Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 9.9e-61 236.5 112 100.0
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 4.2e-19 98.2 64 75.0
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 9.4e-19 97.1 45 97.8
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 1.2e-18 96.7 64 75.0
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 1.2e-18 96.7 64 75.0
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 1.2e-18 96.7 64 75.0
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 1.2e-18 96.7 64 75.0
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 1.2e-18 96.7 64 75.0
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 1.6e-18 96.3 64 73.4
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 1.6e-18 96.3 64 73.4
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 1.6e-18 96.3 64 73.4
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 1.6e-18 96.3 64 73.4
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 1.6e-18 96.3 64 73.4
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 1.6e-18 96.3 64 73.4
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 1.4e-17 93.2 43 97.7
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 8.8e-17 90.5 64 71.9
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 1.2e-16 90.1 64 70.3
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 2.6e-16 89.0 64 68.8
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 2.6e-16 89.0 77 59.7
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 2.6e-16 89.0 64 68.8
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 2.6e-16 89.0 64 68.8
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 3.3e-16 88.6 64 68.8
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 3.3e-16 88.6 64 67.2
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 3.3e-16 88.6 64 70.3
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 3.3e-16 88.6 64 68.8
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 3.3e-16 88.6 64 67.2
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 3.3e-16 88.6 64 67.2
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 4.4e-16 88.2 64 67.2
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 4.4e-16 88.2 64 68.8
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 4.4e-16 88.2 64 68.8
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 4.4e-16 88.2 64 68.8
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 4.4e-16 88.2 64 68.8
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 4.4e-16 88.2 64 67.2
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 4.4e-16 88.2 64 68.8
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 4.4e-16 88.2 64 68.8
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 5.7e-16 87.8 64 67.2
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 7.5e-16 87.4 64 67.2
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 7.5e-16 87.4 64 68.8
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 7.5e-16 87.4 49 79.6
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 7.5e-16 87.4 64 68.8
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 7.5e-16 87.4 64 67.2
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 7.5e-16 87.4 64 67.2
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 7.5e-16 87.4 64 68.8
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 7.5e-16 87.4 64 68.8
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 9.7e-16 87.0 64 67.2
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 9.7e-16 87.0 64 67.2
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 9.7e-16 87.0 45 88.9
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 9.7e-16 87.0 64 68.8
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 9.7e-16 87.0 64 67.2
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 9.7e-16 87.0 64 67.2
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 1.3e-15 86.7 64 67.2
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 1.3e-15 86.7 64 67.2
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 1.3e-15 86.7 64 67.2
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 1.3e-15 86.7 64 68.8
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 1.3e-15 86.7 64 67.2
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 1.7e-15 86.3 64 67.2
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 1.7e-15 86.3 64 67.2
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 1.7e-15 86.3 64 67.2
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 1.7e-15 86.3 64 65.6
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 1.7e-15 86.3 64 68.8
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 1.7e-15 86.3 64 67.2
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 1.7e-15 86.3 64 67.2
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 2.2e-15 85.9 64 67.2
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 2.2e-15 85.9 64 65.6
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 2.2e-15 85.9 64 65.6
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 2.2e-15 85.9 64 67.2
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 2.2e-15 85.9 64 67.2
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 2.8e-15 85.5 64 65.6
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 2.8e-15 85.5 45 84.4
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 2.8e-15 85.5 64 65.6
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 2.8e-15 85.5 64 65.6
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 2.8e-15 85.5 64 67.2
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 3.7e-15 85.1 64 68.8
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 3.7e-15 85.1 64 64.1
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 3.7e-15 85.1 64 64.1
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 3.7e-15 85.1 64 67.2
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 3.7e-15 85.1 64 68.8
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 3.7e-15 85.1 64 67.2
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 4.8e-15 84.7 64 64.1
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 4.8e-15 84.7 64 67.2
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 4.8e-15 84.7 64 64.1
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 4.8e-15 84.7 64 65.6
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 4.8e-15 84.7 64 67.2
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 6.3e-15 84.3 64 64.1
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 6.3e-15 84.3 64 65.6
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 6.3e-15 84.3 64 67.2
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 6.3e-15 84.3 64 65.6
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 8.2e-15 84.0 64 67.2
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 8.2e-15 84.0 64 65.6
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 8.2e-15 84.0 64 65.6
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 8.2e-15 84.0 64 65.6
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 1.1e-14 83.6 64 65.6
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 1.1e-14 83.6 64 65.6
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 1.4e-14 83.2 64 64.1
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 1.4e-14 83.2 64 65.6
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 3.1e-14 82.0 64 62.5
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 9.1e-14 80.5 64 62.5
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 9.1e-14 80.5 64 62.5
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 1.2e-13 80.1 64 62.5
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 1.2e-13 80.1 64 60.9
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 2.0e-13 79.3 66 59.1
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 3.8e-12 75.1 40 85.0
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 5.0e-12 74.7 77 53.2
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 1.5e-11 73.2 64 51.6
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 3.2e-11 72.0 77 50.6
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 2.1e-10 69.3 64 51.6
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 8.0e-10 67.4 45 66.7
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 2.3e-09 65.9 90 44.4
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 5.2e-09 64.7 64 50.0
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 3.4e-08 62.0 94 42.6
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 4.8e-07 58.2 82 48.8
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 8.3e-07 57.4 45 51.1
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 1.4e-06 56.6 46 56.5
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 5.4e-06 54.7 64 39.1


User provided reference genes

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