Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10328 Brassica carinata HOM05D008517 ORTHO05D010482 2.0e-164 582.4 301 100.0
A05p14960 Brassica napus HOM05D008517 ORTHO05D010482 4.6e-153 544.7 301 93.0
BraA05t20422Z Brassica rapa HOM05D008517 ORTHO05D010482 4.6e-153 544.7 301 93.0
BolC4t23540H Brassica oleracea HOM05D008517 ORTHO05D010482 7.8e-153 543.9 302 94.0
BcaC02g11142 Brassica carinata HOM05D008517 ORTHO05D010482 1.7e-152 542.7 301 93.7
C04p20010 Brassica napus HOM05D008517 ORTHO05D010482 1.7e-152 542.7 301 93.7
Sp4g13060 Schrenkiella parvula HOM05D008517 ORTHO05D010482 2.4e-125 452.6 326 78.2
Thhalv10016822m.g Eutrema salsugineum HOM05D008517 ORTHO05D010482 4.9e-123 444.9 322 76.7
CARHR123960 Cardamine hirsuta HOM05D008517 ORTHO05D010482 3.0e-120 435.6 313 76.0
BraA04t17851Z Brassica rapa HOM05D008517 ORTHO05D010482 2.5e-119 432.6 305 76.7
BcaC02g08016 Brassica carinata HOM05D008517 ORTHO05D010482 3.7e-118 428.7 305 76.1
C04p59390 Brassica napus HOM05D008517 ORTHO05D010482 3.7e-118 428.7 305 76.1
BolC4t27447H Brassica oleracea HOM05D008517 ORTHO05D010482 3.7e-118 428.7 305 76.1
BcaB06g28372 Brassica carinata HOM05D008517 ORTHO05D010482 1.4e-117 426.8 307 76.2
A04p23240 Brassica napus HOM05D008517 ORTHO05D010482 3.1e-117 425.6 305 75.7
Carub.0004s1167 Capsella rubella HOM05D008517 ORTHO05D010482 1.7e-115 419.9 322 71.4
AT2G30505 Arabidopsis thaliana HOM05D008517 ORTHO05D010482 1.4e-112 410.2 305 73.1
AL4G25390 Arabidopsis lyrata HOM05D008517 ORTHO05D010482 3.9e-112 408.7 318 72.3
Aa31LG5G6260 Aethionema arabicum HOM05D008517 ORTHO05D010482 2.8e-73 279.6 328 53.4
THA.LOC104800796 Tarenaya hassleriana HOM05D008517 ORTHO05D010482 1.3e-54 217.6 303 43.6
Cpa.g.sc2.275 Carica papaya HOM05D008517 ORTHO05D010482 6.2e-41 172.2 202 43.6
Eucgr.J01845 Eucalyptus grandis HOM05D008517 ORTHO05D010482 3.6e-25 119.8 246 33.3
Manes.02G211300 Manihot esculenta HOM05D008517 ORTHO05D010482 8.1e-25 118.6 159 39.0
Lj6g0010191 Lotus japonicus HOM05D008517 ORTHO05D010482 7.6e-23 112.1 203 33.5
Actinidia23156 Actinidia chinensis HOM05D000033 ORTHO05D000913 2.2e-22 110.5 195 32.3
Psat5g147520 Pisum sativum HOM05D008517 ORTHO05D010482 2.1e-20 104.0 215 31.6
Medtr3g062470 Medicago truncatula HOM05D008517 ORTHO05D010482 4.6e-20 102.8 209 31.6
MELO3C020481.2 Cucumis melo HOM05D008517 ORTHO05D010482 1.0e-19 101.7 198 31.8
CSS0018299 Camellia sinensis var. sinensis HOM05D008517 ORTHO05D010482 3.9e-19 99.8 209 30.1
TPR.G13887 Trifolium pratense HOM05D008517 ORTHO05D010482 8.7e-19 98.6 193 33.2
Dinv12288 Davidia involucrata HOM05D008517 ORTHO05D010482 1.1e-18 98.2 186 32.3
TAR633G1539 Trochodendron aralioides HOM05D000050 ORTHO05D010482 1.1e-18 98.2 198 32.8
PGR119G1844 Punica granatum HOM05D008517 ORTHO05D010482 1.5e-18 97.8 191 39.8
Ca_15071_v3 Cicer arietinum L. HOM05D008517 ORTHO05D010482 1.9e-18 97.4 237 28.3
Lalb_Chr18g0054121 Lupinus albus HOM05D008517 ORTHO05D010482 3.3e-18 96.7 201 30.3
Rhsim13G0058200 Rhododendron simsii HOM05D008517 ORTHO05D010482 7.4e-18 95.5 252 27.8
Lalb_Chr15g0085691 Lupinus albus HOM05D008517 ORTHO05D010482 9.6e-18 95.1 203 28.1
MD11G1051900 Malus domestica HOM05D016692 ORTHO05D010482 1.6e-17 94.4 197 28.9
arahy.Tifrunner.gnm1.ann1.92WL97 Arachis hypogaea HOM05D008517 ORTHO05D010482 2.1e-17 94.0 248 27.4
Prupe.6G039500 Prunus persica HOM05D016692 ORTHO05D010482 2.1e-17 94.0 199 29.1
Phvul.006G080100 Phaseolus vulgaris HOM05D008517 ORTHO05D010482 3.7e-17 93.2 208 32.2
arahy.Tifrunner.gnm1.ann1.Q24W9G Arachis hypogaea HOM05D008517 ORTHO05D010482 4.8e-17 92.8 248 27.4
ClCG03G000030 Citrullus lanatus HOM05D008517 ORTHO05D010482 1.1e-16 91.7 230 27.4
Glyma.18G051200 Glycine max HOM05D008517 ORTHO05D010482 4.0e-16 89.7 160 35.0
FAN21G3878 Fragaria x ananassa HOM05D016692 ORTHO05D010482 1.5e-15 87.8 204 27.9
Atru.chr10.2344 Acer truncatum HOM05D008517 ORTHO05D010482 2.0e-15 87.4 186 30.1
RcHm_v2.0_Chr5g0073561 Rosa chinensis HOM05D016692 ORTHO05D010482 2.6e-15 87.0 222 27.9
Glyma.11G199600 Glycine max HOM05D008517 ORTHO05D010482 3.4e-15 86.7 244 28.3
Lj2A1104T76 Lonicera japonica HOM05D008517 ORTHO05D010482 1.3e-14 84.7 228 27.2
FvH4_3g40830 Fragaria vesca HOM05D016692 ORTHO05D010482 6.4e-14 82.4 204 27.0
VMungo0540G2173 Vigna mungo HOM05D008517 ORTHO05D010482 6.4e-14 82.4 229 29.3
FAN11G0742 Fragaria x ananassa HOM05D016692 ORTHO05D010482 2.5e-13 80.5 204 27.0
MD03G1049700 Malus domestica HOM05D016692 ORTHO05D010482 3.2e-13 80.1 198 26.8
MSTRG.12716 Avicennia marina HOM05D008517 ORTHO05D010482 5.5e-13 79.3 201 28.9
Sed0007690 Sechium edule HOM05D008517 ORTHO05D010482 6.0e-12 75.9 193 31.1
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 8.7e-11 72.0 180 32.8
FAN25G0531 Fragaria x ananassa HOM05D000033 ORTHO05D000913 1.9e-10 70.9 303 22.1
HanXRQChr06g0182401 Helianthus annuus HOM05D008517 ORTHO05D010482 1.6e-09 67.8 192 24.0
CARHR000970 Cardamine hirsuta HOM05D005178 ORTHO05D006123 2.4e-08 63.9 209 28.2
Carub.0001s0080 Capsella rubella HOM05D005178 ORTHO05D006123 7.6e-07 58.9 212 26.9
Sp1g00860 Schrenkiella parvula HOM05D005178 ORTHO05D006123 2.2e-06 57.4 124 35.5
Ca_09491_v3 Cicer arietinum L. HOM05D005178 ORTHO05D006123 3.8e-06 56.6 157 24.2
BraA10t42331Z Brassica rapa HOM05D005178 ORTHO05D006123 4.9e-06 56.2 221 29.0
Nn5g26812 Nelumbo nucifera HOM05D008517 ORTHO05D010482 6.5e-06 55.8 168 30.4
PGR042G2135 Punica granatum HOM05D005178 ORTHO05D006123 6.5e-06 55.8 131 29.8
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 8.4e-06 55.5 166 28.9


User provided reference genes

Program Settings