Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10392 Brassica carinata HOM05D008213 ORTHO05D009787 4.2e-227 791.2 445 100.0
A05p14130 Brassica napus HOM05D008213 ORTHO05D009787 5.5e-195 684.5 457 84.0
BraA05t20342Z Brassica rapa HOM05D008213 ORTHO05D009787 5.5e-195 684.5 457 84.0
BcaC02g11256 Brassica carinata HOM05D008213 ORTHO05D009787 5.7e-192 674.5 457 84.0
BolC4t23398H Brassica oleracea HOM05D008213 ORTHO05D009787 5.7e-192 674.5 457 84.0
C04p18480 Brassica napus HOM05D008213 ORTHO05D009787 2.8e-191 672.2 458 84.5
Sp4g13940 Schrenkiella parvula HOM05D008213 ORTHO05D009787 2.0e-149 533.1 483 65.2
Thhalv10017539m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 3.1e-145 519.2 485 63.7
AL4G26740 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 9.2e-142 507.7 484 62.2
C04p60980 Brassica napus HOM05D008213 ORTHO05D009787 1.2e-138 497.3 473 64.5
AT2G31480 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 1.4e-134 483.8 479 60.5
BraA04t17943Z Brassica rapa HOM05D008213 ORTHO05D009787 1.9e-134 483.4 469 64.0
Carub.0004s1279 Capsella rubella HOM05D008213 ORTHO05D009787 7.0e-134 481.5 484 61.0
A04p24240 Brassica napus HOM05D008213 ORTHO05D009787 1.7e-132 476.9 469 63.1
CARHR125120 Cardamine hirsuta HOM05D008213 ORTHO05D009787 1.4e-129 467.2 480 61.0
BcaB02g10393 Brassica carinata HOM05D008213 ORTHO05D009787 3.5e-125 452.6 460 60.9
BcaC02g11257 Brassica carinata HOM05D008213 ORTHO05D009787 7.8e-125 451.4 459 63.6
BcaB06g28538 Brassica carinata HOM05D008213 ORTHO05D009787 1.4e-118 430.6 472 61.4
BcaC02g07992 Brassica carinata HOM05D008213 ORTHO05D009787 3.0e-116 422.9 422 63.3
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 2.5e-99 366.7 457 52.5
Thhalv10009329m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 6.2e-90 335.5 491 47.5
Sp1g04730 Schrenkiella parvula HOM05D008213 ORTHO05D009787 2.4e-89 333.6 482 46.7
AL1G15840 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 1.1e-86 324.7 491 47.9
Aa31LG1G8440 Aethionema arabicum HOM05D008213 ORTHO05D009787 7.1e-86 322.0 479 46.1
Carub.0001s0526 Capsella rubella HOM05D008213 ORTHO05D009787 1.6e-85 320.9 479 47.6
AT1G05894 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 7.9e-85 318.5 471 47.8
CARHR005430 Cardamine hirsuta HOM05D008213 ORTHO05D009787 1.0e-84 318.2 475 46.9
THA.LOC104826192 Tarenaya hassleriana HOM05D008213 ORTHO05D009787 7.7e-80 302.0 497 42.7
C08p02290 Brassica napus HOM05D008213 ORTHO05D009787 1.2e-77 294.7 476 44.5
A08p36230 Brassica napus HOM05D008213 ORTHO05D009787 1.8e-76 290.8 478 45.0
BolC8t47021H Brassica oleracea HOM05D008213 ORTHO05D009787 5.1e-76 289.3 476 44.1
BraA08t35527Z Brassica rapa HOM05D008213 ORTHO05D009787 2.4e-73 280.4 478 44.1
BcaC07g36821 Brassica carinata HOM05D008213 ORTHO05D009787 7.7e-72 275.4 465 42.8
Dinv44200 Davidia involucrata HOM05D008213 ORTHO05D009787 4.9e-26 123.2 204 35.3
Thecc.04G185000 Theobroma cacao HOM05D008213 ORTHO05D009787 1.7e-23 114.8 520 27.1
Duzib151G0756 Durio zibethinus HOM05D008213 ORTHO05D009787 3.3e-22 110.5 209 34.9
Hma1.2p1_0754F.1_g213080 Hydrangea macrophylla HOM05D008213 ORTHO05D009787 1.7e-18 98.2 214 36.0
Prupe.1G190600 Prunus persica HOM05D008213 ORTHO05D009787 3.7e-18 97.1 422 27.7
Manes.11G119400 Manihot esculenta HOM05D008213 ORTHO05D009787 2.4e-17 94.4 194 37.6
TAR362G1061 Trochodendron aralioides HOM05D008213 ORTHO05D009787 1.6e-16 91.7 194 34.0
Gorai.005G020000 Gossypium raimondii HOM05D008213 ORTHO05D009787 1.7e-15 88.2 211 31.3
QL10p048331 Quercus lobata HOM05D008213 ORTHO05D009787 8.6e-15 85.9 489 24.5
Gohir.D02G016500 Gossypium hirsutum HOM05D008213 ORTHO05D009787 1.5e-14 85.1 238 30.3
Cpa.g.sc71.7 Carica papaya HOM05D008213 ORTHO05D009787 3.3e-14 84.0 433 25.4
Ciclev10023340m.g Citrus clementina HOM05D008213 ORTHO05D009787 7.3e-14 82.8 191 35.6
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 1.2e-13 82.0 238 30.3
COL.COLO4_24404 Corchorus olitorius HOM05D008213 ORTHO05D009787 1.4e-12 78.6 211 32.2
PGR142G1601 Punica granatum HOM05D008213 ORTHO05D009787 4.0e-12 77.0 464 24.8
CiPaw.01G101800 Carya illinoinensis HOM05D008213 ORTHO05D009787 7.6e-11 72.8 195 30.3
Potri.007G127200 Populus trichocarpa HOM05D008213 ORTHO05D009787 9.9e-11 72.4 457 27.8
DCAR_017617 Daucus carota HOM05D008213 ORTHO05D009787 2.9e-10 70.9 192 28.6
ECA233G5141 Erigeron canadensis HOM05D008213 ORTHO05D009787 3.7e-10 70.5 259 27.0
RcHm_v2.0_Chr4g0407081 Rosa chinensis HOM05D008213 ORTHO05D009787 3.7e-10 70.5 429 27.0
Aqoxy5G00188 Aquilegia oxysepala HOM05D008213 ORTHO05D009787 1.9e-09 68.2 190 29.5
Glyma.12G053300 Glycine max HOM05D010840 ORTHO05D009787 2.4e-09 67.8 265 28.7
Atru.chr3.1539 Acer truncatum HOM05D008213 ORTHO05D009787 7.1e-09 66.2 125 40.0
GSVIVG01010744001 Vitis vinifera HOM05D008213 ORTHO05D009787 1.6e-08 65.1 241 30.3
Glyma.11G128800 Glycine max HOM05D010840 ORTHO05D009787 6.6e-07 59.7 226 30.5
ClCG07G015580 Citrullus lanatus HOM05D008213 ORTHO05D009787 1.5e-06 58.5 180 25.6
ECA248G0875 Erigeron canadensis HOM05D000554 ORTHO05D000860 5.6e-06 56.6 189 31.7
CSS0004350 Camellia sinensis var. sinensis HOM05D008213 ORTHO05D009787 9.6e-06 55.8 192 24.0


User provided reference genes

Program Settings