Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10506 Brassica carinata HOM05D000172 ORTHO05D004529 4.8e-70 267.7 133 100.0
A05p12720 Brassica napus HOM05D000172 ORTHO05D004529 1.3e-46 189.9 101 94.1
C04p16640 Brassica napus HOM05D000172 ORTHO05D004529 1.3e-46 189.9 101 94.1
BolC4t23214H Brassica oleracea HOM05D000172 ORTHO05D004529 1.3e-46 189.9 101 94.1
BraA05t20211Z Brassica rapa HOM05D000172 ORTHO05D004529 6.3e-46 187.6 101 93.1
Sp4g15280 Schrenkiella parvula HOM05D000172 ORTHO05D004529 1.4e-45 186.4 101 91.1
BcaC01g05872 Brassica carinata HOM05D000172 ORTHO05D004529 2.4e-45 185.7 101 91.1
Thhalv10016663m.g Eutrema salsugineum HOM05D000172 ORTHO05D004529 4.1e-45 184.9 101 91.1
C03p21560 Brassica napus HOM05D000172 ORTHO05D004529 1.2e-44 183.3 101 90.1
AL4G28440 Arabidopsis lyrata HOM05D000172 ORTHO05D004529 2.6e-44 182.2 101 89.1
AT2G32920 Arabidopsis thaliana HOM05D000172 ORTHO05D004529 2.6e-44 182.2 101 89.1
BcaB01g03946 Brassica carinata HOM05D000172 ORTHO05D004529 5.9e-44 181.0 101 89.1
CARHR126850 Cardamine hirsuta HOM05D000172 ORTHO05D004529 5.0e-43 177.9 101 87.1
Carub.0004s1435 Capsella rubella HOM05D000172 ORTHO05D004529 8.5e-43 177.2 101 87.1
Aa31LG5G4580 Aethionema arabicum HOM05D000172 ORTHO05D004529 1.2e-41 173.3 101 85.1
Thhalv10007682m.g Eutrema salsugineum HOM05D000172 ORTHO05D004529 1.8e-40 169.5 100 84.0
Sp1g03850 Schrenkiella parvula HOM05D000172 ORTHO05D004529 1.8e-40 169.5 100 84.0
AL1G14710 Arabidopsis lyrata HOM05D000172 ORTHO05D004529 2.3e-40 169.1 96 87.5
AT1G04980 Arabidopsis thaliana HOM05D000172 ORTHO05D004529 5.2e-40 167.9 96 87.5
Aa31LG1G19810 Aethionema arabicum HOM05D000172 ORTHO05D004529 6.7e-40 167.5 101 80.2
THA.LOC104826128 Tarenaya hassleriana HOM05D000172 ORTHO05D004529 2.6e-39 165.6 101 80.2
C05p03170 Brassica napus HOM05D000172 ORTHO05D004529 3.3e-39 165.2 100 81.0
BolC5t29097H Brassica oleracea HOM05D000172 ORTHO05D004529 3.3e-39 165.2 100 81.0
CARHR004390 Cardamine hirsuta HOM05D000172 ORTHO05D004529 3.3e-39 165.2 100 82.0
Carub.0001s0422 Capsella rubella HOM05D000172 ORTHO05D004529 5.7e-39 164.5 100 81.0
Thecc.01G183900 Theobroma cacao HOM05D000172 ORTHO05D004529 1.3e-38 163.3 101 78.2
A10p03460 Brassica napus HOM05D000172 ORTHO05D004529 1.7e-38 162.9 100 80.0
BraA10t42622Z Brassica rapa HOM05D000172 ORTHO05D004529 1.7e-38 162.9 100 80.0
MSTRG.14127 Avicennia marina HOM05D000172 ORTHO05D004529 2.8e-38 162.2 101 78.2
Duzib133G0852 Durio zibethinus HOM05D000172 ORTHO05D004529 3.7e-38 161.8 101 77.2
Duzib138G0538 Durio zibethinus HOM05D000172 ORTHO05D004529 3.7e-38 161.8 101 77.2
Dinv08710 Davidia involucrata HOM05D000172 ORTHO05D004529 4.8e-38 161.4 97 80.4
Cpa.g.sc132.36 Carica papaya HOM05D000172 ORTHO05D004529 1.4e-37 159.8 101 77.2
Gohir.D11G159300 Gossypium hirsutum HOM05D000172 ORTHO05D004529 1.4e-37 159.8 101 76.2
Gorai.007G169700 Gossypium raimondii HOM05D000172 ORTHO05D004529 1.4e-37 159.8 101 76.2
THA.LOC104801013 Tarenaya hassleriana HOM05D000172 ORTHO05D004529 1.4e-37 159.8 97 79.4
Lj1A784T46 Lonicera japonica HOM05D000172 ORTHO05D004529 1.8e-37 159.5 101 76.2
CSS0041321 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D004529 2.4e-37 159.1 101 74.3
COL.COLO4_07252 Corchorus olitorius HOM05D000172 ORTHO05D004529 2.4e-37 159.1 101 75.2
Zm00001eb100620 Zea mays HOM05D000172 ORTHO05D004529 2.4e-37 159.1 101 75.2
Migut.H01249 Erythranthe guttata HOM05D000172 ORTHO05D004529 3.1e-37 158.7 101 76.2
MBI16_g26178_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D004529 4.1e-37 158.3 101 76.2
Potri.014G160000 Populus trichocarpa HOM05D000172 ORTHO05D004529 4.1e-37 158.3 101 76.2
Rhsim06G0169300 Rhododendron simsii HOM05D000172 ORTHO05D004529 4.1e-37 158.3 101 74.3
AUR62015115 Chenopodium quinoa HOM05D000172 ORTHO05D004529 5.3e-37 157.9 101 75.2
Sc12g0002030 Simmondsia chinensis HOM05D000172 ORTHO05D004529 5.3e-37 157.9 101 76.2
GSVIVG01030525001 Vitis vinifera HOM05D000172 ORTHO05D004529 5.3e-37 157.9 101 74.3
Zm00001eb314620 Zea mays HOM05D000172 ORTHO05D004529 5.3e-37 157.9 101 74.3
Actinidia09754 Actinidia chinensis HOM05D000172 ORTHO05D004529 7.0e-37 157.5 101 76.2
Gohir.A11G152400 Gossypium hirsutum HOM05D000172 ORTHO05D004529 7.0e-37 157.5 101 75.2
ATR1128G012 Amborella trichopoda HOM05D000172 ORTHO05D004529 9.1e-37 157.1 101 75.2
Aqoxy1G02876 Aquilegia oxysepala HOM05D000172 ORTHO05D004529 1.2e-36 156.8 101 75.2
EL10Ac9g22817 Beta vulgaris HOM05D000172 ORTHO05D004529 1.2e-36 156.8 101 75.2
CSS0045460 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D004529 1.6e-36 156.4 101 74.3
AUR62017578 Chenopodium quinoa HOM05D000172 ORTHO05D004529 1.6e-36 156.4 101 74.3
Gohir.D07G174500 Gossypium hirsutum HOM05D000172 ORTHO05D004529 1.6e-36 156.4 101 73.3
Gorai.001G195100 Gossypium raimondii HOM05D000172 ORTHO05D004529 1.6e-36 156.4 101 73.3
Hma1.2p1_0445F.1_g154200 Hydrangea macrophylla HOM05D000172 ORTHO05D004529 1.6e-36 156.4 101 73.3
Hma1.2p1_2840F.1_g329340 Hydrangea macrophylla HOM05D000172 ORTHO05D004529 1.6e-36 156.4 101 73.3
MD17G1107800 Malus domestica HOM05D000172 ORTHO05D004529 1.6e-36 156.4 101 74.3
SalBow1G3887 Salvia bowleyana HOM05D000172 ORTHO05D004529 1.6e-36 156.4 99 74.7
SalBow1G7178 Salvia bowleyana HOM05D000172 ORTHO05D004529 1.6e-36 156.4 99 74.7
FAN02G0745 Fragaria x ananassa HOM05D000172 ORTHO05D004529 2.0e-36 156.0 101 74.3
FAN09G3260 Fragaria x ananassa HOM05D000172 ORTHO05D004529 2.0e-36 156.0 101 74.3
Hund24209 Selenicereus undatus HOM05D000172 ORTHO05D004529 2.0e-36 156.0 101 75.2
Gohir.A07G168200 Gossypium hirsutum HOM05D000172 ORTHO05D004529 2.6e-36 155.6 101 73.3
SGA_v2.0_scaffold49G18360 Striga asiatica HOM05D000172 ORTHO05D004529 2.6e-36 155.6 101 75.2
MSTRG.14865 Avicennia marina HOM05D000172 ORTHO05D004529 3.5e-36 155.2 101 72.3
Cfa014306 Carpinus fangiana HOM05D000172 ORTHO05D004529 3.5e-36 155.2 101 73.3
Haze_12753 Corylus avellana HOM05D000172 ORTHO05D004529 3.5e-36 155.2 101 74.3
FvH4_6g41940 Fragaria vesca HOM05D000172 ORTHO05D004529 3.5e-36 155.2 101 74.3
FAN14G3661 Fragaria x ananassa HOM05D000172 ORTHO05D004529 3.5e-36 155.2 101 74.3
Manes.12G068300 Manihot esculenta HOM05D000172 ORTHO05D004529 3.5e-36 155.2 101 74.3
QL08p030114 Quercus lobata HOM05D000172 ORTHO05D004529 3.5e-36 155.2 101 74.3
Lsat_1_v5_gn_9_105181 Lactuca sativa HOM05D000172 ORTHO05D004529 4.5e-36 154.8 101 75.2
MD09G1116100 Malus domestica HOM05D000172 ORTHO05D004529 4.5e-36 154.8 101 73.3
RcHm_v2.0_Chr2g0157821 Rosa chinensis HOM05D000172 ORTHO05D004529 4.5e-36 154.8 101 73.3
TAR624G0902 Trochodendron aralioides HOM05D000172 ORTHO05D004529 4.5e-36 154.8 101 73.3
Atru.chr6.3272 Acer truncatum HOM05D000172 ORTHO05D004529 7.7e-36 154.1 101 73.3
ClCG02G018150 Citrullus lanatus HOM05D000172 ORTHO05D004529 7.7e-36 154.1 101 74.3
Prupe.3G208600 Prunus persica HOM05D000172 ORTHO05D004529 7.7e-36 154.1 101 71.3
Ah.14g083060 Amaranthus hybridus HOM05D000172 ORTHO05D004529 1.0e-35 153.7 101 73.3
HanXRQChr14g0429281 Helianthus annuus HOM05D000172 ORTHO05D004529 1.0e-35 153.7 101 73.3
PGR142G0986 Punica granatum HOM05D000172 ORTHO05D004529 1.0e-35 153.7 101 72.3
TWI18G0101 Tripterygium wilfordii HOM05D000172 ORTHO05D004529 1.0e-35 153.7 101 71.3
Ciclev10015327m.g Citrus clementina HOM05D000172 ORTHO05D004529 1.3e-35 153.3 101 74.3
arahy.Tifrunner.gnm1.ann1.0SG038 Arachis hypogaea HOM05D000172 ORTHO05D004529 1.7e-35 152.9 101 72.3
arahy.Tifrunner.gnm1.ann1.0YR97U Arachis hypogaea HOM05D000172 ORTHO05D004529 1.7e-35 152.9 101 72.3
Nitab4.5_0000130g0060 Nicotiana tabacum HOM05D000172 ORTHO05D004529 1.7e-35 152.9 99 75.8
Sabra14G0121700 Salix brachista HOM05D000172 ORTHO05D004529 1.7e-35 152.9 101 73.3
unitig_578.g16013 Utricularia gibba HOM05D000172 ORTHO05D004529 3.8e-35 151.8 101 71.3
Glyma.02G266900 Glycine max HOM05D000172 ORTHO05D004529 5.0e-35 151.4 101 72.3
Nn1g07319 Nelumbo nucifera HOM05D000172 ORTHO05D004529 5.0e-35 151.4 101 73.3
Oeu010999.1 Olea europaea HOM05D000172 ORTHO05D004529 5.0e-35 151.4 101 70.3
Solyc07g049450.3 Solanum lycopersicum HOM05D000172 ORTHO05D004529 5.0e-35 151.4 101 72.3
Sopen07g024800 Solanum pennellii HOM05D000172 ORTHO05D004529 5.0e-35 151.4 101 72.3
TWI36G0304 Tripterygium wilfordii HOM05D000172 ORTHO05D004529 5.0e-35 151.4 101 73.3
TWI75G1599 Tripterygium wilfordii HOM05D000172 ORTHO05D004529 5.0e-35 151.4 101 72.3
CANSAT64G0513 Cannabis sativa HOM05D000172 ORTHO05D004529 8.5e-35 150.6 101 72.3
CiPaw.03G153600 Carya illinoinensis HOM05D000172 ORTHO05D004529 8.5e-35 150.6 101 72.3
MELO3C019722.2 Cucumis melo HOM05D000172 ORTHO05D004529 8.5e-35 150.6 99 73.7
DCAR_021129 Daucus carota HOM05D000172 ORTHO05D004529 1.1e-34 150.2 99 75.8
vmacro12149 Vaccinium macrocarpon HOM05D000172 ORTHO05D004529 1.5e-34 149.8 98 72.4
Lalb_Chr04g0250171 Lupinus albus HOM05D000172 ORTHO05D004529 1.9e-34 149.4 101 70.3
Nn1g03356 Nelumbo nucifera HOM05D000172 ORTHO05D004529 1.9e-34 149.4 101 71.3
PGSC0003DMG400000661 Solanum tuberosum HOM05D000172 ORTHO05D004529 1.9e-34 149.4 101 71.3
Lalb_Chr10g0105541 Lupinus albus HOM05D000172 ORTHO05D004529 2.5e-34 149.1 101 69.3
Oeu054513.2 Olea europaea HOM05D000172 ORTHO05D004529 2.5e-34 149.1 101 70.3
Phvul.008G215100 Phaseolus vulgaris HOM05D000172 ORTHO05D004529 4.2e-34 148.3 101 70.3
Ca_06051_v3 Cicer arietinum L. HOM05D000172 ORTHO05D004529 5.5e-34 147.9 101 71.3
Sed0015934 Sechium edule HOM05D000172 ORTHO05D004529 5.5e-34 147.9 101 69.3
HPP92_018301 Vanilla planifolia HOM05D000172 ORTHO05D004529 5.5e-34 147.9 101 68.3
VMungo0647G1522 Vigna mungo HOM05D000172 ORTHO05D004529 5.5e-34 147.9 101 68.3
CAN.G1254.2 Capsicum annuum HOM05D000172 ORTHO05D004529 7.2e-34 147.5 101 71.3
ECA240G4132 Erigeron canadensis HOM05D002544 ORTHO05D004529 7.2e-34 147.5 101 71.3
Glyma.14G050600 Glycine max HOM05D000172 ORTHO05D004529 7.2e-34 147.5 101 71.3
Medtr5g084930 Medicago truncatula HOM05D000172 ORTHO05D004529 7.2e-34 147.5 101 69.3
CiPaw.04G108900 Carya illinoinensis HOM05D000172 ORTHO05D004529 9.4e-34 147.1 101 70.3
CsaV3_6G015540 Cucumis sativus L. HOM05D000172 ORTHO05D004529 9.4e-34 147.1 101 70.3
Eucgr.K00732 Eucalyptus grandis HOM05D000172 ORTHO05D004529 1.6e-33 146.4 101 68.3
PSO210G3915 Papaver somniferum HOM05D000172 ORTHO05D004529 1.6e-33 146.4 101 70.3
Peaxi162Scf01333g00016 Petunia axillaris HOM05D000172 ORTHO05D004529 2.1e-33 146.0 97 74.2
DCAR_019739 Daucus carota HOM05D000172 ORTHO05D004529 2.7e-33 145.6 101 71.3
TPR.G25669 Trifolium pratense HOM05D000172 ORTHO05D004529 2.7e-33 145.6 101 69.3
Psat2g026680 Pisum sativum HOM05D000172 ORTHO05D004529 3.6e-33 145.2 101 68.3
PSO832G1111 Papaver somniferum HOM05D000172 ORTHO05D004529 6.1e-33 144.4 97 73.2
Lsat_1_v5_gn_2_16921 Lactuca sativa HOM05D000172 ORTHO05D004529 8.0e-33 144.1 96 74.0
TAR629G0025 Trochodendron aralioides HOM05D000172 ORTHO05D004529 8.0e-33 144.1 95 73.7
CDE04G1854 Ceratophyllum demersum HOM05D000172 ORTHO05D004529 1.4e-32 143.3 100 67.0
CDE07G0353 Ceratophyllum demersum HOM05D000172 ORTHO05D004529 1.4e-32 143.3 100 66.0
Lsat_1_v5_gn_1_87821 Lactuca sativa HOM05D000172 ORTHO05D004529 1.8e-32 142.9 97 73.2
LjContig00029g0026614 Lotus japonicus HOM05D000172 ORTHO05D004529 1.8e-32 142.9 101 66.3
Cc05_g02520 Coffea canephora HOM05D000172 ORTHO05D004529 5.2e-32 141.4 90 75.6
SMO146G0260 Selaginella moellendorffii HOM05D000172 ORTHO05D004529 2.0e-31 139.4 97 69.1
VMungo0331G0799 Vigna mungo HOM05D000172 ORTHO05D004529 3.4e-31 138.7 99 67.7
Lalb_Chr17g0347161 Lupinus albus HOM05D000172 ORTHO05D004529 7.5e-31 137.5 97 70.1
SHI10092 Sapria himalayana HOM05D000172 ORTHO05D004529 1.3e-30 136.7 97 68.0
AagrBONN_evm.TU.Sc2ySwM_117.284 Anthoceros agrestis HOM05D000172 ORTHO05D004529 2.7e-28 129.0 101 58.4
HPP92_018317 Vanilla planifolia HOM05D000172 ORTHO05D004529 4.5e-28 128.3 84 71.4
Pp3c4_12030 Physcomitrium patens HOM05D000172 ORTHO05D004529 5.9e-28 127.9 99 61.6
Mapoly0041s0078 Marchantia polymorpha HOM05D000172 ORTHO05D004529 9.4e-26 120.6 101 61.4
Oeu025371.1 Olea europaea HOM05D000172 ORTHO05D004529 8.0e-25 117.5 80 70.0
FAN05G4236 Fragaria x ananassa HOM05D000172 ORTHO05D004529 4.0e-24 115.2 75 74.7
Lj8A130T58 Lonicera japonica HOM05D000172 ORTHO05D004529 6.8e-24 114.4 85 68.2
FAN03G0606 Fragaria x ananassa HOM05D000172 ORTHO05D004529 7.5e-15 84.3 57 71.9
Sed0016451 Sechium edule HOM05D000172 ORTHO05D004529 1.7e-14 83.2 57 70.2
Os09g0451500 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D004529 2.8e-14 82.4 57 68.4
Cre07.g328150 Chlamydomonas reinhardtii HOM05D000172 ORTHO05D004529 1.1e-13 80.5 106 39.6
Lsat_1_v5_gn_6_104180 Lactuca sativa HOM05D000172 ORTHO05D004529 3.2e-13 79.0 44 81.8
Lsat_1_v5_gn_3_66661 Lactuca sativa HOM05D000172 ORTHO05D004529 9.2e-13 77.4 44 79.5
Lsat_1_v5_gn_4_114760 Lactuca sativa HOM05D000172 ORTHO05D004529 9.2e-13 77.4 44 79.5
Lsat_1_v5_gn_7_56041 Lactuca sativa HOM05D000172 ORTHO05D004529 1.2e-12 77.0 44 79.5
Haze_27390 Corylus avellana HOM05D000172 ORTHO05D004529 1.0e-08 63.9 100 34.0
Pp3c12_19050 Physcomitrium patens HOM05D000172 ORTHO05D004529 2.3e-08 62.8 79 46.8
Sc12g0008410 Simmondsia chinensis HOM05D000172 ORTHO05D388069 8.9e-08 60.8 50 58.0
CBR_g42180 Chara braunii HOM05D000172 ORTHO05D004529 2.6e-07 59.3 53 49.1


User provided reference genes

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