Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10091 Brassica carinata HOM05D006639 ORTHO05D008339 2.7e-62 242.7 180 100.0
A07p18230 Brassica napus HOM05D006639 ORTHO05D008339 2.8e-59 232.6 151 91.4
BraA07t29539Z Brassica rapa HOM05D006639 ORTHO05D008339 2.4e-58 229.6 151 91.4
BcaC02g10878 Brassica carinata HOM05D006639 ORTHO05D008339 1.4e-55 220.3 151 94.7
C04p24130 Brassica napus HOM05D006639 ORTHO05D008339 1.4e-55 220.3 151 94.7
BolC4t23910H Brassica oleracea HOM05D006639 ORTHO05D008339 1.4e-55 220.3 151 94.7
Sp4g10260 Schrenkiella parvula HOM05D006639 ORTHO05D008339 2.1e-51 206.5 158 79.7
BolC3t15529H Brassica oleracea HOM05D006639 ORTHO05D008339 6.9e-50 201.4 150 82.0
C03p31860 Brassica napus HOM05D006639 ORTHO05D008339 4.9e-48 195.3 150 75.3
BcaC01g04942 Brassica carinata HOM05D006639 ORTHO05D008339 1.4e-47 193.7 150 79.3
AT2G27470 Arabidopsis thaliana HOM05D006639 ORTHO05D008339 4.2e-47 192.2 162 81.5
AL4G21460 Arabidopsis lyrata HOM05D006639 ORTHO05D008339 2.1e-46 189.9 105 90.5
CARHR120120 Cardamine hirsuta HOM05D006639 ORTHO05D008339 2.7e-46 189.5 154 76.0
Aa31LG5G8810 Aethionema arabicum HOM05D006639 ORTHO05D008339 6.0e-46 188.3 146 69.9
Carub.0004s0810 Capsella rubella HOM05D006639 ORTHO05D008339 1.3e-45 187.2 105 89.5
BcaB01g03073 Brassica carinata HOM05D006639 ORTHO05D008339 5.9e-41 171.8 165 60.6
Thhalv10017865m.g Eutrema salsugineum HOM05D006639 ORTHO05D008339 5.9e-41 171.8 96 89.6
THA.LOC104826426 Tarenaya hassleriana HOM05D006639 ORTHO05D008339 1.0e-40 171.0 105 79.0
Duzib168G1184 Durio zibethinus HOM05D006639 ORTHO05D008339 3.2e-39 166.0 105 76.2
Thecc.09G282700 Theobroma cacao HOM05D006639 ORTHO05D008339 1.6e-38 163.7 104 76.9
Gohir.A05G080500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 6.1e-38 161.8 105 75.2
Gorai.009G085200 Gossypium raimondii HOM05D006639 ORTHO05D008339 6.1e-38 161.8 105 75.2
Gohir.D05G083500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 3.0e-37 159.5 100 78.0
Lj3g0014332 Lotus japonicus HOM05D006639 ORTHO05D008339 9.7e-36 154.5 97 77.3
Manes.11G162100 Manihot esculenta HOM05D006639 ORTHO05D008339 2.2e-35 153.3 110 71.8
Ca_19409_v3 Cicer arietinum L. HOM05D006639 ORTHO05D008339 2.8e-35 152.9 97 76.3
Potri.009G163500 Populus trichocarpa HOM05D006639 ORTHO05D008339 2.8e-35 152.9 108 73.1
arahy.Tifrunner.gnm1.ann1.I7PXCJ Arachis hypogaea HOM05D006639 ORTHO05D008339 6.3e-35 151.8 97 74.2
TPR.G17231 Trifolium pratense HOM05D006639 ORTHO05D008339 8.2e-35 151.4 97 75.3
arahy.Tifrunner.gnm1.ann1.UG6V14 Arachis hypogaea HOM05D006639 ORTHO05D008339 1.1e-34 151.0 97 73.2
Ciclev10029525m.g Citrus clementina HOM05D006639 ORTHO05D008339 1.4e-34 150.6 107 68.2
PGR119G2179 Punica granatum HOM05D006639 ORTHO05D008339 1.4e-34 150.6 97 75.3
Psat7g187880 Pisum sativum HOM05D006639 ORTHO05D008339 1.8e-34 150.2 97 75.3
MELO3C014503.2 Cucumis melo HOM05D006639 ORTHO05D008339 2.4e-34 149.8 98 73.5
Eucgr.J00499 Eucalyptus grandis HOM05D006639 ORTHO05D008339 2.4e-34 149.8 97 75.3
CsaV3_6G038390 Cucumis sativus L. HOM05D006639 ORTHO05D008339 3.1e-34 149.4 97 74.2
Glyma.11G183100 Glycine max HOM05D006639 ORTHO05D008339 5.3e-34 148.7 100 74.0
TWI31G0153 Tripterygium wilfordii HOM05D006639 ORTHO05D008339 5.3e-34 148.7 104 73.1
Sabra09G0127600 Salix brachista HOM05D006639 ORTHO05D008339 6.9e-34 148.3 98 76.5
Medtr4g052950 Medicago truncatula HOM05D006639 ORTHO05D008339 9.1e-34 147.9 97 74.2
PSO339G4282 Papaver somniferum HOM05D006639 ORTHO05D008339 9.1e-34 147.9 98 75.5
Lalb_Chr19g0136451 Lupinus albus HOM05D006639 ORTHO05D008339 2.0e-33 146.7 104 73.1
TAR636G3315 Trochodendron aralioides HOM05D006639 ORTHO05D008339 2.6e-33 146.4 97 73.2
CANSAT56G0593 Cannabis sativa HOM05D006639 ORTHO05D008339 3.4e-33 146.0 105 68.6
CANSAT56G1587 Cannabis sativa HOM05D006639 ORTHO05D008339 3.4e-33 146.0 105 68.6
Oeu022427.1 Olea europaea HOM05D006639 ORTHO05D008339 5.9e-33 145.2 97 73.2
CSS0034800 Camellia sinensis var. sinensis HOM05D006639 ORTHO05D008339 7.7e-33 144.8 97 74.2
Rhsim13G0112100 Rhododendron simsii HOM05D006639 ORTHO05D008339 1.0e-32 144.4 98 75.5
FvH4_3g24950 Fragaria vesca HOM05D006639 ORTHO05D008339 1.3e-32 144.1 105 72.4
Nn6g34885 Nelumbo nucifera HOM05D006639 ORTHO05D008339 1.3e-32 144.1 105 68.6
PSO384G2857 Papaver somniferum HOM05D006639 ORTHO05D008339 1.3e-32 144.1 98 73.5
RcHm_v2.0_Chr5g0044741 Rosa chinensis HOM05D006639 ORTHO05D008339 1.7e-32 143.7 97 76.3
GSVIVG01036120001 Vitis vinifera HOM05D006639 ORTHO05D008339 1.7e-32 143.7 98 71.4
FAN21G1301 Fragaria x ananassa HOM05D006639 ORTHO05D008339 2.2e-32 143.3 97 74.2
FAN16G2085 Fragaria x ananassa HOM05D006639 ORTHO05D008339 2.9e-32 142.9 105 71.4
Phvul.011G094600 Phaseolus vulgaris HOM05D006639 ORTHO05D008339 3.8e-32 142.5 97 71.1
VMungo1127G0544 Vigna mungo HOM05D006639 ORTHO05D008339 3.8e-32 142.5 97 72.2
MBI17_g08336_MAGBIO Magnolia biondii HOM05D006639 ORTHO05D008339 6.5e-32 141.7 98 71.4
Hund18759 Selenicereus undatus HOM05D006639 ORTHO05D008339 6.5e-32 141.7 98 75.5
Sc12g0004540 Simmondsia chinensis HOM05D006639 ORTHO05D008339 6.5e-32 141.7 97 73.2
FAN25G3607 Fragaria x ananassa HOM05D006639 ORTHO05D008339 8.5e-32 141.4 105 69.5
Cfa010012 Carpinus fangiana HOM05D006639 ORTHO05D008339 1.9e-31 140.2 97 72.2
Haze_23370 Corylus avellana HOM05D006639 ORTHO05D008339 1.9e-31 140.2 88 77.3
ClCG02G022260 Citrullus lanatus HOM05D006639 ORTHO05D008339 3.2e-31 139.4 102 67.6
HPP92_003216 Vanilla planifolia HOM05D006639 ORTHO05D008339 3.2e-31 139.4 111 64.0
Sed0014981 Sechium edule HOM05D006639 ORTHO05D008339 5.5e-31 138.7 92 71.7
vmacro03320 Vaccinium macrocarpon HOM05D006639 ORTHO05D008339 5.5e-31 138.7 105 71.4
CiPaw.14G099800 Carya illinoinensis HOM05D006639 ORTHO05D008339 9.4e-31 137.9 97 71.1
Ah.15g095860 Amaranthus hybridus HOM05D006639 ORTHO05D008339 1.2e-30 137.5 98 72.4
Aqoxy4G02766 Aquilegia oxysepala HOM05D006639 ORTHO05D008339 1.6e-30 137.1 101 66.3
HanXRQChr14g0438101 Helianthus annuus HOM05D006639 ORTHO05D008339 1.6e-30 137.1 96 72.9
Prupe.6G130500 Prunus persica HOM05D006639 ORTHO05D008339 2.1e-30 136.7 98 73.5
Nitab4.5_0000755g0110 Nicotiana tabacum HOM05D006639 ORTHO05D008339 4.6e-30 135.6 93 71.0
Nitab4.5_0010969g0010 Nicotiana tabacum HOM05D006639 ORTHO05D008339 4.6e-30 135.6 93 71.0
CAN.G1524.3 Capsicum annuum HOM05D006639 ORTHO05D008339 6.1e-30 135.2 91 73.6
PGSC0003DMG400026357 Solanum tuberosum HOM05D006639 ORTHO05D008339 6.1e-30 135.2 93 71.0
CDE08G1389 Ceratophyllum demersum HOM05D006639 ORTHO05D008339 7.9e-30 134.8 98 65.3
Glyma.12G089400 Glycine max HOM05D006639 ORTHO05D008339 7.9e-30 134.8 100 68.0
Solyc11g068480.2 Solanum lycopersicum HOM05D006639 ORTHO05D008339 7.9e-30 134.8 93 71.0
Sopen11g027190 Solanum pennellii HOM05D006639 ORTHO05D008339 7.9e-30 134.8 93 71.0
Migut.D02442 Erythranthe guttata HOM05D006639 ORTHO05D008339 1.8e-29 133.7 100 65.0
QL01p012190 Quercus lobata HOM05D006639 ORTHO05D008339 1.8e-29 133.7 109 66.1
EL10Ac7g15828 Beta vulgaris HOM05D006639 ORTHO05D008339 3.0e-29 132.9 98 69.4
Cc01_g09080 Coffea canephora HOM05D006639 ORTHO05D008339 3.9e-29 132.5 104 60.6
ATR0776G083 Amborella trichopoda HOM05D006639 ORTHO05D008339 5.1e-29 132.1 103 68.0
MSTRG.18760 Avicennia marina HOM05D006639 ORTHO05D008339 5.1e-29 132.1 100 63.0
DCAR_010346 Daucus carota HOM05D006639 ORTHO05D008339 5.1e-29 132.1 104 65.4
Peaxi162Scf00040g00018 Petunia axillaris HOM05D006639 ORTHO05D008339 6.7e-29 131.7 105 66.7
Oeu031474.1 Olea europaea HOM05D006639 ORTHO05D008339 8.8e-29 131.3 98 65.3
Lsat_1_v5_gn_2_59441 Lactuca sativa HOM05D006639 ORTHO05D008339 2.0e-28 130.2 103 67.0
Zm00001eb308280 Zea mays HOM05D006639 ORTHO05D008339 3.3e-28 129.4 100 65.0
SGA_v2.0_scaffold22G09859 Striga asiatica HOM05D006639 ORTHO05D008339 5.7e-28 128.6 97 63.9
unitig_37.g12892 Utricularia gibba HOM05D006639 ORTHO05D008339 1.7e-27 127.1 104 58.7
ECA238G3612 Erigeron canadensis HOM05D006639 ORTHO05D008339 2.8e-27 126.3 102 66.7
FAN11G3713 Fragaria x ananassa HOM05D006639 ORTHO05D008339 8.2e-27 124.8 95 70.5
MD11G1164600 Malus domestica HOM05D006639 ORTHO05D008339 1.1e-26 124.4 106 60.4
Atru.BG.107.p Acer truncatum HOM05D006639 ORTHO05D008339 1.8e-26 123.6 86 66.3
Os09g0568200 Oryza sativa ssp. japonica HOM05D006639 ORTHO05D008339 3.1e-26 122.9 99 60.6
SEGI_32267 Sequoiadendron giganteum HOM05D006639 ORTHO05D008339 4.1e-26 122.5 102 62.7
Atru.chr3.3238 Acer truncatum HOM05D006639 ORTHO05D008339 5.3e-26 122.1 88 65.9
Lj2A946T24 Lonicera japonica HOM05D006639 ORTHO05D008339 9.1e-26 121.3 100 65.0
Lj2A964T5 Lonicera japonica HOM05D006639 ORTHO05D008339 2.6e-25 119.8 100 64.0
DCAR_006164 Daucus carota HOM05D006639 ORTHO05D008339 3.8e-24 115.9 88 64.8
Mapoly0105s0006 Marchantia polymorpha HOM05D006639 ORTHO05D008339 3.8e-24 115.9 105 55.2
SMO340G0007 Selaginella moellendorffii HOM05D006639 ORTHO05D008339 7.2e-23 111.7 96 56.2
AagrBONN_evm.TU.Sc2ySwM_362.1778 Anthoceros agrestis HOM05D006639 ORTHO05D008339 1.2e-22 110.9 105 52.4
Pp3c26_8280 Physcomitrium patens HOM05D006639 ORTHO05D008339 7.9e-22 108.2 102 54.9
MCO15G204 Micromonas commoda HOM05D006639 ORTHO05D008339 2.0e-20 103.6 107 53.3
PRCOL_00006285 Prasinoderma coloniale HOM05D006639 ORTHO05D008339 1.6e-17 94.0 97 48.5
ECA238G0189 Erigeron canadensis HOM05D006639 ORTHO05D008339 5.0e-16 89.0 74 62.2
Cre07.g341800 Chlamydomonas reinhardtii HOM05D006639 ORTHO05D008339 7.2e-15 85.1 100 45.0
Nn1g05220 Nelumbo nucifera HOM05D006639 ORTHO05D008339 3.5e-09 66.2 51 62.7
Nn1g05039 Nelumbo nucifera HOM05D006639 ORTHO05D008339 1.3e-08 64.3 57 57.9
Nn053s41924 Nelumbo nucifera HOM05D006639 ORTHO05D008339 2.2e-08 63.5 82 50.0
Nn1g05216 Nelumbo nucifera HOM05D006639 ORTHO05D008339 2.2e-08 63.5 82 50.0
Nn1g05215 Nelumbo nucifera HOM05D006639 ORTHO05D008339 5.0e-08 62.4 48 64.6
COL.COLO4_19857 Corchorus olitorius HOM05D006639 ORTHO05D008339 2.5e-07 60.1 36 77.8
Lalb_Chr03g0028111 Lupinus albus HOM05D006639 ORTHO05D008339 7.2e-07 58.5 39 74.4
AUR62009752 Chenopodium quinoa HOM05D006639 ORTHO05D008339 1.6e-06 57.4 48 56.2


User provided reference genes

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