Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 9.3e-207 723.4 387 100.0
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 1.6e-182 642.9 392 91.8
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 2.3e-181 639.0 393 91.6
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 4.3e-180 634.8 393 91.3
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 4.3e-180 634.8 393 91.1
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 9.7e-180 633.6 395 89.9
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 2.8e-179 632.1 405 89.6
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 6.3e-179 630.9 390 89.7
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 6.3e-179 630.9 390 89.7
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 1.1e-178 630.2 394 91.4
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 9.0e-178 627.1 390 89.2
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 2.0e-177 625.9 402 88.1
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 1.0e-176 623.6 400 87.5
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 2.9e-176 622.1 398 88.7
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 1.4e-175 619.8 394 87.3
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 6.1e-174 614.4 389 88.7
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 6.7e-173 610.9 399 88.0
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 5.7e-172 607.8 370 91.4
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 1.9e-167 592.8 378 88.4
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 2.8e-163 578.9 392 80.9
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 6.3e-163 577.8 392 80.1
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 9.1e-162 573.9 392 79.6
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 8.5e-160 567.4 367 86.4
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 1.1e-159 567.0 386 82.1
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 1.4e-159 566.6 403 78.7
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 4.2e-159 565.1 368 84.5
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 5.5e-159 564.7 374 82.4
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 9.4e-159 563.9 376 82.7
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.2e-158 563.5 369 83.2
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 2.7e-158 562.4 376 81.9
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 8.0e-158 560.8 375 82.7
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 1.0e-157 560.5 393 79.1
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 2.3e-157 559.3 370 83.2
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 3.9e-157 558.5 371 86.0
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 1.5e-156 556.6 369 82.7
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 2.6e-156 555.8 390 78.5
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 3.3e-156 555.4 368 82.1
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 7.4e-156 554.3 407 75.2
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 2.8e-155 552.4 386 78.2
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 2.8e-155 552.4 377 79.6
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 1.8e-154 549.7 364 82.7
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 3.1e-154 548.9 420 74.0
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 4.1e-154 548.5 360 81.9
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 7.0e-154 547.7 379 79.4
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 7.0e-154 547.7 380 77.9
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 9.1e-154 547.4 388 77.1
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 9.1e-154 547.4 369 81.3
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 1.6e-153 546.6 391 77.2
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 2.6e-153 545.8 388 77.8
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 2.6e-153 545.8 362 80.1
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 5.9e-153 544.7 391 76.2
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 7.7e-153 544.3 353 81.9
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 7.7e-153 544.3 361 80.9
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 7.7e-153 544.3 402 75.9
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 7.7e-153 544.3 404 76.0
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 1.0e-152 543.9 402 74.9
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 1.0e-152 543.9 362 79.6
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 1.0e-152 543.9 362 80.1
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 1.3e-152 543.5 392 77.8
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 2.2e-152 542.7 337 84.9
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 2.9e-152 542.3 399 75.9
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 5.0e-152 541.6 378 78.8
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 6.5e-152 541.2 371 77.9
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 8.5e-152 540.8 378 76.5
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 8.5e-152 540.8 345 88.4
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 8.5e-152 540.8 393 76.6
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 1.1e-151 540.4 389 76.9
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 1.9e-151 539.7 403 75.4
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.9e-151 539.7 385 77.4
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 1.9e-151 539.7 378 78.0
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 2.5e-151 539.3 383 77.5
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.5e-151 539.3 409 73.8
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.5e-151 539.3 409 73.8
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 3.2e-151 538.9 417 73.1
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 7.2e-151 537.7 333 83.2
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 9.4e-151 537.3 367 78.5
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 9.4e-151 537.3 383 77.5
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 2.1e-150 536.2 350 80.0
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 2.1e-150 536.2 350 80.0
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 4.7e-150 535.0 365 79.5
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 4.7e-150 535.0 385 75.1
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 4.7e-150 535.0 367 79.6
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 4.7e-150 535.0 388 75.3
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 6.1e-150 534.6 405 72.1
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 6.1e-150 534.6 405 72.1
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 1.0e-149 533.9 360 80.0
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 1.0e-149 533.9 371 77.1
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 1.0e-149 533.9 360 81.1
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 1.8e-149 533.1 374 77.8
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.3e-149 532.7 409 73.1
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 2.3e-149 532.7 369 77.2
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 5.2e-149 531.6 395 73.7
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 6.7e-149 531.2 384 76.6
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 1.5e-148 530.0 350 81.4
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 2.0e-148 529.6 350 81.4
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 4.4e-148 528.5 388 75.3
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 5.7e-148 528.1 388 74.0
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 1.3e-147 526.9 331 81.0
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 2.2e-147 526.2 377 75.6
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 8.2e-147 524.2 335 80.9
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.1e-146 523.9 329 84.2
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 1.4e-146 523.5 387 73.4
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 1.8e-146 523.1 345 77.7
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 5.3e-146 521.5 340 86.8
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 7.0e-146 521.2 378 75.4
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 1.6e-145 520.0 345 77.1
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 1.3e-144 516.9 335 80.9
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 2.5e-143 512.7 369 77.5
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 1.6e-142 510.0 374 73.0
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 1.6e-142 510.0 348 77.9
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 5.2e-141 505.0 411 69.8
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 2.0e-140 503.1 307 84.4
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 4.4e-140 501.9 297 86.9
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 1.1e-138 497.3 297 85.2
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 7.0e-138 494.6 408 68.4
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 1.2e-137 493.8 336 76.8
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 2.0e-137 493.0 297 84.8
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 4.5e-137 491.9 335 77.6
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 8.0e-134 481.1 332 74.4
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 1.4e-133 480.3 340 76.5
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 5.4e-130 468.4 378 70.4
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 5.0e-128 461.8 377 68.2
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 1.1e-127 460.7 407 68.1
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 3.7e-123 445.7 419 61.3
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 5.2e-117 425.2 272 83.8
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 2.2e-115 419.9 246 89.4
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 2.7e-113 412.9 335 66.0
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.8e-109 400.2 374 65.5
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 3.4e-108 396.0 322 70.5
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 4.4e-108 395.6 295 69.2
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 1.1e-106 391.0 354 60.2
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 3.2e-98 362.8 366 55.7
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 1.4e-90 337.4 198 88.4
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 8.7e-88 328.2 198 89.9
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 8.7e-88 328.2 198 89.9
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 5.1e-72 275.8 166 83.7
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 1.8e-64 250.8 294 46.3
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 1.5e-63 247.7 371 47.2
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 3.8e-59 233.0 310 43.5
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 8.8e-56 221.9 328 42.7
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 1.8e-53 214.2 154 74.7
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 2.6e-52 210.3 131 83.2
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 7.9e-49 198.7 200 59.0
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 1.3e-46 191.4 226 58.0
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.8e-37 161.0 217 49.8
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.1e-37 160.2 149 60.4
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 5.7e-31 139.4 80 88.8
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 1.1e-29 135.2 126 62.7
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 1.6e-25 121.3 89 70.8
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 8.0e-17 92.4 75 66.7
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 1.3e-14 85.1 48 89.6
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 5.4e-13 79.7 62 69.4
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 5.9e-12 76.3 90 48.9
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 3.9e-11 73.6 42 81.0
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 2.1e-09 67.8 52 73.1
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 5.2e-08 63.2 43 72.1


User provided reference genes

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