Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09919 Brassica carinata HOM05D007326 ORTHO05D009048 2.1e-28 129.0 106 100.0
AT5G67490 Arabidopsis thaliana HOM05D007326 ORTHO05D009048 2.9e-25 118.6 109 70.6
Carub.0008s2698 Capsella rubella HOM05D007326 ORTHO05D009048 8.3e-25 117.1 106 74.5
Thhalv10005175m.g Eutrema salsugineum HOM05D007326 ORTHO05D009048 1.4e-24 116.3 106 78.3
CARHR280100 Cardamine hirsuta HOM05D007326 ORTHO05D009048 9.2e-24 113.6 108 70.4
A06p32910 Brassica napus HOM05D007326 ORTHO05D009048 2.0e-23 112.5 110 68.2
BraA06t26223Z Brassica rapa HOM05D007326 ORTHO05D009048 2.0e-23 112.5 110 68.2
C03p59560 Brassica napus HOM05D007326 ORTHO05D009048 4.6e-23 111.3 110 66.4
BolC3t18219H Brassica oleracea HOM05D007326 ORTHO05D009048 4.6e-23 111.3 110 66.4
AL8G43810 Arabidopsis lyrata HOM05D007326 ORTHO05D009048 1.3e-22 109.8 109 85.3
Aa31LG1G16060 Aethionema arabicum HOM05D007326 ORTHO05D009048 2.3e-22 109.0 106 61.3
Sp2g29160 Schrenkiella parvula HOM05D007326 ORTHO05D009048 7.3e-21 104.0 110 62.7
THA.LOC104819263 Tarenaya hassleriana HOM05D007326 ORTHO05D009048 6.2e-12 74.3 106 53.8
AUR62010038 Chenopodium quinoa HOM05D007326 ORTHO05D009048 1.4e-11 73.2 35 88.6
AUR62013031 Chenopodium quinoa HOM05D007326 ORTHO05D009048 1.4e-11 73.2 35 88.6
Mapoly0007s0050 Marchantia polymorpha HOM05D007326 ORTHO05D009048 1.8e-11 72.8 34 88.2
QL09p009621 Quercus lobata HOM05D007326 ORTHO05D009048 1.8e-11 72.8 34 85.3
Ciclev10006260m.g Citrus clementina HOM05D007326 ORTHO05D009048 2.3e-11 72.4 35 82.9
Os06g0157800 Oryza sativa ssp. japonica HOM05D007326 ORTHO05D009048 3.1e-11 72.0 34 88.2
Ah.04g150610 Amaranthus hybridus HOM05D007326 ORTHO05D009048 4.0e-11 71.6 35 82.9
MBI06_g08457_MAGBIO Magnolia biondii HOM05D007326 ORTHO05D009048 6.8e-11 70.9 35 85.7
Potri.015G017700 Populus trichocarpa HOM05D007326 ORTHO05D009048 6.8e-11 70.9 35 80.0
PGR042G3637 Punica granatum HOM05D007326 ORTHO05D009048 6.8e-11 70.9 34 88.2
TWI23G0901 Tripterygium wilfordii HOM05D007326 ORTHO05D009048 1.5e-10 69.7 32 90.6
Actinidia06160 Actinidia chinensis HOM05D007326 ORTHO05D009048 2.0e-10 69.3 35 82.9
Gohir.A11G014200 Gossypium hirsutum HOM05D007326 ORTHO05D009048 2.0e-10 69.3 35 77.1
Gohir.D11G014400 Gossypium hirsutum HOM05D007326 ORTHO05D009048 2.0e-10 69.3 35 77.1
Gorai.007G014800 Gossypium raimondii HOM05D007326 ORTHO05D009048 2.0e-10 69.3 35 77.1
SEGI_38766 Sequoiadendron giganteum HOM05D007326 ORTHO05D009048 2.0e-10 69.3 35 82.9
Glyma.07G086800 Glycine max HOM05D007326 ORTHO05D009048 2.6e-10 68.9 35 77.1
Glyma.09G190100 Glycine max HOM05D007326 ORTHO05D009048 2.6e-10 68.9 35 77.1
Manes.06G159200 Manihot esculenta HOM05D007326 ORTHO05D009048 2.6e-10 68.9 35 82.9
CSS0006442 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 3.4e-10 68.6 32 87.5
Dinv29296 Davidia involucrata HOM05D007326 ORTHO05D009048 3.4e-10 68.6 32 87.5
Duzib205G1092 Durio zibethinus HOM05D007326 ORTHO05D009048 3.4e-10 68.6 35 77.1
MSTRG.55 Avicennia marina HOM05D007326 ORTHO05D009048 4.4e-10 68.2 34 82.4
Nn4g24310 Nelumbo nucifera HOM05D000291 ORTHO05D009048 4.4e-10 68.2 35 80.0
CiPaw.06G009800 Carya illinoinensis HOM05D007326 ORTHO05D009048 5.8e-10 67.8 34 79.4
EL10Ac9g21379 Beta vulgaris HOM05D007326 ORTHO05D009048 7.6e-10 67.4 35 80.0
Haze_14278 Corylus avellana HOM05D007326 ORTHO05D009048 7.6e-10 67.4 35 77.1
Sc03g0007330 Simmondsia chinensis HOM05D007326 ORTHO05D009048 7.6e-10 67.4 34 82.4
Thecc.03G195600 Theobroma cacao HOM05D007326 ORTHO05D009048 7.6e-10 67.4 35 77.1
VMungo0464G1195 Vigna mungo HOM05D007326 ORTHO05D009048 7.6e-10 67.4 35 74.3
ATR0762G055 Amborella trichopoda HOM05D007326 ORTHO05D009048 9.9e-10 67.0 34 79.4
CSS0025602 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 9.9e-10 67.0 32 84.4
Cpa.g.sc3.64 Carica papaya HOM05D007326 ORTHO05D009048 9.9e-10 67.0 33 81.8
COL.COLO4_03426 Corchorus olitorius HOM05D007326 ORTHO05D009048 9.9e-10 67.0 35 74.3
Lsat_1_v5_gn_9_58181 Lactuca sativa HOM05D007326 ORTHO05D009048 9.9e-10 67.0 32 84.4
Peaxi162Scf00550g00426 Petunia axillaris HOM05D007326 ORTHO05D009048 9.9e-10 67.0 33 81.8
Atru.chr1.147 Acer truncatum HOM05D007326 ORTHO05D009048 1.3e-09 66.6 32 84.4
ATR0037G036 Amborella trichopoda HOM05D007326 ORTHO05D009048 1.3e-09 66.6 32 84.4
Eucgr.A01472 Eucalyptus grandis HOM05D007326 ORTHO05D009048 1.3e-09 66.6 33 81.8
Lj1g0012737 Lotus japonicus HOM05D007326 ORTHO05D009048 1.3e-09 66.6 32 81.2
CANSAT21G2203 Cannabis sativa HOM05D007326 ORTHO05D009048 1.7e-09 66.2 32 84.4
CDE05G0016 Ceratophyllum demersum HOM05D007326 ORTHO05D009048 1.7e-09 66.2 32 84.4
ECA232G0297 Erigeron canadensis HOM05D007326 ORTHO05D009048 1.7e-09 66.2 32 81.2
TAR629G0302 Trochodendron aralioides HOM05D007326 ORTHO05D009048 1.7e-09 66.2 32 84.4
Actinidia06159 Actinidia chinensis HOM05D007326 ORTHO05D009048 2.2e-09 65.9 35 80.0
Hma1.2p1_0538F.1_g174400 Hydrangea macrophylla HOM05D007326 ORTHO05D009048 2.2e-09 65.9 32 81.2
Sed0023316 Sechium edule HOM05D007326 ORTHO05D009048 2.2e-09 65.9 35 77.1
Actinidia06153 Actinidia chinensis HOM05D003276 ORTHO05D003809 2.9e-09 65.5 35 80.0
Medtr3g109290 Medicago truncatula HOM05D007326 ORTHO05D009048 2.9e-09 65.5 32 78.1
Oeu037093.1 Olea europaea HOM05D007326 ORTHO05D009048 2.9e-09 65.5 31 87.1
Psat0s2030g0040 Pisum sativum HOM05D007326 ORTHO05D009048 2.9e-09 65.5 32 78.1
Rhsim09G0011500 Rhododendron simsii HOM05D007326 ORTHO05D009048 2.9e-09 65.5 32 81.2
TPR.G14875 Trifolium pratense HOM05D007326 ORTHO05D009048 2.9e-09 65.5 32 78.1
vmacro06547 Vaccinium macrocarpon HOM05D007326 ORTHO05D009048 2.9e-09 65.5 32 81.2
Zm00001eb376510 Zea mays HOM05D007326 ORTHO05D009048 2.9e-09 65.5 35 77.1
Nitab4.5_0002492g0030 Nicotiana tabacum HOM05D007326 ORTHO05D009048 3.8e-09 65.1 34 76.5
Solyc03g083450.1 Solanum lycopersicum HOM05D007326 ORTHO05D009048 3.8e-09 65.1 32 84.4
PGSC0003DMG400009118 Solanum tuberosum HOM05D007326 ORTHO05D009048 3.8e-09 65.1 32 84.4
SGA_v2.0_scaffold105G30435 Striga asiatica HOM05D007326 ORTHO05D009048 3.8e-09 65.1 34 79.4
SGA_v2.0_scaffold55G19762 Striga asiatica HOM05D007326 ORTHO05D009048 3.8e-09 65.1 34 79.4
Nitab4.5_0000714g0090 Nicotiana tabacum HOM05D007326 ORTHO05D009048 4.9e-09 64.7 32 81.2
FAN10G1221 Fragaria x ananassa HOM05D007326 ORTHO05D009048 6.4e-09 64.3 32 78.1
Oeu030278.1 Olea europaea HOM05D007326 ORTHO05D009048 8.4e-09 63.9 31 83.9
Sopen03g023220 Solanum pennellii HOM05D007326 ORTHO05D009048 8.4e-09 63.9 32 84.4
Phvul.004G162900 Phaseolus vulgaris HOM05D007326 ORTHO05D009048 1.4e-08 63.2 30 83.3
TPR.G1327 Trifolium pratense HOM05D007326 ORTHO05D009048 1.4e-08 63.2 31 77.4
Ca_15635_v3 Cicer arietinum L. HOM05D007326 ORTHO05D009048 1.9e-08 62.8 30 80.0
unitig_8.g3560 Utricularia gibba HOM05D000146 ORTHO05D000178 1.9e-08 62.8 32 81.2
Aqoxy7G00103 Aquilegia oxysepala HOM05D007326 ORTHO05D009048 2.4e-08 62.4 32 78.1
TAR375G0672 Trochodendron aralioides HOM05D007326 ORTHO05D009048 2.4e-08 62.4 32 84.4
ClCG01G000490 Citrullus lanatus HOM05D007326 ORTHO05D009048 3.2e-08 62.0 35 71.4
FAN10G2940 Fragaria x ananassa HOM05D007326 ORTHO05D009048 3.2e-08 62.0 32 75.0
CAN.G108.61 Capsicum annuum HOM05D007326 ORTHO05D009048 4.1e-08 61.6 32 81.2
Pp3c23_5100 Physcomitrium patens HOM05D007326 ORTHO05D009048 4.1e-08 61.6 32 75.0
Manes.05G205250 Manihot esculenta HOM05D007326 ORTHO05D009048 7.1e-08 60.8 35 74.3
CsaV3_5G000570 Cucumis sativus L. HOM05D007326 ORTHO05D009048 1.6e-07 59.7 28 85.7
Cre02.g073800 Chlamydomonas reinhardtii HOM05D007326 ORTHO05D009048 7.8e-07 57.4 34 70.6
MCO04G224 Micromonas commoda HOM05D007326 ORTHO05D009048 7.8e-07 57.4 31 77.4
TAR629G2746 Trochodendron aralioides HOM05D007326 ORTHO05D009048 1.3e-06 56.6 31 80.6
arahy.Tifrunner.gnm1.ann1.SUR8QF Arachis hypogaea HOM05D007326 ORTHO05D009048 1.7e-06 56.2 27 77.8
CBR_g41366 Chara braunii HOM05D007326 ORTHO05D009048 2.3e-06 55.8 26 88.5
PRCOL_00002099 Prasinoderma coloniale HOM05D007326 ORTHO05D009048 2.3e-06 55.8 34 64.7
arahy.Tifrunner.gnm1.ann1.8E5M3M Arachis hypogaea HOM05D007326 ORTHO05D009048 3.9e-06 55.1 27 74.1
Nitab4.5_0000714g0080 Nicotiana tabacum HOM05D001433 ORTHO05D009048 3.9e-06 55.1 32 71.9


User provided reference genes

Program Settings