Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09909 Brassica carinata HOM05D007502 ORTHO05D010230 3.7e-83 311.6 172 100.0
C03p59700 Brassica napus HOM05D007502 ORTHO05D011692 1.3e-56 223.4 170 77.1
BolC3t18232H Brassica oleracea HOM05D007502 ORTHO05D011692 1.3e-56 223.4 170 77.1
BraA06t26210Z Brassica rapa HOM05D007502 ORTHO05D011692 1.5e-55 219.9 168 79.8
A06p32780 Brassica napus HOM05D007502 ORTHO05D011692 2.4e-50 202.6 170 74.7
AT5G67640 Arabidopsis thaliana HOM05D007502 ORTHO05D010230 1.9e-42 176.4 187 65.8
CARHR279950 Cardamine hirsuta HOM05D007502 ORTHO05D010230 5.1e-40 168.3 174 63.8
Thhalv10005075m.g Eutrema salsugineum HOM05D007502 ORTHO05D010230 1.1e-39 167.2 155 69.7
Carub.0008s2683 Capsella rubella HOM05D007502 ORTHO05D010230 2.1e-38 162.9 187 59.9
AL8G43660 Arabidopsis lyrata HOM05D007502 ORTHO05D010230 6.9e-29 131.3 147 61.2
Aa31LG1G16180 Aethionema arabicum HOM05D007502 ORTHO05D010230 2.2e-22 109.8 156 53.8
Ciclev10027603m.g Citrus clementina HOM05D007502 ORTHO05D010230 4.1e-21 105.5 175 45.1
Cpa.g.c26343.2 Carica papaya HOM05D007502 ORTHO05D010230 4.7e-17 92.0 181 42.5
Prupe.6G218900 Prunus persica HOM05D007502 ORTHO05D010230 1.1e-13 80.9 175 42.3
RcHm_v2.0_Chr2g0108411 Rosa chinensis HOM05D007502 ORTHO05D010230 1.8e-13 80.1 169 39.6
Gorai.007G225000 Gossypium raimondii HOM05D007502 ORTHO05D010230 9.1e-13 77.8 172 41.9
Potri.007G006000 Populus trichocarpa HOM05D007502 ORTHO05D010230 7.7e-12 74.7 183 39.9
MD15G1299000 Malus domestica HOM05D007502 ORTHO05D010230 2.2e-11 73.2 179 41.9
Thecc.01G074400 Theobroma cacao HOM05D007502 ORTHO05D010230 2.9e-11 72.8 174 40.2
Duzib187G0517 Durio zibethinus HOM05D007502 ORTHO05D010230 3.8e-11 72.4 182 40.1
Gohir.D11G209800 Gossypium hirsutum HOM05D007502 ORTHO05D010230 3.8e-11 72.4 171 40.9
COL.COLO4_11595 Corchorus olitorius HOM05D007502 ORTHO05D010230 5.0e-11 72.0 181 40.3
CSS0024819 Camellia sinensis var. sinensis HOM05D007502 ORTHO05D010230 6.5e-11 71.6 180 37.2
Glyma.11G046600 Glycine max HOM05D007502 ORTHO05D010230 4.2e-10 68.9 170 38.8
Lalb_Chr05g0213781 Lupinus albus HOM05D007502 ORTHO05D010230 4.2e-10 68.9 171 37.4
QL06p039372 Quercus lobata HOM05D007502 ORTHO05D010230 4.2e-10 68.9 168 39.9
vmacro05426 Vaccinium macrocarpon HOM05D007502 ORTHO05D010230 9.4e-10 67.8 175 35.4
Solyc02g092200.3 Solanum lycopersicum HOM05D007502 ORTHO05D010230 6.1e-09 65.1 168 41.1
PGSC0003DMG401021412 Solanum tuberosum HOM05D007502 ORTHO05D010230 6.1e-09 65.1 166 41.0
CiPaw.01G003100 Carya illinoinensis HOM05D007502 ORTHO05D010230 1.0e-08 64.3 176 37.5
Medtr5g015230 Medicago truncatula HOM05D007502 ORTHO05D010230 1.0e-08 64.3 174 33.9
Psat2g171920 Pisum sativum HOM05D007502 ORTHO05D010230 1.8e-08 63.5 117 39.3
Cc07_g07260 Coffea canephora HOM05D007502 ORTHO05D010230 2.3e-08 63.2 174 34.5
Gohir.A11G213400 Gossypium hirsutum HOM05D007502 ORTHO05D010230 2.3e-08 63.2 171 38.6
Eucgr.I00691 Eucalyptus grandis HOM05D007502 ORTHO05D010230 5.2e-08 62.0 190 35.8
Sopen02g036770 Solanum pennellii HOM05D007502 ORTHO05D010230 5.2e-08 62.0 174 39.7
VMungo1215G1334 Vigna mungo HOM05D007502 ORTHO05D010230 5.2e-08 62.0 180 35.6
arahy.Tifrunner.gnm1.ann1.69I0H7 Arachis hypogaea HOM05D007502 ORTHO05D010230 2.0e-07 60.1 174 34.5
CDE06G1988 Ceratophyllum demersum HOM05D007502 ORTHO05D010230 2.0e-07 60.1 105 40.0
Lj2g0008607 Lotus japonicus HOM05D007502 ORTHO05D010230 2.0e-07 60.1 193 34.7
Sabra07G0004300 Salix brachista HOM05D007502 ORTHO05D010230 2.0e-07 60.1 179 34.6
Cfa004764 Carpinus fangiana HOM05D007502 ORTHO05D010230 2.6e-07 59.7 180 35.6
Phvul.002G009800 Phaseolus vulgaris HOM05D007502 ORTHO05D010230 4.4e-07 58.9 165 34.5
DCAR_025816 Daucus carota HOM05D007502 ORTHO05D010230 5.7e-07 58.5 172 34.3
CSS0004026 Camellia sinensis var. sinensis HOM05D007502 ORTHO05D010230 1.7e-06 57.0 156 35.3
CANSAT01G3167 Cannabis sativa HOM05D007502 ORTHO05D010230 3.7e-06 55.8 168 35.1
Glyma.01G195100 Glycine max HOM05D007502 ORTHO05D010230 4.8e-06 55.5 113 38.1
FAN23G3114 Fragaria x ananassa HOM05D007502 ORTHO05D010230 6.3e-06 55.1 133 37.6
Nitab4.5_0000142g0280 Nicotiana tabacum HOM05D007502 ORTHO05D010230 8.2e-06 54.7 106 42.5
TAR628G1349 Trochodendron aralioides HOM05D007502 ORTHO05D010230 8.2e-06 54.7 172 34.9


User provided reference genes

Program Settings