Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 0.0e+00 1411.4 754 100.0
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 0.0e+00 1315.8 771 90.9
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 0.0e+00 1313.5 772 91.3
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 0.0e+00 1309.3 763 91.6
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 0.0e+00 1296.6 757 88.9
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 0.0e+00 1291.2 757 88.8
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 0.0e+00 1278.1 755 87.7
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 0.0e+00 1275.8 755 86.9
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 0.0e+00 1273.1 755 90.3
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 0.0e+00 1265.4 778 85.0
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 0.0e+00 1264.6 778 84.8
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 0.0e+00 1260.7 756 86.6
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 0.0e+00 1255.4 756 86.0
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 0.0e+00 1232.6 754 84.9
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 0.0e+00 1223.0 753 83.5
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 0.0e+00 1191.0 753 80.7
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 0.0e+00 1177.9 731 84.7
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 0.0e+00 1172.9 729 84.6
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 0.0e+00 1131.3 757 76.9
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 1.7e-273 946.0 777 63.7
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 5.0e-273 944.5 762 63.4
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 7.4e-269 930.6 762 64.4
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 1.8e-267 926.0 760 64.1
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 2.2e-265 919.1 761 63.6
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 4.0e-262 908.3 757 63.0
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 1.2e-261 906.7 761 61.6
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 5.3e-259 897.9 764 61.6
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 2.0e-258 896.0 769 61.6
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 2.7e-258 895.6 756 61.5
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 1.0e-257 893.6 763 62.3
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 1.0e-257 893.6 756 62.4
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 2.2e-257 892.5 756 62.6
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 1.1e-256 890.2 759 62.8
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 8.8e-254 880.6 767 60.8
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 5.7e-253 877.9 756 61.2
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 1.4e-251 873.2 761 60.7
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.2e-250 870.2 756 60.8
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 3.5e-250 868.6 773 59.8
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 5.9e-250 867.8 766 60.3
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 1.3e-249 866.7 757 60.2
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 1.9e-248 862.8 762 59.8
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 4.2e-248 861.7 757 60.2
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 2.1e-247 859.4 761 58.3
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 1.2e-245 853.6 767 60.8
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 5.7e-245 851.3 765 59.2
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 7.5e-245 850.9 749 60.9
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 1.3e-244 850.1 808 57.3
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.8e-244 849.0 755 59.3
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.2e-242 843.6 767 58.1
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 4.5e-242 841.6 763 59.8
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 5.9e-242 841.3 731 61.6
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 1.0e-241 840.5 729 61.6
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 2.5e-240 835.9 785 59.2
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 3.6e-239 832.0 762 58.0
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 1.4e-238 830.1 762 57.3
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 1.8e-238 829.7 736 59.2
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 1.1e-235 820.5 762 56.6
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 1.9e-235 819.7 760 56.8
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 3.2e-235 818.9 761 59.0
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 9.2e-235 817.4 761 56.5
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 1.6e-234 816.6 717 60.3
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 8.6e-233 810.8 764 57.6
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 1.2e-231 807.0 759 56.1
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 1.4e-230 803.5 762 56.2
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 2.3e-230 802.7 772 55.7
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 3.1e-230 802.4 758 57.4
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 1.5e-229 800.0 759 55.6
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 8.3e-228 794.3 770 55.2
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 8.3e-228 794.3 764 54.1
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 4.1e-227 792.0 682 61.9
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 1.6e-226 790.0 761 55.8
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 1.7e-225 786.6 761 54.8
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 2.5e-224 782.7 759 54.2
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 1.8e-222 776.5 761 55.3
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 5.8e-221 771.5 763 56.1
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 1.1e-219 767.3 783 52.9
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 2.1e-218 763.1 774 54.0
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 4.4e-213 745.3 578 68.0
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 9.9e-213 744.2 794 51.4
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 4.6e-210 735.3 577 65.7
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 3.0e-209 732.6 736 54.1
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 2.1e-207 726.5 767 51.5
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 3.8e-204 715.7 758 50.9
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 2.4e-203 713.0 737 54.4
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 5.1e-201 705.3 727 54.6
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 3.3e-200 702.6 759 50.7
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 5.8e-197 691.8 568 64.1
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 2.7e-194 682.9 757 51.8
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 1.0e-193 681.0 567 63.3
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 3.3e-192 676.0 565 63.0
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 7.4e-192 674.9 564 62.6
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 9.6e-192 674.5 755 47.5
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 9.0e-190 667.9 762 48.8
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 3.9e-185 652.5 633 54.5
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 7.4e-184 648.3 758 49.7
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 6.2e-183 645.2 579 57.9
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 3.8e-180 636.0 576 58.9
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 1.4e-179 634.0 568 59.0
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 7.1e-179 631.7 758 47.5
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 7.1e-179 631.7 649 52.7
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 2.4e-174 616.7 519 63.0
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 9.0e-174 614.8 744 48.1
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 3.3e-168 596.3 529 59.5
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.0e-165 587.0 462 66.5
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 9.4e-163 578.2 529 59.9
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 4.4e-160 569.3 762 44.0
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 1.8e-150 537.3 505 56.8
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 1.8e-150 537.3 631 46.4
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.0e-149 533.9 528 54.0
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 2.8e-143 513.5 781 38.9
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 1.2e-120 438.3 437 53.1
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 2.3e-116 424.1 335 65.1
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 3.3e-115 420.2 558 45.7
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 6.2e-114 416.0 485 50.3
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 1.1e-107 395.2 328 64.0
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 2.3e-105 387.5 378 55.8
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 2.2e-103 380.9 286 66.8
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 7.1e-102 375.9 808 31.3
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 1.4e-97 361.7 287 65.5
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 8.7e-92 342.4 731 30.9
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 5.6e-91 339.7 281 62.3
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 2.2e-87 327.8 272 65.1
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 1.4e-86 325.1 479 42.4
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 2.4e-78 297.7 754 28.6
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 1.8e-76 291.6 230 66.5
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 1.8e-65 255.0 357 39.5
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 5.3e-65 253.4 175 70.9
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 5.5e-62 243.4 216 57.9
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 1.9e-59 235.0 650 27.5
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 8.8e-52 209.5 217 49.8
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 2.9e-47 194.5 182 56.0
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 2.0e-43 181.8 136 69.1
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 2.2e-42 178.3 241 42.7
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 1.6e-40 172.2 183 54.1
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 5.7e-35 153.7 419 30.5
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 7.5e-35 153.3 227 42.7
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.7e-34 151.0 419 30.3
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 6.1e-29 133.7 106 67.9
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 8.5e-23 113.2 85 68.2
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 3.6e-21 107.8 135 43.0
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 4.0e-20 104.4 85 61.2
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 7.5e-19 100.1 80 65.0
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.6e-16 92.4 76 61.8
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 1.7e-15 89.0 119 44.5
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.4e-12 79.3 162 35.2
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-11 75.9 87 41.4
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.5e-11 75.9 215 27.0
PRCOL_00004220 Prasinoderma coloniale HOM05D004734 ORTHO05D006019 4.6e-08 64.3 450 21.3
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 1.7e-07 62.4 87 42.5
SHI10093 Sapria himalayana HOM05D004734 ORTHO05D006019 1.9e-06 58.9 72 43.1


User provided reference genes

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