Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 4.0e-176 621.3 309 100.0
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 4.9e-158 561.2 309 91.6
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 5.4e-157 557.8 308 91.2
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 3.5e-156 555.1 311 90.7
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 4.5e-156 554.7 311 91.0
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 5.0e-155 551.2 309 90.6
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 2.8e-153 545.4 329 86.0
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.1e-149 533.5 307 88.3
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 8.0e-145 517.3 309 85.1
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 5.8e-143 511.1 312 83.0
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 3.2e-141 505.4 311 82.3
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 6.0e-140 501.1 308 82.1
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 1.6e-137 493.0 309 83.8
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 1.6e-129 466.5 309 75.1
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 5.8e-119 431.4 271 77.9
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 1.3e-118 430.3 277 76.5
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 2.9e-118 429.1 254 79.1
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 3.8e-118 428.7 305 69.5
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 3.8e-118 428.7 244 81.1
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 6.4e-118 427.9 269 78.8
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 6.4e-118 427.9 269 78.8
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 8.4e-118 427.6 274 74.8
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.2e-117 425.6 292 73.3
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 3.2e-117 425.6 314 70.1
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 5.4e-117 424.9 244 81.1
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 5.4e-117 424.9 299 69.9
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 9.3e-117 424.1 256 77.7
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.2e-116 423.7 248 80.2
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 1.2e-116 423.7 241 82.6
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 1.2e-116 423.7 241 82.6
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 1.6e-116 423.3 305 68.2
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 2.1e-116 422.9 246 80.1
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.7e-116 422.5 243 81.1
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 3.5e-116 422.2 303 68.3
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 4.6e-116 421.8 288 69.4
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 6.0e-116 421.4 303 69.3
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 6.0e-116 421.4 316 66.1
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 7.9e-116 421.0 243 79.8
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 1.3e-115 420.2 240 82.1
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 1.3e-115 420.2 242 81.0
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 1.3e-115 420.2 247 78.1
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 3.9e-115 418.7 293 71.3
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 5.1e-115 418.3 283 70.3
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 6.6e-115 417.9 242 78.5
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 2.5e-114 416.0 253 76.7
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 7.3e-114 414.5 285 71.6
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 7.3e-114 414.5 272 72.1
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 7.3e-114 414.5 275 71.3
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 9.6e-114 414.1 242 78.9
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 1.3e-113 413.7 246 78.0
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.6e-113 413.3 242 78.9
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 2.1e-113 412.9 296 69.9
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 2.1e-113 412.9 265 73.6
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 3.6e-113 412.1 284 71.1
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 8.1e-113 411.0 246 78.5
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 8.1e-113 411.0 280 70.0
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 3.1e-112 409.1 242 78.1
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 3.1e-112 409.1 302 67.9
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 4.0e-112 408.7 286 68.9
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 5.3e-112 408.3 250 74.8
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 5.3e-112 408.3 242 78.1
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 6.9e-112 407.9 241 77.6
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 1.2e-111 407.1 282 70.2
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 1.2e-111 407.1 268 73.1
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.5e-111 406.8 242 78.1
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 5.8e-111 404.8 242 77.3
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 7.6e-111 404.4 265 74.0
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 3.8e-110 402.1 305 67.2
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.8e-110 402.1 261 74.3
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 4.9e-110 401.7 242 77.3
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 8.4e-110 401.0 244 75.4
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 1.9e-109 399.8 252 74.2
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 1.9e-109 399.8 242 76.0
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 3.2e-109 399.1 256 73.0
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 4.2e-109 398.7 288 68.1
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 3.5e-108 395.6 254 72.4
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 6.0e-108 394.8 281 68.3
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 2.3e-107 392.9 286 67.5
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 2.3e-107 392.9 248 72.2
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 8.7e-107 391.0 248 71.8
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 8.7e-107 391.0 280 68.6
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.1e-106 390.6 213 85.9
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 4.3e-106 388.7 258 69.0
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 7.4e-106 387.9 244 73.4
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 9.6e-106 387.5 242 74.0
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 1.6e-105 386.7 271 68.6
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 6.2e-105 384.8 247 71.7
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 1.1e-104 384.0 244 73.0
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 5.3e-104 381.7 294 65.3
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 7.6e-103 377.9 276 66.3
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 2.2e-102 376.3 295 63.7
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 6.5e-102 374.8 248 73.0
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 8.4e-102 374.4 269 70.3
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 2.5e-101 372.9 359 54.9
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 5.5e-101 371.7 301 61.5
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 3.5e-100 369.0 212 80.2
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 2.3e-99 366.3 256 69.5
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 1.5e-98 363.6 238 74.4
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 6.2e-97 358.2 264 68.2
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 5.0e-94 348.6 241 69.7
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 4.2e-93 345.5 446 46.2
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 9.3e-93 344.4 337 54.9
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.0e-91 340.9 262 68.3
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 1.3e-91 340.5 248 66.5
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 3.9e-91 339.0 278 62.6
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 3.7e-89 332.4 281 57.7
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 2.0e-87 326.6 212 75.0
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 1.4e-85 320.5 255 64.3
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.4e-85 320.5 267 56.9
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 6.3e-81 305.1 246 63.4
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 9.1e-80 301.2 234 65.8
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 1.7e-78 297.0 226 71.7
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 8.2e-73 278.1 213 60.6
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 4.1e-72 275.8 167 76.6
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 4.1e-72 275.8 247 52.2
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 2.7e-68 263.1 177 72.3
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 1.5e-66 257.3 251 52.2
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 3.3e-66 256.1 165 73.3
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 2.8e-65 253.1 267 47.2
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 9.1e-64 248.1 159 72.3
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 1.2e-60 237.7 141 78.0
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 2.3e-59 233.4 310 39.4
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.3e-57 227.6 140 79.3
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 8.3e-57 224.9 206 58.3
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 7.7e-55 218.4 250 52.0
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 1.0e-54 218.0 191 58.6
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 1.5e-53 214.2 136 80.1
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 1.5e-53 214.2 136 80.1
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 7.2e-53 211.8 137 71.5
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 6.1e-52 208.8 113 87.6
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 1.8e-51 207.2 244 44.7
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 2.3e-51 206.8 132 72.7
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 4.9e-49 199.1 164 66.5
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 4.9e-49 199.1 222 49.1
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 2.7e-47 193.4 126 73.0
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 2.3e-46 190.3 109 78.9
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 3.8e-46 189.5 146 65.1
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 3.6e-44 183.0 110 76.4
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 3.6e-44 183.0 106 78.3
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 8.9e-43 178.3 99 78.8
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 5.9e-39 165.6 234 37.2
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.3e-37 159.8 92 78.3
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 2.1e-36 157.1 242 36.8
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 8.9e-35 151.8 245 37.1
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 2.6e-34 150.2 117 59.8
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 7.5e-34 148.7 82 80.5
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 2.0e-31 140.6 76 82.9
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 1.0e-30 138.3 152 51.3
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 5.0e-30 136.0 77 77.9
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 6.8e-27 125.6 88 72.7
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 2.6e-26 123.6 75 69.3
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 3.7e-25 119.8 66 77.3
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 8.6e-22 108.6 59 81.4
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 3.3e-21 106.7 65 81.5
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 4.3e-21 106.3 56 78.6
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.1e-19 101.7 68 69.1
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.1e-19 101.7 244 28.3
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 2.9e-17 93.6 113 52.2
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 7.1e-16 89.0 47 83.0
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 1.0e-14 85.1 48 77.1
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 1.5e-13 81.3 45 82.2
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 5.6e-13 79.3 114 38.6
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.6e-12 77.8 61 47.5
CARHR124880 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.0e-10 70.9 86 52.3
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 1.4e-08 64.7 110 34.5


User provided reference genes

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