Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 5.0e-85 317.8 164 100.0
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 2.7e-83 312.0 164 98.2
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 6.1e-83 310.8 164 98.2
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 6.1e-83 310.8 164 98.2
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 1.5e-81 306.2 164 97.0
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 9.7e-81 303.5 164 96.3
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 8.0e-75 283.9 164 88.4
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 3.9e-74 281.6 164 86.0
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 4.7e-67 258.1 164 80.5
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 6.1e-67 257.7 164 81.1
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 4.4e-65 251.5 164 77.4
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 4.8e-64 248.1 165 77.6
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 4.9e-40 168.3 162 62.3
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 8.3e-32 141.0 177 46.9
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 8.3e-32 141.0 177 46.3
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 8.3e-32 141.0 177 46.3
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 2.4e-31 139.4 178 48.9
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 5.4e-31 138.3 148 52.7
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 7.0e-31 137.9 168 50.6
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 2.1e-30 136.3 152 51.3
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 3.5e-30 135.6 168 49.4
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 7.8e-30 134.4 179 46.9
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 7.8e-30 134.4 166 48.2
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 1.3e-29 133.7 179 44.1
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 3.0e-29 132.5 178 44.9
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 3.9e-29 132.1 179 45.8
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 5.0e-29 131.7 176 45.5
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 6.6e-29 131.3 174 44.8
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 1.1e-28 130.6 168 48.2
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 1.1e-28 130.6 168 46.4
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 1.9e-28 129.8 165 45.5
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 2.5e-28 129.4 169 47.3
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 2.5e-28 129.4 184 44.6
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 4.3e-28 128.6 175 45.7
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 5.6e-28 128.3 178 43.8
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 5.6e-28 128.3 171 46.2
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 5.6e-28 128.3 149 47.0
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 9.5e-28 127.5 169 46.7
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 1.2e-27 127.1 179 43.6
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 1.2e-27 127.1 166 46.4
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 1.2e-27 127.1 154 49.4
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 1.6e-27 126.7 166 45.8
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 2.8e-27 125.9 165 45.5
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 2.8e-27 125.9 154 46.1
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 3.6e-27 125.6 178 43.8
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 3.6e-27 125.6 168 44.0
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 4.7e-27 125.2 169 47.3
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 6.2e-27 124.8 174 44.3
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 8.1e-27 124.4 155 43.9
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 8.1e-27 124.4 174 45.4
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 1.1e-26 124.0 165 44.8
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 1.1e-26 124.0 165 43.6
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.1e-26 124.0 165 43.6
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 1.1e-26 124.0 150 48.7
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 1.1e-26 124.0 146 47.3
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 1.4e-26 123.6 179 43.0
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 1.8e-26 123.2 156 45.5
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 2.3e-26 122.9 165 43.6
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 2.3e-26 122.9 175 42.9
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 3.1e-26 122.5 182 42.9
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 3.1e-26 122.5 165 43.6
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 3.1e-26 122.5 178 44.9
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 3.1e-26 122.5 172 47.1
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 3.1e-26 122.5 172 45.3
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 4.0e-26 122.1 164 48.2
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 4.0e-26 122.1 192 41.7
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 6.8e-26 121.3 163 45.4
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 8.9e-26 120.9 177 44.1
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.2e-25 120.6 179 43.0
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 1.2e-25 120.6 178 43.8
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 1.2e-25 120.6 180 43.9
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 1.5e-25 120.2 164 47.6
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 1.5e-25 120.2 146 45.9
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 2.0e-25 119.8 174 46.0
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 2.6e-25 119.4 175 43.4
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 3.4e-25 119.0 158 47.5
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 7.5e-25 117.9 169 44.4
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 9.9e-25 117.5 175 43.4
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 1.3e-24 117.1 154 44.8
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 1.3e-24 117.1 177 40.1
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 1.3e-24 117.1 177 40.1
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 1.3e-24 117.1 183 42.6
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 1.3e-24 117.1 169 41.4
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 1.3e-24 117.1 175 42.3
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 1.7e-24 116.7 172 43.6
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 2.2e-24 116.3 180 45.6
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 2.9e-24 115.9 169 42.0
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 6.4e-24 114.8 163 42.9
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 8.3e-24 114.4 176 39.8
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 1.4e-23 113.6 179 41.3
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 1.4e-23 113.6 169 44.4
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 2.4e-23 112.8 170 40.6
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 3.2e-23 112.5 177 42.9
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 3.2e-23 112.5 176 39.2
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 3.2e-23 112.5 171 41.5
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 4.1e-23 112.1 175 43.4
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 4.1e-23 112.1 163 39.9
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 5.4e-23 111.7 174 39.1
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 7.1e-23 111.3 180 36.7
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 9.2e-23 110.9 177 38.4
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.2e-22 110.5 176 39.2
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 2.7e-22 109.4 168 41.7
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 2.7e-22 109.4 179 39.1
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 2.7e-22 109.4 176 39.8
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 3.5e-22 109.0 191 39.3
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 7.8e-22 107.8 177 39.0
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 1.0e-21 107.5 179 36.9
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 1.0e-21 107.5 163 38.0
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 1.7e-21 106.7 174 44.3
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 3.0e-21 105.9 182 41.8
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 1.9e-20 103.2 174 40.2
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 7.3e-20 101.3 174 38.5
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 9.5e-20 100.9 174 40.8
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 1.6e-19 100.1 182 36.3
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 1.6e-19 100.1 174 41.4
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 2.8e-19 99.4 174 39.7
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 2.8e-19 99.4 161 40.4
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 3.1e-18 95.9 123 48.0
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 4.0e-18 95.5 171 39.8
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 5.2e-18 95.1 174 37.9
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 8.9e-18 94.4 174 40.2
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 8.9e-18 94.4 174 38.5
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 8.9e-18 94.4 174 38.5
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 2.6e-17 92.8 167 37.7
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 2.6e-17 92.8 128 42.2
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 3.4e-17 92.4 174 39.1
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 3.4e-17 92.4 115 48.7
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 5.8e-17 91.7 170 38.8
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 5.8e-17 91.7 174 37.9
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 9.9e-17 90.9 118 45.8
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 4.3e-12 75.5 119 42.0
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 9.6e-12 74.3 143 35.7
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 1.6e-11 73.6 150 36.7
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 2.8e-11 72.8 174 35.1
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 4.4e-09 65.5 203 29.6
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 1.4e-07 60.5 115 33.0
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 7.1e-07 58.2 174 31.6
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 1.6e-06 57.0 169 30.8


User provided reference genes

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