4G20630 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 1.2e-08 64.7 68 41.2
AT4G20640 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 1.2e-08 64.7 68 41.2
AT4G20645 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 1.2e-08 64.7 68 41.2
AT4G20670 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 1.2e-08 64.7 68 41.2
Carub.0003s2199 Capsella rubella HOM05D000022 ORTHO05D010289 1.2e-08 64.7 68 39.7
CARHR103590 Cardamine hirsuta HOM05D000022 ORTHO05D010270 1.2e-08 64.7 68 42.6
Carub.0003s2211 Capsella rubella HOM05D000022 ORTHO05D000306 2.6e-08 63.5 68 41.2
CARHR168670 Cardamine hirsuta HOM05D000022 ORTHO05D000306 2.6e-08 63.5 68 44.1
BcaC01g05854 Brassica carinata HOM05D001487 ORTHO05D001365 3.4e-08 63.2 51 62.7
C03p21750 Brassica napus HOM05D001487 ORTHO05D001365 3.4e-08 63.2 51 62.7
BolC3t14557H Brassica oleracea HOM05D001487 ORTHO05D001365 3.4e-08 63.2 51 62.7
A03p18630 Brassica napus HOM05D001487 ORTHO05D001365 4.5e-08 62.8 51 60.8
Carub.0003s2200 Capsella rubella HOM05D000022 ORTHO05D010289 7.7e-08 62.0 65 43.1
Sp5g04470 Schrenkiella parvula HOM05D000022 ORTHO05D000306 7.7e-08 62.0 66 40.9
AL3G36220 Arabidopsis lyrata HOM05D000022 ORTHO05D010270 1.0e-07 61.6 68 42.6
Carub.0003s2204 Capsella rubella HOM05D000022 ORTHO05D000306 1.0e-07 61.6 68 45.6
A04p25460 Brassica napus HOM05D000037 ORTHO05D000150 1.3e-07 61.2 81 40.7
BraA04t18049Z Brassica rapa HOM05D000037 ORTHO05D000150 1.3e-07 61.2 81 40.7
Carub.0003s2205 Capsella rubella HOM05D000022 ORTHO05D000306 1.3e-07 61.2 68 45.6
Sp5g14760 Schrenkiella parvula HOM05D000022 ORTHO05D010289 1.3e-07 61.2 63 44.4
AL3G36090 Arabidopsis lyrata HOM05D000022 ORTHO05D010289 1.7e-07 60.8 68 42.6
AT3G58310 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 2.2e-07 60.5 66 42.4
BcaC02g07858 Brassica carinata HOM05D000037 ORTHO05D000150 2.2e-07 60.5 81 38.3
BolC4t27742H Brassica oleracea HOM05D000037 ORTHO05D000150 2.2e-07 60.5 81 38.3
CARHR097870 Cardamine hirsuta HOM05D000022 ORTHO05D010289 2.2e-07 60.5 68 41.2
Thhalv10021973m.g Eutrema salsugineum HOM05D000022 ORTHO05D000306 2.9e-07 60.1 66 39.4
BcaB08g34700 Brassica carinata HOM05D000022 ORTHO05D000306 5.0e-07 59.3 68 44.1
A06p34230 Brassica napus HOM05D000022 ORTHO05D000306 5.0e-07 59.3 64 46.9
BraA06t26355Z Brassica rapa HOM05D000022 ORTHO05D000306 5.0e-07 59.3 64 46.9
BcaC01g02950 Brassica carinata HOM05D000022 ORTHO05D000306 6.5e-07 58.9 64 46.9
C03p57980 Brassica napus HOM05D000022 ORTHO05D000306 6.5e-07 58.9 64 46.9
BolC3t18070H Brassica oleracea HOM05D000022 ORTHO05D000306 6.5e-07 58.9 64 46.9
BcaC01g03467 Brassica carinata HOM05D000022 ORTHO05D012060 1.1e-06 58.2 73 39.7
C03p52160 Brassica napus HOM05D000022 ORTHO05D012060 1.1e-06 58.2 73 39.7
C04p16020 Brassica napus HOM05D000022 ORTHO05D010270 1.1e-06 58.2 29 86.2
BolC3t17495H Brassica oleracea HOM05D000022 ORTHO05D012060 1.1e-06 58.2 73 39.7
Thhalv10017793m.g Eutrema salsugineum HOM05D001487 ORTHO05D001365 1.4e-06 57.8 54 59.3
AL5G40040 Arabidopsis lyrata HOM05D000022 ORTHO05D000306 1.9e-06 57.4 66 39.4
BcaB04g20550 Brassica carinata HOM05D000022 ORTHO05D010289 1.9e-06 57.4 64 37.5
BcaB04g20551 Brassica carinata HOM05D000022 ORTHO05D010289 1.9e-06 57.4 64 37.5
BcaC09g49139 Brassica carinata HOM05D000022 ORTHO05D010289 1.9e-06 57.4 64 37.5
C01p42200 Brassica napus HOM05D000022 ORTHO05D010289 1.9e-06 57.4 64 37.5
C04p62600 Brassica napus HOM05D000037 ORTHO05D000150 1.9e-06 57.4 81 38.3
BolC1t04181H Brassica oleracea HOM05D000022 ORTHO05D010289 1.9e-06 57.4 64 37.5
Thhalv10017543m.g Eutrema salsugineum HOM05D001487 ORTHO05D001365 1.9e-06 57.4 52 59.6
Thhalv10021968m.g Eutrema salsugineum HOM05D000022 ORTHO05D012060 1.9e-06 57.4 68 41.2
Sp3g19880 Schrenkiella parvula HOM05D000022 ORTHO05D010270 1.9e-06 57.4 68 41.2
BcaC05g28113 Brassica carinata HOM05D000022 ORTHO05D010289 2.5e-06 57.0 68 41.2
A01p33060 Brassica napus HOM05D000022 ORTHO05D010289 2.5e-06 57.0 64 37.5
A03p42560 Brassica napus HOM05D000022 ORTHO05D012060 2.5e-06 57.0 73 39.7
C05p41440 Brassica napus HOM05D000022 ORTHO05D010289 2.5e-06 57.0 68 41.2
BolC5t32882H Brassica oleracea HOM05D000022 ORTHO05D010289 2.5e-06 57.0 68 41.2
BraA01t03428Z Brassica rapa HOM05D000022 ORTHO05D010289 2.5e-06 57.0 64 37.5
Carub.0005s2512 Capsella rubella HOM05D000022 ORTHO05D000306 2.5e-06 57.0 66 39.4
Sed0022806 Sechium edule HOM05D000022 ORTHO05D000071 2.5e-06 57.0 59 44.1
Carub.0003s2213 Capsella rubella HOM05D000022 ORTHO05D000306 3.2e-06 56.6 67 38.8
Thhalv10017763m.g Eutrema salsugineum HOM05D000037 ORTHO05D000150 3.2e-06 56.6 104 38.5
BcaC01g03471 Brassica carinata HOM05D000022 ORTHO05D012060 4.2e-06 56.2 73 39.7
A05p26860 Brassica napus HOM05D000022 ORTHO05D010289 4.2e-06 56.2 68 39.7
C03p52130 Brassica napus HOM05D000022 ORTHO05D012060 4.2e-06 56.2 73 39.7
BolC3t17492H Brassica oleracea HOM05D000022 ORTHO05D012060 4.2e-06 56.2 73 39.7
BraA05t21565Z Brassica rapa HOM05D000022 ORTHO05D010289 4.2e-06 56.2 68 39.7
CARHR145910 Cardamine hirsuta HOM05D001487 ORTHO05D001365 4.2e-06 56.2 54 61.1
AL4G28780 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 5.5e-06 55.8 50 58.0
AL4G28800 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 5.5e-06 55.8 53 58.5
AT3G22010 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 5.5e-06 55.8 68 38.2
A03p42550 Brassica napus HOM05D000022 ORTHO05D012060 5.5e-06 55.8 73 39.7
BraA03t13405Z Brassica rapa HOM05D000022 ORTHO05D012060 5.5e-06 55.8 73 39.7
CARHR127170 Cardamine hirsuta HOM05D001487 ORTHO05D001365 5.5e-06 55.8 41 63.4
COL.COLO4_31707 Corchorus olitorius HOM05D000022 ORTHO05D000071 7.2e-06 55.5 68 36.8
AL8G17590 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 9.4e-06 55.1 51 56.9


User provided reference genes

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