Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10055 Brassica carinata HOM05D001527 ORTHO05D092273 2.2e-64 248.8 130 100.0
BcaNung05238 Brassica carinata HOM05D001527 ORTHO05D001492 4.5e-57 224.6 129 92.2
BcaC09g50666 Brassica carinata HOM05D001527 ORTHO05D001492 2.8e-54 215.3 129 88.4
C01p21910 Brassica napus HOM05D001527 ORTHO05D001492 8.0e-54 213.8 129 87.6
BolC1t02118H Brassica oleracea HOM05D001527 ORTHO05D001492 8.0e-54 213.8 129 87.6
A01p17400 Brassica napus HOM05D001527 ORTHO05D001492 1.8e-53 212.6 129 86.8
BraA01t01694Z Brassica rapa HOM05D001527 ORTHO05D001492 1.2e-52 209.9 129 86.0
Sp7g24140 Schrenkiella parvula HOM05D001527 ORTHO05D001492 4.7e-46 188.0 130 80.8
Thhalv10024746m.g Eutrema salsugineum HOM05D001527 ORTHO05D001492 1.9e-39 166.0 132 73.5
Carub.0007s1483 Capsella rubella HOM05D001527 ORTHO05D001492 4.3e-39 164.9 134 71.6
AT4G26120 Arabidopsis thaliana HOM05D001527 ORTHO05D001492 5.6e-39 164.5 130 73.1
CARHR233640 Cardamine hirsuta HOM05D001527 ORTHO05D001492 2.8e-38 162.2 130 72.3
AL7G26860 Arabidopsis lyrata HOM05D001527 ORTHO05D001492 2.2e-35 152.5 131 71.0
Carub.0002s0054 Capsella rubella HOM05D001527 ORTHO05D001492 1.9e-34 149.4 128 67.2
Aa31LG3G470 Aethionema arabicum HOM05D001527 ORTHO05D001492 2.7e-33 145.6 135 60.7
AL2G10690 Arabidopsis lyrata HOM05D001527 ORTHO05D001492 3.5e-33 145.2 139 62.6
AT1G64280 Arabidopsis thaliana HOM05D001527 ORTHO05D001492 5.1e-32 141.4 134 63.4
BraA01t01692Z Brassica rapa HOM05D001527 ORTHO05D001492 3.3e-31 138.7 135 62.2
Thhalv10024745m.g Eutrema salsugineum HOM05D001527 ORTHO05D001492 5.6e-31 137.9 139 63.3
Thhalv10023365m.g Eutrema salsugineum HOM05D001527 ORTHO05D001492 7.3e-31 137.5 140 61.4
A01p17380 Brassica napus HOM05D001527 ORTHO05D001492 1.2e-30 136.7 135 61.5
BcaC09g50668 Brassica carinata HOM05D001527 ORTHO05D001492 2.1e-30 136.0 135 60.7
BcaNung05236 Brassica carinata HOM05D001527 ORTHO05D001492 3.6e-30 135.2 135 59.3
C01p21860 Brassica napus HOM05D001527 ORTHO05D001492 6.2e-30 134.4 135 60.0
BolC1t02112H Brassica oleracea HOM05D001527 ORTHO05D001492 6.2e-30 134.4 135 60.0
BcaC07g38224 Brassica carinata HOM05D001527 ORTHO05D001492 5.2e-29 131.3 139 57.6
C08p09790 Brassica napus HOM05D001527 ORTHO05D001492 5.2e-29 131.3 139 58.3
BolC8t48653H Brassica oleracea HOM05D001527 ORTHO05D001492 5.2e-29 131.3 139 57.6
Sp2g00470 Schrenkiella parvula HOM05D001527 ORTHO05D001492 2.0e-28 129.4 112 64.3
CARHR046670 Cardamine hirsuta HOM05D001527 ORTHO05D001492 4.4e-28 128.3 125 60.0
BcaB07g31515 Brassica carinata HOM05D001527 ORTHO05D001492 3.7e-27 125.2 129 58.1
THA.LOC104817761 Tarenaya hassleriana HOM05D001527 ORTHO05D001492 1.1e-26 123.6 127 60.6
C09p17140 Brassica napus HOM05D001527 ORTHO05D001492 9.2e-26 120.6 129 56.6
BolC9t54613H Brassica oleracea HOM05D001527 ORTHO05D001492 9.2e-26 120.6 129 56.6
BcaB03g12494 Brassica carinata HOM05D001527 ORTHO05D001492 1.6e-25 119.8 141 56.7
A09p14230 Brassica napus HOM05D001527 ORTHO05D001492 3.5e-25 118.6 129 55.8
BcaC04g22635 Brassica carinata HOM05D001527 ORTHO05D001492 7.8e-25 117.5 129 55.0
BraA09t37072Z Brassica rapa HOM05D001527 ORTHO05D001492 1.3e-24 116.7 129 55.0
A08p20860 Brassica napus HOM05D001527 ORTHO05D001492 3.0e-24 115.5 131 55.0
BraA08t34040Z Brassica rapa HOM05D001527 ORTHO05D001492 3.3e-23 112.1 131 54.2
COL.COLO4_18182 Corchorus olitorius HOM05D001527 ORTHO05D001492 3.4e-20 102.1 128 47.7
Gohir.A08G245500 Gossypium hirsutum HOM05D001527 ORTHO05D001492 4.6e-17 91.7 103 49.5
Gorai.004G284300 Gossypium raimondii HOM05D001527 ORTHO05D001492 4.6e-17 91.7 103 49.5
Lsat_1_v5_gn_5_142961 Lactuca sativa HOM05D001527 ORTHO05D001492 4.6e-17 91.7 129 41.1
Manes.16G100600 Manihot esculenta HOM05D001527 ORTHO05D001492 6.0e-17 91.3 124 45.2
Potri.006G148100 Populus trichocarpa HOM05D001527 ORTHO05D001492 6.0e-17 91.3 125 45.6
Thecc.09G086200 Theobroma cacao HOM05D001527 ORTHO05D001492 7.8e-17 90.9 128 44.5
CiPaw.03G213100 Carya illinoinensis HOM05D001527 ORTHO05D001492 1.7e-16 89.7 129 44.2
Duzib168G2042 Durio zibethinus HOM05D001527 ORTHO05D001492 1.7e-16 89.7 128 44.5
Gohir.D08G266500 Gossypium hirsutum HOM05D001527 ORTHO05D001492 1.7e-16 89.7 103 48.5
Sabra06G0117200 Salix brachista HOM05D001527 ORTHO05D001492 3.9e-16 88.6 125 44.0
Hund25990 Selenicereus undatus HOM05D001527 ORTHO05D001492 6.6e-16 87.8 93 47.3
Dinv36781 Davidia involucrata HOM05D001527 ORTHO05D001492 1.5e-15 86.7 131 40.5
TAR624G0175 Trochodendron aralioides HOM05D001527 ORTHO05D001492 1.5e-15 86.7 123 42.3
Cpa.g.sc61.4 Carica papaya HOM05D001527 ORTHO05D001492 2.5e-15 85.9 100 49.0
Atru.chr7.1620 Acer truncatum HOM05D001527 ORTHO05D001492 4.3e-15 85.1 125 41.6
Ciclev10007832m.g Citrus clementina HOM05D001527 ORTHO05D001492 4.3e-15 85.1 126 40.5
GSVIVG01015181001 Vitis vinifera HOM05D001527 ORTHO05D001492 5.6e-15 84.7 126 38.9
TWI34G0625 Tripterygium wilfordii HOM05D001527 ORTHO05D001492 1.3e-14 83.6 122 43.4
Nn6g35513 Nelumbo nucifera HOM05D001527 ORTHO05D001492 1.6e-14 83.2 117 40.2
Hma1.2p1_0169F.1_g074920 Hydrangea macrophylla HOM05D001527 ORTHO05D001492 2.1e-14 82.8 97 46.4
Actinidia29909 Actinidia chinensis HOM05D001527 ORTHO05D001492 2.8e-14 82.4 131 37.4
Lj7C678T7 Lonicera japonica HOM05D001527 ORTHO05D001492 3.6e-14 82.0 95 47.4
Cfa003065 Carpinus fangiana HOM05D001527 ORTHO05D001492 4.8e-14 81.6 128 40.6
Rhsim05G0017300 Rhododendron simsii HOM05D001527 ORTHO05D001492 6.2e-14 81.3 119 42.0
vmacro17136 Vaccinium macrocarpon HOM05D001527 ORTHO05D001492 8.1e-14 80.9 135 41.5
Aqoxy7G04025 Aquilegia oxysepala HOM05D001527 ORTHO05D001492 1.1e-13 80.5 125 38.4
Oeu034802.1 Olea europaea HOM05D001527 ORTHO05D001492 1.1e-13 80.5 139 43.2
Haze_25932 Corylus avellana HOM05D001527 ORTHO05D001492 1.4e-13 80.1 128 40.6
CiPaw.04G148200 Carya illinoinensis HOM05D001527 ORTHO05D001492 1.8e-13 79.7 129 41.1
Migut.L01508 Erythranthe guttata HOM05D001527 ORTHO05D001492 1.8e-13 79.7 114 43.9
Nn8g38810 Nelumbo nucifera HOM05D001527 ORTHO05D001492 3.1e-13 79.0 123 40.7
CSS0033230 Camellia sinensis var. sinensis HOM05D001527 ORTHO05D001492 5.3e-13 78.2 137 38.0
CSS0034352 Camellia sinensis var. sinensis HOM05D001527 ORTHO05D001492 5.3e-13 78.2 137 38.0
Sc08g0008570 Simmondsia chinensis HOM05D001527 ORTHO05D001492 5.3e-13 78.2 130 36.9
Solyc07g040690.3 Solanum lycopersicum HOM05D001527 ORTHO05D001492 6.9e-13 77.8 99 46.5
ECA234G2518 Erigeron canadensis HOM05D001527 ORTHO05D001492 1.2e-12 77.0 116 37.9
Prupe.7G206800 Prunus persica HOM05D001527 ORTHO05D001492 2.0e-12 76.3 95 44.2
Sopen07g019400 Solanum pennellii HOM05D001527 ORTHO05D001492 2.0e-12 76.3 96 46.9
Nitab4.5_0002593g0010 Nicotiana tabacum HOM05D001527 ORTHO05D001492 2.6e-12 75.9 97 47.4
CAN.G1386.2 Capsicum annuum HOM05D001527 ORTHO05D001492 3.4e-12 75.5 125 39.2
MSTRG.10550 Avicennia marina HOM05D001527 ORTHO05D001492 4.4e-12 75.1 131 38.9
MD02G1082100 Malus domestica HOM05D001527 ORTHO05D001492 5.8e-12 74.7 101 41.6
Nitab4.5_0001519g0060 Nicotiana tabacum HOM05D001527 ORTHO05D001492 7.6e-12 74.3 97 46.4
QL02p062253 Quercus lobata HOM05D001527 ORTHO05D001492 7.6e-12 74.3 135 37.8
EL10Ac8g19183 Beta vulgaris HOM05D001527 ORTHO05D001492 1.7e-11 73.2 103 44.7
HanXRQChr12g0354641 Helianthus annuus HOM05D001527 ORTHO05D001492 1.7e-11 73.2 121 42.1
PSO210G5435 Papaver somniferum HOM05D001527 ORTHO05D001492 2.2e-11 72.8 94 47.9
SalBow1G3839 Salvia bowleyana HOM05D001527 ORTHO05D001492 2.2e-11 72.8 128 40.6
Actinidia38454 Actinidia chinensis HOM05D001527 ORTHO05D001492 2.9e-11 72.4 124 34.7
Cc06_g11580 Coffea canephora HOM05D001527 ORTHO05D001492 3.8e-11 72.0 134 38.1
PSO210G3287 Papaver somniferum HOM05D001527 ORTHO05D001492 4.9e-11 71.6 117 42.7
TPR.G13414 Trifolium pratense HOM05D001527 ORTHO05D001492 4.9e-11 71.6 125 37.6
CDE04G0193 Ceratophyllum demersum HOM05D001527 ORTHO05D001492 6.4e-11 71.2 130 36.2
vmacro17259 Vaccinium macrocarpon HOM05D001527 ORTHO05D001492 1.1e-10 70.5 94 39.4
PSO210G6195 Papaver somniferum HOM05D001527 ORTHO05D001492 1.4e-10 70.1 94 46.8
Peaxi162Scf00221g00002 Petunia axillaris HOM05D001527 ORTHO05D001492 2.4e-10 69.3 97 45.4
SGA_v2.0_scaffold21G09398 Striga asiatica HOM05D001527 ORTHO05D001492 2.4e-10 69.3 130 36.9
DCAR_011963 Daucus carota HOM05D000090 ORTHO05D000083 4.2e-10 68.6 92 44.6
MBI01_g20342_MAGBIO Magnolia biondii HOM05D001527 ORTHO05D001492 4.2e-10 68.6 130 36.2
Aqoxy1G03906 Aquilegia oxysepala HOM05D001527 ORTHO05D001492 5.4e-10 68.2 103 39.8
FAN23G2936 Fragaria x ananassa HOM05D001527 ORTHO05D001492 5.4e-10 68.2 94 39.4
Medtr2g039880 Medicago truncatula HOM05D001527 ORTHO05D001492 5.4e-10 68.2 90 45.6
RcHm_v2.0_Chr2g0093681 Rosa chinensis HOM05D001527 ORTHO05D001492 5.4e-10 68.2 93 36.6
Ah.14g085120 Amaranthus hybridus HOM05D001527 ORTHO05D001492 7.1e-10 67.8 134 39.6
FvH4_1g07810 Fragaria vesca HOM05D001527 ORTHO05D001492 7.1e-10 67.8 94 38.3
FAN19G1874 Fragaria x ananassa HOM05D001527 ORTHO05D001492 7.1e-10 67.8 94 38.3
Atru.chr7.702 Acer truncatum HOM05D001527 ORTHO05D001492 9.3e-10 67.4 82 46.3
Ah.09g228120 Amaranthus hybridus HOM05D001527 ORTHO05D001492 9.3e-10 67.4 131 35.9
FAN28G1808 Fragaria x ananassa HOM05D001527 ORTHO05D001492 9.3e-10 67.4 94 39.4
FAN26G3219 Fragaria x ananassa HOM05D001527 ORTHO05D001492 1.2e-09 67.0 94 39.4
FAN26G2294 Fragaria x ananassa HOM05D001527 ORTHO05D001492 2.1e-09 66.2 94 39.4
Lj6g0023749 Lotus japonicus HOM05D001527 ORTHO05D001492 2.1e-09 66.2 124 33.9
MD15G1209700 Malus domestica HOM05D001527 ORTHO05D001492 3.5e-09 65.5 95 40.0
Rhsim05G0018000 Rhododendron simsii HOM05D001527 ORTHO05D001492 4.6e-09 65.1 93 41.9
Rhsim05G0018100 Rhododendron simsii HOM05D001527 ORTHO05D001492 7.8e-09 64.3 94 40.4
PGR142G2080 Punica granatum HOM05D001527 ORTHO05D001492 1.3e-08 63.5 131 36.6
vmacro17260 Vaccinium macrocarpon HOM05D001527 ORTHO05D001492 1.3e-08 63.5 94 38.3
unitig_746.g26796 Utricularia gibba HOM05D001527 ORTHO05D001492 3.0e-08 62.4 99 37.4
HPP92_003978 Vanilla planifolia HOM05D001527 ORTHO05D001492 3.9e-08 62.0 109 42.2
PSO210G4435 Papaver somniferum HOM05D001527 ORTHO05D001492 6.6e-08 61.2 95 46.3
ATR0789G112 Amborella trichopoda HOM05D001527 ORTHO05D001492 1.5e-07 60.1 97 37.1
Eucgr.C00872 Eucalyptus grandis HOM05D001527 ORTHO05D001492 3.3e-07 58.9 97 34.0
PSO210G0566 Papaver somniferum HOM05D001527 ORTHO05D001492 3.3e-07 58.9 95 45.3
SEGI_01449 Sequoiadendron giganteum HOM05D001527 ORTHO05D001492 7.3e-07 57.8 94 34.0
Eucgr.C03423 Eucalyptus grandis HOM05D001527 ORTHO05D001492 1.3e-06 57.0 116 35.3
SEGI_17319 Sequoiadendron giganteum HOM05D001527 ORTHO05D001492 6.2e-06 54.7 123 28.5


User provided reference genes

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