Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09991 Brassica carinata HOM05D006100 ORTHO05D007539 6.8e-58 227.3 127 100.0
BolC7t43033H Brassica oleracea HOM05D006100 ORTHO05D007539 3.6e-51 204.9 127 83.5
BcaC06g34744 Brassica carinata HOM05D006100 ORTHO05D007539 1.4e-50 203.0 127 82.7
C07p25000 Brassica napus HOM05D006100 ORTHO05D007539 1.4e-50 203.0 127 82.7
A07p17150 Brassica napus HOM05D006100 ORTHO05D007539 1.1e-47 193.4 127 80.3
BraA07t29442Z Brassica rapa HOM05D006100 ORTHO05D007539 1.1e-47 193.4 127 80.3
BcaB07g29655 Brassica carinata HOM05D006100 ORTHO05D007539 3.9e-45 184.9 128 78.1
Thhalv10005154m.g Eutrema salsugineum HOM05D006100 ORTHO05D007539 4.0e-42 174.9 127 74.0
AT5G66780 Arabidopsis thaliana HOM05D006100 ORTHO05D007539 5.3e-42 174.5 127 75.6
AL8G44670 Arabidopsis lyrata HOM05D006100 ORTHO05D007539 1.2e-41 173.3 127 74.8
CARHR280920 Cardamine hirsuta HOM05D006100 ORTHO05D007539 1.1e-39 166.8 125 72.0
A02p44400 Brassica napus HOM05D006100 ORTHO05D007539 1.2e-38 163.3 129 73.6
BraA02t09357Z Brassica rapa HOM05D006100 ORTHO05D007539 1.2e-38 163.3 129 73.6
Sp2g29900 Schrenkiella parvula HOM05D006100 ORTHO05D007539 1.2e-38 163.3 129 71.3
Carub.0008s2773 Capsella rubella HOM05D006100 ORTHO05D007539 1.8e-34 149.4 126 66.7
THA.LOC104821276 Tarenaya hassleriana HOM05D006100 ORTHO05D007539 1.9e-31 139.4 128 62.5
BcaC03g18400 Brassica carinata HOM05D006100 ORTHO05D007539 2.2e-24 115.9 128 55.5
Thecc.01G036600 Theobroma cacao HOM05D006100 ORTHO05D007539 3.2e-23 112.1 128 53.9
Duzib147G1001 Durio zibethinus HOM05D006100 ORTHO05D007539 7.1e-23 110.9 129 52.7
C02p64790 Brassica napus HOM05D006100 ORTHO05D007539 1.2e-22 110.2 64 87.5
BolC2t12540H Brassica oleracea HOM05D006100 ORTHO05D007539 1.2e-22 110.2 64 87.5
Lj2g0016254 Lotus japonicus HOM05D006100 ORTHO05D007539 6.0e-22 107.8 130 50.8
Aqoxy6G01099 Aquilegia oxysepala HOM05D006100 ORTHO05D007539 2.3e-21 105.9 134 52.2
Aa31LG1G15340 Aethionema arabicum HOM05D006100 ORTHO05D007539 2.5e-20 102.4 66 74.2
Haze_15098 Corylus avellana HOM05D006100 ORTHO05D007539 3.3e-20 102.1 110 55.5
QL06p045927 Quercus lobata HOM05D006100 ORTHO05D007539 3.3e-20 102.1 132 47.7
Medtr5g020060 Medicago truncatula HOM05D006100 ORTHO05D007539 1.3e-19 100.1 128 57.8
Ciclev10026748m.g Citrus clementina HOM05D006100 ORTHO05D007539 1.6e-19 99.8 108 55.6
Lalb_Chr09g0322441 Lupinus albus HOM05D006100 ORTHO05D007539 1.6e-19 99.8 110 54.5
Psat2g159960 Pisum sativum HOM05D006100 ORTHO05D007539 2.8e-19 99.0 129 51.2
Atru.chr3.567 Acer truncatum HOM05D006100 ORTHO05D007539 6.3e-19 97.8 131 49.6
arahy.Tifrunner.gnm1.ann1.L1JEHI Arachis hypogaea HOM05D006100 ORTHO05D007539 8.2e-19 97.4 114 53.5
CiPaw.02G017200 Carya illinoinensis HOM05D006100 ORTHO05D007539 8.2e-19 97.4 73 69.9
Duzib264G0645 Durio zibethinus HOM05D006100 ORTHO05D007539 8.2e-19 97.4 71 70.4
COL.COLO4_22086 Corchorus olitorius HOM05D006100 ORTHO05D007539 1.1e-18 97.1 127 48.8
Dinv39980 Davidia involucrata HOM05D006100 ORTHO05D007539 1.4e-18 96.7 134 44.8
VMungo1215G0978 Vigna mungo HOM05D006100 ORTHO05D007539 1.4e-18 96.7 103 53.4
Lsat_1_v5_gn_4_148381 Lactuca sativa HOM05D006100 ORTHO05D007539 1.8e-18 96.3 130 46.2
Prupe.7G153900 Prunus persica HOM05D006100 ORTHO05D007539 4.1e-18 95.1 129 46.5
TWI09G0021 Tripterygium wilfordii HOM05D006100 ORTHO05D007539 4.1e-18 95.1 101 57.4
HanXRQChr11g0324821 Helianthus annuus HOM05D006100 ORTHO05D007539 6.9e-18 94.4 67 73.1
MD15G1262900 Malus domestica HOM05D006100 ORTHO05D007539 9.0e-18 94.0 131 45.8
Gohir.A11G184500 Gossypium hirsutum HOM05D006100 ORTHO05D007539 1.5e-17 93.2 69 66.7
Sed0016253 Sechium edule HOM05D006100 ORTHO05D007539 2.0e-17 92.8 139 47.5
CiPaw.01G037400 Carya illinoinensis HOM05D006100 ORTHO05D007539 2.6e-17 92.4 71 67.6
arahy.Tifrunner.gnm1.ann1.IKK69W Arachis hypogaea HOM05D006100 ORTHO05D007539 3.4e-17 92.0 114 51.8
ECA232G0790 Erigeron canadensis HOM05D006100 ORTHO05D007539 3.4e-17 92.0 114 51.8
MD02G1148600 Malus domestica HOM05D006100 ORTHO05D007539 3.4e-17 92.0 128 46.1
PSO675G2321 Papaver somniferum HOM05D006100 ORTHO05D007539 4.5e-17 91.7 72 72.2
Gohir.A10G094900 Gossypium hirsutum HOM05D006100 ORTHO05D007539 5.9e-17 91.3 132 46.2
RcHm_v2.0_Chr2g0101741 Rosa chinensis HOM05D006100 ORTHO05D007539 7.6e-17 90.9 132 44.7
Nn5g29589 Nelumbo nucifera HOM05D006100 ORTHO05D007539 1.3e-16 90.1 130 43.1
PSO541G1538 Papaver somniferum HOM05D006100 ORTHO05D007539 1.3e-16 90.1 72 70.8
Phvul.002G029900 Phaseolus vulgaris HOM05D006100 ORTHO05D007539 2.9e-16 89.0 112 50.0
FvH4_1g13380 Fragaria vesca HOM05D006100 ORTHO05D007539 3.8e-16 88.6 130 43.8
FAN19G2702 Fragaria x ananassa HOM05D006100 ORTHO05D007539 3.8e-16 88.6 130 43.8
FAN26G0501 Fragaria x ananassa HOM05D006100 ORTHO05D007539 8.5e-16 87.4 128 43.8
Glyma.11G067900 Glycine max HOM05D006100 ORTHO05D007539 1.1e-15 87.0 128 46.9
MD15G1262800 Malus domestica HOM05D006100 ORTHO05D007539 1.4e-15 86.7 70 64.3
Actinidia19182 Actinidia chinensis HOM05D006100 ORTHO05D007539 1.9e-15 86.3 135 43.0
PGR102G3048 Punica granatum HOM05D006100 ORTHO05D007539 1.9e-15 86.3 115 48.7
Cfa004303 Carpinus fangiana HOM05D006100 ORTHO05D007539 4.2e-15 85.1 79 60.8
FAN23G1739 Fragaria x ananassa HOM05D006100 ORTHO05D007539 4.2e-15 85.1 130 43.8
Oeu009416.1 Olea europaea HOM05D006100 ORTHO05D007539 4.2e-15 85.1 128 43.8
Oeu041448.1 Olea europaea HOM05D006100 ORTHO05D007539 4.2e-15 85.1 128 44.5
CSS0018588 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 9.4e-15 84.0 130 43.8
FvH4_1g13390 Fragaria vesca HOM05D006100 ORTHO05D007539 1.2e-14 83.6 109 47.7
FAN19G3207 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.2e-14 83.6 109 47.7
FAN28G1903 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.2e-14 83.6 110 46.4
Cpa.g.sc6.110 Carica papaya HOM05D006100 ORTHO05D007539 6.1e-14 81.3 141 44.0
Rhsim08G0115500 Rhododendron simsii HOM05D006100 ORTHO05D007539 7.9e-14 80.9 129 46.5
ClCG01G019510 Citrullus lanatus HOM05D006100 ORTHO05D007539 1.4e-13 80.1 121 44.6
Os03g0723400 Oryza sativa ssp. japonica HOM05D006100 ORTHO05D007539 2.3e-13 79.3 62 62.9
RcHm_v2.0_Chr2g0101751 Rosa chinensis HOM05D006100 ORTHO05D007539 2.3e-13 79.3 109 44.0
CANSAT01G1084 Cannabis sativa HOM05D006100 ORTHO05D007539 3.9e-13 78.6 112 46.4
Eucgr.I02450 Eucalyptus grandis HOM05D006100 ORTHO05D007539 3.9e-13 78.6 71 64.8
Manes.01G135000 Manihot esculenta HOM05D006100 ORTHO05D007539 5.1e-13 78.2 92 51.1
vmacro17841 Vaccinium macrocarpon HOM05D006100 ORTHO05D007539 5.1e-13 78.2 75 53.3
PGR119G0418 Punica granatum HOM05D006100 ORTHO05D007539 1.5e-12 76.6 108 46.3
Migut.H00995 Erythranthe guttata HOM05D006100 ORTHO05D007539 3.3e-12 75.5 141 44.0
SGA_v2.0_scaffold276G46633 Striga asiatica HOM05D006100 ORTHO05D007539 3.3e-12 75.5 114 50.0
FAN28G0382 Fragaria x ananassa HOM05D006100 ORTHO05D007539 4.3e-12 75.1 61 63.9
TPR.G34229 Trifolium pratense HOM05D006100 ORTHO05D007539 4.3e-12 75.1 114 46.5
MD02G1148700 Malus domestica HOM05D006100 ORTHO05D007539 5.7e-12 74.7 132 37.1
Nitab4.5_0001385g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 7.4e-12 74.3 135 45.2
TAR376G0804 Trochodendron aralioides HOM05D001794 ORTHO05D004177 9.7e-12 73.9 115 45.2
GSVIVG01018974001 Vitis vinifera HOM05D006100 ORTHO05D007539 9.7e-12 73.9 109 44.0
Nitab4.5_0003233g0010 Nicotiana tabacum HOM05D006100 ORTHO05D007539 1.3e-11 73.6 135 42.2
Gohir.D10G093000 Gossypium hirsutum HOM05D006100 ORTHO05D007539 1.7e-11 73.2 133 41.4
FAN23G0264 Fragaria x ananassa HOM05D006100 ORTHO05D007539 2.2e-11 72.8 72 59.7
MSTRG.2759 Avicennia marina HOM05D006100 ORTHO05D007539 4.8e-11 71.6 70 57.1
Nitab4.5_0000434g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 4.8e-11 71.6 136 44.1
CsaV3_6G046200 Cucumis sativus L. HOM05D006100 ORTHO05D007539 1.4e-10 70.1 125 41.6
Solyc02g062770.2 Solanum lycopersicum HOM05D006100 ORTHO05D007539 1.8e-10 69.7 66 60.6
PGSC0003DMG400015478 Solanum tuberosum HOM05D006100 ORTHO05D007539 1.8e-10 69.7 131 38.9
Sopen02g013800 Solanum pennellii HOM05D006100 ORTHO05D007539 4.1e-10 68.6 66 60.6
Prupe.7G153800 Prunus persica HOM05D006100 ORTHO05D007539 5.3e-10 68.2 130 47.7
Peaxi162Scf00008g03716 Petunia axillaris HOM05D006100 ORTHO05D007539 9.1e-10 67.4 62 59.7
FAN26G1330 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.5e-09 66.6 62 58.1
CAN.G358.97 Capsicum annuum HOM05D006100 ORTHO05D007539 2.6e-09 65.9 136 41.2
Peaxi162Scf00515g00519 Petunia axillaris HOM05D006100 ORTHO05D007539 2.6e-09 65.9 128 42.2
MBI16_g38642_MAGBIO Magnolia biondii HOM05D006100 ORTHO05D007539 1.3e-08 63.5 85 45.9
Solyc02g085330.1 Solanum lycopersicum HOM05D006100 ORTHO05D007539 1.7e-08 63.2 111 43.2
Sopen02g030020 Solanum pennellii HOM05D006100 ORTHO05D007539 1.7e-08 63.2 129 41.9
unitig_21.g20955 Utricularia gibba HOM05D003234 ORTHO05D003635 2.2e-08 62.8 95 46.3
Oeu033643.1 Olea europaea HOM05D006100 ORTHO05D007539 6.5e-08 61.2 50 66.0
EL10Ac6g15568 Beta vulgaris HOM05D006100 ORTHO05D007539 8.5e-08 60.8 67 52.2
CDE01G0731 Ceratophyllum demersum HOM05D006100 ORTHO05D007539 8.5e-08 60.8 60 60.0
CSS0029658 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 1.1e-07 60.5 87 39.1
HanXRQChr16g0530351 Helianthus annuus HOM05D006100 ORTHO05D007539 1.1e-07 60.5 133 34.6
MELO3C007824.2 Cucumis melo HOM05D006100 ORTHO05D007539 2.5e-07 59.3 111 41.4
Glyma.16G140500 Glycine max HOM05D006100 ORTHO05D007539 5.5e-07 58.2 128 40.6
Gorai.011G102200 Gossypium raimondii HOM05D006100 ORTHO05D007539 5.5e-07 58.2 97 41.2
Nitab4.5_0000136g0440 Nicotiana tabacum HOM05D006100 ORTHO05D007539 1.2e-06 57.0 166 34.9
AUR62004046 Chenopodium quinoa HOM05D006100 ORTHO05D007539 1.6e-06 56.6 95 41.1
unitig_899.g14492 Utricularia gibba HOM05D006100 ORTHO05D007539 1.6e-06 56.6 117 39.3


User provided reference genes

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