Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10322 Brassica carinata HOM05D005957 ORTHO05D007318 7.2e-110 400.6 203 100.0
BraA05t20430Z Brassica rapa HOM05D005957 ORTHO05D007318 2.2e-98 362.5 201 92.5
Sp4g12950 Schrenkiella parvula HOM05D005957 ORTHO05D007318 1.6e-93 346.3 201 89.6
BcaC02g11133 Brassica carinata HOM05D005957 ORTHO05D007318 3.7e-90 335.1 202 87.6
A05p15090 Brassica napus HOM05D005957 ORTHO05D007318 3.7e-90 335.1 202 87.1
BolC4t23551H Brassica oleracea HOM05D005957 ORTHO05D007318 8.3e-90 334.0 202 87.1
C04p20120 Brassica napus HOM05D005957 ORTHO05D007318 1.6e-88 329.7 201 86.6
CARHR123750 Cardamine hirsuta HOM05D005957 ORTHO05D007318 6.1e-85 317.8 207 82.6
AL4G25260 Arabidopsis lyrata HOM05D005957 ORTHO05D007318 2.3e-84 315.8 201 82.6
Thhalv10017867m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 6.8e-84 314.3 202 82.7
A04p23170 Brassica napus HOM05D005957 ORTHO05D007318 1.3e-82 310.1 201 83.1
BraA04t17844Z Brassica rapa HOM05D005957 ORTHO05D007318 4.9e-82 308.1 204 81.9
Thhalv10017852m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 4.9e-82 308.1 202 82.2
BolC4t27440H Brassica oleracea HOM05D005957 ORTHO05D007318 1.1e-81 307.0 204 81.4
BcaB06g28364 Brassica carinata HOM05D005957 ORTHO05D007318 1.4e-81 306.6 201 80.1
BcaC02g08022 Brassica carinata HOM05D005957 ORTHO05D007318 1.4e-81 306.6 201 82.1
C04p59320 Brassica napus HOM05D005957 ORTHO05D007318 1.4e-81 306.6 201 82.1
AT2G30395 Arabidopsis thaliana HOM05D005957 ORTHO05D007318 7.0e-81 304.3 201 80.1
Carub.0004s1155 Capsella rubella HOM05D005957 ORTHO05D007318 1.7e-79 299.7 203 79.8
Aa31LG5G6330 Aethionema arabicum HOM05D005957 ORTHO05D007318 3.6e-69 265.4 210 69.5
CARHR123780 Cardamine hirsuta HOM05D005957 ORTHO05D007318 2.4e-60 236.1 170 78.2
THA.LOC104800785 Tarenaya hassleriana HOM05D005957 ORTHO05D007318 3.3e-46 189.1 202 55.4
Thhalv10009633m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 6.0e-40 168.3 201 50.7
Sp1g05630 Schrenkiella parvula HOM05D005957 ORTHO05D007318 8.7e-39 164.5 201 48.3
Carub.0001s0622 Capsella rubella HOM05D005957 ORTHO05D007318 9.6e-38 161.0 201 48.3
AL1G16950 Arabidopsis lyrata HOM05D005957 ORTHO05D007318 1.6e-37 160.2 200 48.0
AT1G06923 Arabidopsis thaliana HOM05D005957 ORTHO05D007318 1.6e-37 160.2 200 48.5
BraA09t42007Z Brassica rapa HOM05D005957 ORTHO05D007318 1.8e-36 156.8 200 47.5
A09p66670 Brassica napus HOM05D005957 ORTHO05D007318 4.0e-36 155.6 200 47.5
CARHR006600 Cardamine hirsuta HOM05D005957 ORTHO05D007318 1.1e-33 147.5 202 46.0
QL01p025125 Quercus lobata HOM05D005957 ORTHO05D007318 6.0e-32 141.7 201 46.3
Medtr5g075190 Medicago truncatula HOM05D005957 ORTHO05D007318 1.8e-31 140.2 201 44.8
Manes.18G139500 Manihot esculenta HOM05D005957 ORTHO05D007318 5.1e-31 138.7 203 43.8
BcaC07g42550 Brassica carinata HOM05D005957 ORTHO05D007318 1.5e-30 137.1 200 44.0
Sabra19G0126000 Salix brachista HOM05D005957 ORTHO05D007318 1.5e-30 137.1 202 46.5
C08p50900 Brassica napus HOM05D005957 ORTHO05D007318 2.5e-30 136.3 200 44.0
BolC8t52618H Brassica oleracea HOM05D005957 ORTHO05D007318 2.5e-30 136.3 200 44.0
MD11G1055300 Malus domestica HOM05D005957 ORTHO05D007318 3.3e-30 136.0 203 41.4
COL.COLO4_11196 Corchorus olitorius HOM05D005957 ORTHO05D007318 4.3e-30 135.6 203 46.8
Haze_24453 Corylus avellana HOM05D005957 ORTHO05D007318 5.7e-30 135.2 202 46.5
GSVIVG01024580001 Vitis vinifera HOM05D005957 ORTHO05D007318 7.4e-30 134.8 201 43.3
TPR.G25771 Trifolium pratense HOM05D005957 ORTHO05D007318 9.6e-30 134.4 201 45.8
Potri.019G128400 Populus trichocarpa HOM05D005957 ORTHO05D007318 1.3e-29 134.0 193 46.1
Cfa011817 Carpinus fangiana HOM05D005957 ORTHO05D007318 1.6e-29 133.7 201 43.8
Duzib168G0649 Durio zibethinus HOM05D005957 ORTHO05D007318 1.6e-29 133.7 196 48.0
Glyma.02G235500 Glycine max HOM05D005957 ORTHO05D007318 1.6e-29 133.7 192 45.8
CiPaw.13G065100 Carya illinoinensis HOM05D005957 ORTHO05D007318 2.8e-29 132.9 201 42.8
CiPaw.14G051700 Carya illinoinensis HOM05D005957 ORTHO05D007318 2.8e-29 132.9 202 42.6
Ciclev10003853m.g Citrus clementina HOM05D005957 ORTHO05D007318 2.8e-29 132.9 200 43.5
Prupe.6G042800 Prunus persica HOM05D005957 ORTHO05D007318 3.7e-29 132.5 201 43.3
VMungo0647G0754 Vigna mungo HOM05D005957 ORTHO05D007318 3.7e-29 132.5 192 45.8
Glyma.14G203500 Glycine max HOM05D005957 ORTHO05D007318 4.8e-29 132.1 193 45.1
MD03G1053700 Malus domestica HOM05D005957 ORTHO05D007318 4.8e-29 132.1 205 41.5
Nitab4.5_0000002g0080 Nicotiana tabacum HOM05D005957 ORTHO05D007318 4.8e-29 132.1 202 44.6
FAN21G1009 Fragaria x ananassa HOM05D005957 ORTHO05D007318 8.2e-29 131.3 201 43.3
FvH4_3g40300 Fragaria vesca HOM05D005957 ORTHO05D007318 1.1e-28 131.0 201 43.3
Potri.013G155300 Populus trichocarpa HOM05D005957 ORTHO05D007318 1.8e-28 130.2 202 42.1
MELO3C026874.2 Cucumis melo HOM05D005957 ORTHO05D007318 3.1e-28 129.4 202 41.6
Atru.chr1.2524 Acer truncatum HOM05D005957 ORTHO05D007318 5.3e-28 128.6 195 37.9
Aqoxy2G00718 Aquilegia oxysepala HOM05D005957 ORTHO05D007318 5.3e-28 128.6 201 43.8
Gohir.A05G129400 Gossypium hirsutum HOM05D005957 ORTHO05D007318 6.9e-28 128.3 198 43.9
CANSAT54G0691 Cannabis sativa HOM05D005957 ORTHO05D007318 9.0e-28 127.9 204 44.6
CsaV3_6G019090 Cucumis sativus L. HOM05D005957 ORTHO05D007318 9.0e-28 127.9 203 41.9
RcHm_v2.0_Chr5g0072641 Rosa chinensis HOM05D005957 ORTHO05D007318 9.0e-28 127.9 201 42.3
Psat2g052120 Pisum sativum HOM05D005957 ORTHO05D007318 1.2e-27 127.5 201 42.8
Nitab4.5_0002091g0020 Nicotiana tabacum HOM05D005957 ORTHO05D007318 7.6e-27 124.8 195 43.1
Phvul.008G248400 Phaseolus vulgaris HOM05D005957 ORTHO05D007318 7.6e-27 124.8 192 44.8
Solyc06g082450.1 Solanum lycopersicum HOM05D005957 ORTHO05D007318 7.6e-27 124.8 190 44.2
Sed0019639 Sechium edule HOM05D005957 ORTHO05D007318 1.0e-26 124.4 201 39.8
Migut.D00827 Erythranthe guttata HOM05D005957 ORTHO05D007318 1.7e-26 123.6 199 41.2
LjContig00141g0008224 Lotus japonicus HOM05D005957 ORTHO05D007318 1.7e-26 123.6 201 43.8
Gorai.009G137600 Gossypium raimondii HOM05D005957 ORTHO05D007318 2.9e-26 122.9 198 42.9
Hma1.2p1_0119F.1_g056870 Hydrangea macrophylla HOM05D005957 ORTHO05D007318 2.9e-26 122.9 203 42.9
Nitab4.5_0007927g0010 Nicotiana tabacum HOM05D005957 ORTHO05D007318 2.9e-26 122.9 204 44.6
FAN11G2330 Fragaria x ananassa HOM05D005957 ORTHO05D007318 5.0e-26 122.1 192 43.2
FAN16G3236 Fragaria x ananassa HOM05D005957 ORTHO05D007318 5.0e-26 122.1 192 42.2
Solyc01g090870.1 Solanum lycopersicum HOM05D005957 ORTHO05D007318 6.5e-26 121.7 195 43.6
Sopen01g036610 Solanum pennellii HOM05D005957 ORTHO05D007318 8.4e-26 121.3 193 43.0
Peaxi162Scf00390g00049 Petunia axillaris HOM05D005957 ORTHO05D007318 1.1e-25 120.9 203 40.4
Peaxi162Scf01692g00003 Petunia axillaris HOM05D005957 ORTHO05D007318 1.4e-25 120.6 204 45.1
PGSC0003DMG400046061 Solanum tuberosum HOM05D005957 ORTHO05D007318 1.4e-25 120.6 193 41.5
Cc01_g15210 Coffea canephora HOM05D005957 ORTHO05D007318 3.2e-25 119.4 195 41.0
ClCG02G019100 Citrullus lanatus HOM05D005957 ORTHO05D007318 5.5e-25 118.6 201 40.3
Cpa.g.sc2.317 Carica papaya HOM05D005957 ORTHO05D007318 1.6e-24 117.1 101 55.4
MBI03_g02190_MAGBIO Magnolia biondii HOM05D005957 ORTHO05D007318 3.5e-24 115.9 198 40.9
FAN25G1085 Fragaria x ananassa HOM05D005957 ORTHO05D007318 1.3e-23 114.0 181 41.4
Nitab4.5_0002759g0020 Nicotiana tabacum HOM05D005957 ORTHO05D007318 1.3e-23 114.0 63 79.4
Oeu064677.1 Olea europaea HOM05D005957 ORTHO05D007318 1.8e-23 113.6 192 40.1
Sopen06g033830 Solanum pennellii HOM05D005957 ORTHO05D007318 3.0e-23 112.8 100 61.0
Ca_05700_v3 Cicer arietinum L. HOM05D005957 ORTHO05D007318 3.9e-23 112.5 131 48.9
Ca_30026_v3 Cicer arietinum L. HOM05D005957 ORTHO05D007318 3.9e-23 112.5 131 48.9
Thecc.09G362300 Theobroma cacao HOM05D005957 ORTHO05D007318 5.1e-23 112.1 106 57.5
Lalb_Chr17g0345591 Lupinus albus HOM05D005957 ORTHO05D007318 8.7e-23 111.3 205 41.5
Sabra13G0125100 Salix brachista HOM05D005957 ORTHO05D007318 8.7e-23 111.3 86 60.5
EL10Ac7g16454 Beta vulgaris HOM05D005957 ORTHO05D007318 1.1e-22 110.9 208 38.9
Migut.N00743 Erythranthe guttata HOM05D005957 ORTHO05D007318 1.9e-22 110.2 205 38.0
Eucgr.J01842 Eucalyptus grandis HOM05D005957 ORTHO05D007318 2.5e-22 109.8 102 54.9
Gohir.D05G134050 Gossypium hirsutum HOM05D005957 ORTHO05D007318 2.5e-22 109.8 89 62.9
MSTRG.17909 Avicennia marina HOM05D005957 ORTHO05D007318 3.3e-22 109.4 62 75.8
PGR119G2032 Punica granatum HOM05D005957 ORTHO05D007318 4.3e-22 109.0 214 38.3
Lsat_1_v5_gn_0_40840 Lactuca sativa HOM05D005957 ORTHO05D007318 9.7e-22 107.8 88 58.0
CAN.G1872.4 Capsicum annuum HOM05D005957 ORTHO05D007318 1.3e-21 107.5 110 50.9
TAR623G0423 Trochodendron aralioides HOM05D005957 ORTHO05D007318 1.3e-21 107.5 106 50.9
HanXRQChr01g0028631 Helianthus annuus HOM05D005957 ORTHO05D007318 1.6e-21 107.1 64 73.4
CSS0038993 Camellia sinensis var. sinensis HOM05D005957 ORTHO05D007318 3.7e-21 105.9 111 53.2
ECA236G1285 Erigeron canadensis HOM05D005957 ORTHO05D007318 3.7e-21 105.9 100 53.0
Nn5g26879 Nelumbo nucifera HOM05D005957 ORTHO05D007318 8.2e-21 104.8 89 56.2
Ah.08g217120 Amaranthus hybridus HOM05D005957 ORTHO05D007318 1.1e-20 104.4 207 39.1
Dinv04837 Davidia involucrata HOM05D005957 ORTHO05D007318 1.1e-20 104.4 94 56.4
TWI79G1455 Tripterygium wilfordii HOM05D005957 ORTHO05D007318 3.1e-20 102.8 89 58.4
Oeu011373.1 Olea europaea HOM05D005957 ORTHO05D007318 6.9e-20 101.7 60 75.0
Rhsim13G0060900 Rhododendron simsii HOM05D005957 ORTHO05D007318 6.9e-20 101.7 89 56.2
ATR0681G143 Amborella trichopoda HOM05D005957 ORTHO05D007318 9.0e-20 101.3 103 50.5
DCAR_023195 Daucus carota HOM05D005957 ORTHO05D007318 9.0e-20 101.3 73 63.0
vmacro02888 Vaccinium macrocarpon HOM05D005957 ORTHO05D007318 2.0e-19 100.1 87 58.6
SalBow6G3501 Salvia bowleyana HOM05D005957 ORTHO05D007318 3.4e-19 99.4 64 68.8
PSO170G5428 Papaver somniferum HOM05D005957 ORTHO05D007318 4.5e-19 99.0 117 47.0
SGA_v2.0_scaffold77G25368 Striga asiatica HOM05D005957 ORTHO05D007318 5.9e-19 98.6 195 40.0
PSO017G7297 Papaver somniferum HOM05D005957 ORTHO05D007318 7.7e-19 98.2 117 47.0
Os07g0679100 Oryza sativa ssp. japonica HOM05D005957 ORTHO05D007318 1.3e-18 97.4 101 48.5
Phvul.006G076900 Phaseolus vulgaris HOM05D005957 ORTHO05D007318 1.3e-18 97.4 125 45.6
Ah.15g095100 Amaranthus hybridus HOM05D005957 ORTHO05D007318 4.2e-17 92.4 224 33.5
BcaC07g42036 Brassica carinata HOM05D005957 ORTHO05D007318 7.2e-17 91.7 63 63.5
BcaC07g42037 Brassica carinata HOM05D005957 ORTHO05D007318 7.2e-17 91.7 63 63.5
Os05g0328300 Oryza sativa ssp. japonica HOM05D005957 ORTHO05D007318 1.6e-16 90.5 59 66.1
HanXRQChr17g0565391 Helianthus annuus HOM05D005957 ORTHO05D007318 4.6e-16 89.0 159 36.5
Sc21g0004870 Simmondsia chinensis HOM05D005957 ORTHO05D007318 7.9e-16 88.2 101 50.5
Zm00001eb350230 Zea mays HOM05D005957 ORTHO05D007318 1.4e-15 87.4 190 34.7
Zm00001eb330630 Zea mays HOM05D005957 ORTHO05D007318 3.3e-14 82.8 60 60.0
AUR62007156 Chenopodium quinoa HOM05D003140 ORTHO05D003851 4.3e-14 82.4 58 62.1
Dinv28722 Davidia involucrata HOM05D005957 ORTHO05D007318 4.3e-14 82.4 80 57.5
Dinv12270 Davidia involucrata HOM05D005957 ORTHO05D007318 2.4e-12 76.6 79 51.9
SEGI_34718 Sequoiadendron giganteum HOM05D005957 ORTHO05D007318 3.6e-08 62.8 75 37.3


User provided reference genes

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