Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 7.8e-81 303.9 173 100.0
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 2.4e-74 282.3 173 91.9
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 2.4e-74 282.3 173 91.9
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 3.2e-74 282.0 173 93.6
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 3.2e-74 282.0 173 93.6
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 9.3e-74 280.4 173 93.1
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 4.6e-65 251.5 177 85.3
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 4.0e-61 238.4 177 76.8
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 4.0e-61 238.4 177 76.8
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 4.0e-61 238.4 177 76.8
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 4.0e-61 238.4 177 80.8
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 5.8e-60 234.6 177 75.7
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 5.8e-60 234.6 177 75.7
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 7.1e-58 227.6 182 79.7
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 2.4e-53 212.6 178 76.4
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 3.1e-53 212.2 173 70.5
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 3.1e-53 212.2 173 70.5
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 9.0e-53 210.7 173 70.5
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 2.6e-52 209.1 181 69.1
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 3.4e-52 208.8 173 69.9
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 2.9e-51 205.7 173 69.4
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 3.8e-51 205.3 182 75.8
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 4.3e-47 191.8 173 65.3
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 7.7e-44 181.0 182 70.9
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.3e-27 127.1 187 46.5
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 3.6e-25 119.0 191 51.3
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.4e-21 107.1 197 49.2
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 5.9e-20 101.7 209 36.4
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 5.9e-20 101.7 192 39.6
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 1.3e-19 100.5 209 35.9
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 6.5e-19 98.2 126 47.6
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 8.5e-19 97.8 176 39.8
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.1e-18 97.4 192 39.1
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 1.5e-18 97.1 137 43.8
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 1.9e-18 96.7 202 35.6
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 2.5e-18 96.3 102 55.9
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 2.5e-18 96.3 197 36.5
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 3.2e-18 95.9 141 44.0
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 4.2e-18 95.5 137 43.1
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 7.2e-18 94.7 214 35.0
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 7.2e-18 94.7 138 43.5
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 7.2e-18 94.7 183 37.7
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 9.4e-18 94.4 136 41.9
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 1.2e-17 94.0 135 45.2
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.2e-17 94.0 172 41.3
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 2.7e-17 92.8 141 40.4
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 2.7e-17 92.8 119 45.4
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 3.6e-17 92.4 121 43.8
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 4.7e-17 92.0 136 44.9
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 6.1e-17 91.7 138 43.5
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 6.1e-17 91.7 135 43.0
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 6.1e-17 91.7 136 41.9
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 8.0e-17 91.3 111 50.5
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 1.0e-16 90.9 115 44.3
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 1.0e-16 90.9 135 43.0
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 1.4e-16 90.5 120 45.0
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 1.8e-16 90.1 181 37.6
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 1.8e-16 90.1 132 46.2
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.3e-16 89.7 108 49.1
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 2.3e-16 89.7 217 34.1
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 4.0e-16 89.0 115 45.2
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 4.0e-16 89.0 190 35.3
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 4.0e-16 89.0 130 44.6
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 4.0e-16 89.0 134 46.3
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 4.0e-16 89.0 200 35.5
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 5.2e-16 88.6 192 35.4
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 6.8e-16 88.2 120 47.5
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 6.8e-16 88.2 100 49.0
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 8.8e-16 87.8 136 41.9
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 8.8e-16 87.8 178 39.9
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 1.2e-15 87.4 113 46.9
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.2e-15 87.4 141 40.4
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.5e-15 87.0 122 45.9
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.5e-15 87.0 220 33.6
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 1.5e-15 87.0 181 37.0
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.5e-15 87.0 181 37.0
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 1.5e-15 87.0 122 45.9
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 2.6e-15 86.3 144 38.2
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 3.4e-15 85.9 116 47.4
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 3.4e-15 85.9 116 47.4
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 3.4e-15 85.9 144 41.0
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 3.4e-15 85.9 192 35.4
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.4e-15 85.5 98 51.0
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 5.7e-15 85.1 220 33.2
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 5.7e-15 85.1 121 47.1
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 5.7e-15 85.1 123 45.5
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 5.7e-15 85.1 208 34.1
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 7.5e-15 84.7 120 41.7
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 7.5e-15 84.7 122 46.7
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 7.5e-15 84.7 98 48.0
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.3e-14 84.0 97 50.5
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 1.3e-14 84.0 144 40.3
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 1.7e-14 83.6 134 42.5
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 1.7e-14 83.6 123 46.3
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 1.7e-14 83.6 123 44.7
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 2.8e-14 82.8 104 50.0
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 2.8e-14 82.8 131 42.0
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 3.7e-14 82.4 214 34.1
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 3.7e-14 82.4 123 42.3
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 3.7e-14 82.4 144 43.8
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 3.7e-14 82.4 115 43.5
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 4.8e-14 82.0 117 46.2
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 4.8e-14 82.0 119 43.7
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 4.8e-14 82.0 135 41.5
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 4.8e-14 82.0 112 45.5
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 6.3e-14 81.6 121 42.1
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 6.3e-14 81.6 214 33.6
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 6.3e-14 81.6 120 45.0
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 8.3e-14 81.3 199 38.2
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 8.3e-14 81.3 123 42.3
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 8.3e-14 81.3 147 42.9
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 8.3e-14 81.3 113 46.9
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 1.1e-13 80.9 116 47.4
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 1.1e-13 80.9 104 47.1
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 1.1e-13 80.9 104 47.1
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 1.1e-13 80.9 134 44.8
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 1.4e-13 80.5 107 45.8
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 1.4e-13 80.5 145 41.4
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.4e-13 80.5 99 47.5
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.8e-13 80.1 191 31.9
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.8e-13 80.1 96 50.0
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.8e-13 80.1 141 36.9
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 2.4e-13 79.7 119 42.9
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 3.1e-13 79.3 117 44.4
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 3.1e-13 79.3 101 49.5
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 7.0e-13 78.2 146 37.0
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 7.0e-13 78.2 102 45.1
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 9.1e-13 77.8 113 42.5
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 9.1e-13 77.8 109 45.9
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 1.2e-12 77.4 113 43.4
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 1.2e-12 77.4 118 40.7
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.6e-12 77.0 130 37.7
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 1.6e-12 77.0 92 46.7
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 3.5e-12 75.9 112 42.9
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 3.5e-12 75.9 112 42.9
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 7.7e-12 74.7 104 43.3
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.0e-11 74.3 50 68.0
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 1.0e-11 74.3 50 68.0
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 1.3e-11 73.9 102 43.1
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 2.2e-11 73.2 104 42.3
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 5.0e-11 72.0 112 42.9
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 5.0e-11 72.0 114 44.7
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 5.0e-11 72.0 92 48.9
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 5.0e-11 72.0 209 29.2
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 8.5e-11 71.2 116 40.5
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 1.1e-10 70.9 103 44.7
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 1.5e-10 70.5 103 44.7
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 2.5e-10 69.7 117 42.7
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 3.2e-10 69.3 46 76.1
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 4.2e-10 68.9 99 45.5
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 5.5e-10 68.6 130 36.9
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 3.6e-09 65.9 44 68.2
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 4.7e-09 65.5 153 32.7
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 4.0e-08 62.4 45 71.1
Zm00001eb264720 Zea mays HOM05D036073 ORTHO05D004462 4.0e-08 62.4 89 40.4
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 8.8e-08 61.2 50 62.0
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.2e-07 60.8 133 34.6
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.2e-07 60.8 133 34.6
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.6e-07 59.7 59 50.8
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 2.2e-06 56.6 91 39.6
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 2.2e-06 56.6 122 36.9
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.2e-06 56.6 140 36.4
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.2e-06 56.6 45 60.0
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 2.2e-06 56.6 46 56.5
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 2.2e-06 56.6 45 60.0
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 2.8e-06 56.2 120 35.8
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 3.7e-06 55.8 119 37.0
Os11g0634200 Oryza sativa ssp. japonica HOM05D029956 ORTHO05D004462 8.3e-06 54.7 43 62.8


User provided reference genes

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