Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10481 Brassica carinata HOM05D008171 ORTHO05D006541 1.1e-164 583.2 297 100.0
C04p17400 Brassica napus HOM05D008171 ORTHO05D006541 1.4e-141 506.5 297 88.2
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 1.4e-141 506.5 297 88.2
BraA05t20241Z Brassica rapa HOM05D008171 ORTHO05D006541 7.8e-137 490.7 298 86.6
A05p13010 Brassica napus HOM05D008171 ORTHO05D006541 2.3e-133 479.2 297 85.2
Thhalv10016999m.g Eutrema salsugineum HOM05D008171 ORTHO05D006541 4.3e-111 405.2 311 73.6
Sp4g14600 Schrenkiella parvula HOM05D008171 ORTHO05D006541 1.1e-103 380.6 339 66.1
BcaC01g05917 Brassica carinata HOM05D008171 ORTHO05D006541 1.5e-103 380.2 331 68.9
BolC3t14492H Brassica oleracea HOM05D008171 ORTHO05D006541 1.4e-101 373.6 345 65.8
AT2G32235 Arabidopsis thaliana HOM05D008171 ORTHO05D006541 5.3e-101 371.7 319 69.3
C03p21100 Brassica napus HOM05D008171 ORTHO05D006541 7.6e-100 367.9 331 67.4
Carub.0004s1355 Capsella rubella HOM05D008171 ORTHO05D006541 3.8e-99 365.5 314 68.8
AL4G27600 Arabidopsis lyrata HOM05D008171 ORTHO05D006541 2.4e-98 362.8 316 69.0
A03p18070 Brassica napus HOM05D008171 ORTHO05D006541 7.1e-98 361.3 331 65.6
CARHR126020 Cardamine hirsuta HOM05D008171 ORTHO05D006541 2.1e-94 349.7 303 68.0
BcaB01g03996 Brassica carinata HOM05D008171 ORTHO05D006541 5.3e-93 345.1 331 65.3
Aa31LG5G4300 Aethionema arabicum HOM05D008171 ORTHO05D006541 2.5e-87 326.2 319 63.3
BraA03t11066Z Brassica rapa HOM05D008171 ORTHO05D006541 6.2e-78 295.0 344 55.5
THA.LOC104826159 Tarenaya hassleriana HOM05D008171 ORTHO05D006541 3.0e-72 276.2 304 57.2
Manes.03G156600 Manihot esculenta HOM05D008171 ORTHO05D006541 4.1e-21 106.3 317 31.9
TWI09G0902 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 4.1e-21 106.3 254 34.6
Gorai.007G269300 Gossypium raimondii HOM05D008171 ORTHO05D006541 7.8e-20 102.1 299 30.8
Gohir.A11G241700 Gossypium hirsutum HOM05D008171 ORTHO05D006541 1.0e-19 101.7 292 31.2
Gohir.D11G251100 Gossypium hirsutum HOM05D008171 ORTHO05D006541 1.3e-19 101.3 299 30.1
Cpa.g.sc59.27 Carica papaya HOM05D008171 ORTHO05D006541 1.5e-18 97.8 296 30.4
Thecc.04G268400 Theobroma cacao HOM05D008171 ORTHO05D006541 1.5e-18 97.8 280 31.8
ClCG09G011900 Citrullus lanatus HOM05D008171 ORTHO05D006541 2.5e-18 97.1 230 33.9
Duzib177G0581 Durio zibethinus HOM05D008171 ORTHO05D006541 5.6e-18 95.9 292 29.8
TWI09G1485 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 1.6e-17 94.4 318 30.5
COL.COLO4_08914 Corchorus olitorius HOM05D008171 ORTHO05D006541 4.7e-17 92.8 295 30.5
Sabra04G0016000 Salix brachista HOM05D008171 ORTHO05D006541 1.0e-16 91.7 302 29.5
Potri.004G028100 Populus trichocarpa HOM05D008171 ORTHO05D006541 4.0e-16 89.7 241 30.7
Dinv29788 Davidia involucrata HOM05D008171 ORTHO05D006541 4.4e-15 86.3 190 33.2
Prupe.1G051700 Prunus persica HOM05D013250 ORTHO05D006541 7.5e-15 85.5 226 30.1
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 2.2e-14 84.0 43 90.7
Rhsim07G0050800 Rhododendron simsii HOM05D008171 ORTHO05D006541 4.9e-14 82.8 249 30.9
Haze_11490 Corylus avellana HOM05D008171 ORTHO05D006541 1.1e-13 81.6 336 29.5
MSTRG.14227 Avicennia marina HOM05D014524 ORTHO05D006541 5.4e-13 79.3 256 31.2
FAN22G0719 Fragaria x ananassa HOM05D013250 ORTHO05D006541 1.2e-12 78.2 230 29.6
Cc03_g06490 Coffea canephora HOM05D008171 ORTHO05D006541 1.6e-12 77.8 324 25.9
Actinidia31699 Actinidia chinensis HOM05D008171 ORTHO05D006541 3.5e-12 76.6 300 26.7
COL.COLO4_36427 Corchorus olitorius HOM05D008171 ORTHO05D006541 3.9e-11 73.2 294 26.5
Phvul.008G026200 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 6.6e-11 72.4 248 27.8
Atru.chr3.807 Acer truncatum HOM05D008171 ORTHO05D006541 8.6e-11 72.0 224 29.0
CsaV3_3G049130 Cucumis sativus L. HOM05D008171 ORTHO05D006541 1.1e-10 71.6 240 28.3
Lj1g0024023 Lotus japonicus HOM05D008729 ORTHO05D006541 1.9e-10 70.9 210 30.5
Sabra18G0128500 Salix brachista HOM05D008171 ORTHO05D006541 3.3e-10 70.1 136 32.4
Sopen05g005780 Solanum pennellii HOM05D008171 ORTHO05D006541 5.6e-10 69.3 97 35.1
SGA_v2.0_scaffold31G12622 Striga asiatica HOM05D014524 ORTHO05D006541 5.6e-10 69.3 274 28.8
Sed0013719 Sechium edule HOM05D008171 ORTHO05D006541 1.6e-09 67.8 228 29.4
CiPaw.01G175900 Carya illinoinensis HOM05D008171 ORTHO05D006541 3.6e-09 66.6 84 38.1
PGSC0003DMG400000820 Solanum tuberosum HOM05D008171 ORTHO05D006541 3.6e-09 66.6 131 32.8
VMungo1383G3710 Vigna mungo HOM05D008729 ORTHO05D006541 4.7e-09 66.2 240 26.7
Migut.N00307 Erythranthe guttata HOM05D014524 ORTHO05D006541 1.4e-08 64.7 310 26.5
Phvul.008G045500 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 1.8e-08 64.3 234 28.6
Nitab4.5_0004705g0050 Nicotiana tabacum HOM05D008171 ORTHO05D006541 2.3e-08 63.9 126 29.4
Glyma.18G253500 Glycine max HOM05D008729 ORTHO05D006541 8.9e-08 62.0 220 29.5
SalBow8G4971 Salvia bowleyana HOM05D014524 ORTHO05D006541 2.0e-07 60.8 229 27.1
Thecc.05G282200 Theobroma cacao HOM05D008171 ORTHO05D006541 2.0e-07 60.8 76 31.6
Cfa014809 Carpinus fangiana HOM05D008171 ORTHO05D006541 2.6e-07 60.5 321 28.0
PGR119G2083 Punica granatum HOM05D008729 ORTHO05D006541 2.6e-07 60.5 262 26.0
Nitab4.5_0009780g0020 Nicotiana tabacum HOM05D008171 ORTHO05D006541 5.8e-07 59.3 112 30.4
SGA_v2.0_scaffold577G53017 Striga asiatica HOM05D014524 ORTHO05D006541 1.7e-06 57.8 270 24.8
COL.COLO4_37412 Corchorus olitorius HOM05D008171 ORTHO05D006541 6.4e-06 55.8 48 41.7
Thhalv10017245m.g Eutrema salsugineum HOM05D012655 ORTHO05D014861 8.3e-06 55.5 265 26.0


User provided reference genes

Program Settings