Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 2.2e-79 298.9 150 100.0
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 2.4e-78 295.4 150 98.7
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 2.4e-78 295.4 150 98.7
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 1.2e-77 293.1 150 98.0
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 8.6e-76 287.0 150 95.3
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.1e-75 286.6 150 94.0
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 1.5e-75 286.2 162 91.4
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 3.3e-75 285.0 150 94.0
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.1e-74 282.3 149 91.9
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 6.2e-74 280.8 150 92.0
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.6e-69 266.2 150 85.3
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 2.0e-69 265.8 149 87.2
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.0e-68 263.5 150 86.0
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.3e-68 262.3 150 84.7
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 9.5e-67 256.9 150 84.0
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 2.1e-66 255.8 150 84.0
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 6.2e-66 254.2 150 82.0
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 6.8e-65 250.8 150 81.3
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 2.6e-64 248.8 157 80.3
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.7e-63 246.1 150 79.3
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.7e-63 246.1 150 80.0
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 1.7e-63 246.1 147 76.9
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.9e-63 245.4 149 79.2
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 3.7e-63 245.0 150 76.0
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 3.7e-63 245.0 150 76.0
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 3.7e-63 245.0 150 76.0
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 4.9e-63 244.6 160 77.5
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 4.9e-63 244.6 150 75.3
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 9.2e-62 240.4 161 77.0
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 1.6e-61 239.6 150 76.7
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 7.8e-61 237.3 150 74.0
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 3.9e-60 235.0 150 74.0
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 4.3e-59 231.5 150 72.0
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 5.6e-59 231.1 150 75.3
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 5.6e-59 231.1 150 74.0
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 2.1e-58 229.2 150 72.0
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 2.1e-58 229.2 147 73.5
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 8.1e-58 227.3 146 74.0
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 1.1e-57 226.9 150 72.7
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 1.8e-57 226.1 146 74.0
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 2.4e-57 225.7 150 72.0
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 4.0e-57 224.9 150 72.0
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 1.7e-55 219.5 150 70.0
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 2.2e-55 219.2 150 70.7
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 1.9e-54 216.1 135 75.6
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.4e-54 215.7 150 66.7
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 3.2e-54 215.3 150 66.7
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 4.1e-54 214.9 149 67.1
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 7.1e-54 214.2 150 64.7
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 1.6e-53 213.0 147 68.0
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 1.6e-53 213.0 150 66.7
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 2.1e-53 212.6 150 67.3
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 2.7e-53 212.2 147 66.0
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 3.5e-53 211.8 147 66.7
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 7.8e-53 210.7 107 96.3
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 7.8e-53 210.7 147 67.3
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 1.0e-52 210.3 181 58.0
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 1.3e-52 209.9 150 68.0
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 1.7e-52 209.5 150 66.0
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 2.3e-52 209.1 147 67.3
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 2.3e-52 209.1 150 63.3
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 3.9e-52 208.4 146 63.7
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 5.1e-52 208.0 150 65.3
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 5.1e-52 208.0 150 66.0
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 5.1e-52 208.0 148 66.2
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 5.1e-52 208.0 150 64.0
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 1.1e-51 206.8 147 64.6
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 1.1e-51 206.8 149 64.4
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.1e-51 206.8 150 66.0
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 1.5e-51 206.5 150 63.3
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 1.9e-51 206.1 147 63.3
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 1.9e-51 206.1 147 65.3
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 1.9e-51 206.1 147 64.6
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.9e-51 206.1 150 63.3
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.9e-51 206.1 150 63.3
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 2.5e-51 205.7 147 64.6
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 7.3e-51 204.1 147 66.0
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 1.2e-50 203.4 145 66.2
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 1.6e-50 203.0 147 64.6
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.8e-50 202.2 143 65.0
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 6.2e-50 201.1 143 64.3
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 6.2e-50 201.1 143 64.3
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 6.2e-50 201.1 143 64.3
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 8.1e-50 200.7 148 63.5
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 8.1e-50 200.7 147 63.9
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 8.1e-50 200.7 147 63.9
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 8.1e-50 200.7 145 63.4
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 8.1e-50 200.7 145 63.4
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.8e-49 199.5 143 63.6
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 2.4e-49 199.1 147 64.6
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 2.4e-49 199.1 147 63.3
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 3.1e-49 198.7 150 63.3
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 3.1e-49 198.7 150 62.7
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 3.1e-49 198.7 149 60.4
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 3.1e-49 198.7 147 63.9
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 6.9e-49 197.6 147 60.5
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 1.2e-48 196.8 149 60.4
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 1.2e-48 196.8 143 67.1
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.5e-48 196.4 147 64.6
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 2.0e-48 196.1 150 60.7
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.0e-48 196.1 152 62.5
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 2.6e-48 195.7 147 61.2
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 5.8e-48 194.5 144 64.6
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 5.8e-48 194.5 144 64.6
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 5.8e-48 194.5 147 61.2
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 7.6e-48 194.1 147 61.9
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 7.6e-48 194.1 147 60.5
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 7.6e-48 194.1 142 63.4
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 9.9e-48 193.7 147 63.3
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.3e-47 193.4 144 63.9
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 3.8e-47 191.8 149 58.4
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 3.8e-47 191.8 150 58.7
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 3.8e-47 191.8 139 61.9
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 1.1e-46 190.3 147 60.5
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 1.4e-46 189.9 150 60.7
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.9e-46 189.5 144 63.2
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 1.9e-46 189.5 148 60.1
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 2.4e-46 189.1 150 60.0
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 3.2e-46 188.7 147 59.2
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 3.2e-46 188.7 144 62.5
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 4.2e-46 188.3 170 57.1
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 7.1e-46 187.6 149 61.1
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 1.6e-45 186.4 150 59.3
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 1.6e-45 186.4 150 59.3
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 2.7e-45 185.7 137 64.2
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 2.7e-45 185.7 158 55.7
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 7.8e-45 184.1 151 68.2
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 1.7e-44 183.0 143 61.5
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 2.3e-44 182.6 139 60.4
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 3.0e-44 182.2 141 62.4
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 3.9e-44 181.8 151 58.9
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 5.1e-44 181.4 143 60.1
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 5.1e-44 181.4 143 60.1
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 1.1e-43 180.3 222 45.0
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 2.5e-43 179.1 148 60.8
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 3.3e-43 178.7 151 63.6
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.4e-41 172.6 143 55.9
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.3e-39 166.8 190 45.8
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 1.1e-38 163.7 142 59.9
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 1.5e-35 153.3 147 51.0
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 3.7e-34 148.7 105 64.8
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 3.7e-34 148.7 108 61.1
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 3.7e-34 148.7 108 61.1
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 1.1e-33 147.1 129 57.4
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 1.1e-33 147.1 129 57.4
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 4.0e-33 145.2 89 76.4
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 2.6e-32 142.5 147 49.7
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 4.5e-32 141.7 89 78.7
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 2.9e-31 139.0 103 67.0
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 8.4e-31 137.5 89 71.9
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.1e-29 132.9 89 71.9
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.3e-28 130.2 133 48.9
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 5.1e-28 128.3 145 44.8
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 4.8e-26 121.7 103 59.2
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 8.2e-26 120.9 82 65.9
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 3.1e-25 119.0 91 59.3
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 3.1e-25 119.0 144 43.1
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 1.0e-23 114.0 86 57.0
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 3.8e-23 112.1 147 41.5
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 5.5e-22 108.2 133 40.6
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 1.0e-20 104.0 138 35.5
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 1.2e-16 90.5 52 80.8
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.5e-16 90.1 136 28.7
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 2.6e-16 89.4 144 37.5
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 5.0e-15 85.1 72 55.6
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.2e-14 82.4 139 28.1
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 2.7e-13 79.3 39 87.2
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 4.6e-13 78.6 101 37.6
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 1.4e-12 77.0 85 45.9
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.9e-12 75.5 104 30.8
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 2.8e-10 69.3 130 26.9
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 2.4e-09 66.2 127 25.2
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.0e-08 63.2 81 40.7
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 7.7e-08 61.2 82 43.9
BcaC02g08825 Brassica carinata HOM05D003922 ORTHO05D031941 1.0e-07 60.8 49 65.3
BolC4t26594H Brassica oleracea HOM05D003922 ORTHO05D031941 2.2e-07 59.7 49 63.3
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.2e-07 59.7 46 63.0
C04p50010 Brassica napus HOM05D003922 ORTHO05D031941 2.9e-07 59.3 49 63.3
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 1.1e-06 57.4 133 24.1


User provided reference genes

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