Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09901 Brassica carinata HOM05D006600 ORTHO05D008446 1.7e-193 679.1 327 100.0
BraA06t26199Z Brassica rapa HOM05D006600 ORTHO05D008446 7.4e-189 663.7 327 97.2
A06p32700 Brassica napus HOM05D006600 ORTHO05D008446 1.3e-188 662.9 327 97.2
C03p59830 Brassica napus HOM05D006600 ORTHO05D008446 1.4e-187 659.4 327 96.3
BolC3t18247H Brassica oleracea HOM05D006600 ORTHO05D008446 1.8e-187 659.1 327 96.6
Thhalv10005718m.g Eutrema salsugineum HOM05D006600 ORTHO05D008446 4.5e-170 601.3 327 87.2
BcaC01g02830 Brassica carinata HOM05D006600 ORTHO05D008446 6.7e-166 587.4 287 96.9
AT5G65860 Arabidopsis thaliana HOM05D006600 ORTHO05D008446 1.4e-158 563.1 327 82.9
THA.LOC104807092 Tarenaya hassleriana HOM05D006600 ORTHO05D008446 8.0e-151 537.3 324 76.5
Sp2g28940 Schrenkiella parvula HOM05D006600 ORTHO05D008446 2.3e-150 535.8 327 78.9
CARHR279850 Cardamine hirsuta HOM05D006600 ORTHO05D008446 2.2e-145 519.2 333 76.6
PSO675G8764 Papaver somniferum HOM05D006600 ORTHO05D008446 1.1e-144 516.9 326 73.9
TPR.G33718 Trifolium pratense HOM05D006600 ORTHO05D008446 1.1e-144 516.9 322 74.5
Psat5g038240 Pisum sativum HOM05D006600 ORTHO05D008446 1.5e-144 516.5 322 73.0
Ah.15g092540 Amaranthus hybridus HOM05D006600 ORTHO05D008446 1.9e-144 516.2 325 71.7
Glyma.04G044500 Glycine max HOM05D006600 ORTHO05D008446 1.9e-144 516.2 327 73.4
Sabra14G0012400 Salix brachista HOM05D006600 ORTHO05D008446 1.2e-143 513.5 326 73.0
Medtr3g102800 Medicago truncatula HOM05D006600 ORTHO05D008446 2.1e-143 512.7 322 72.0
QL12p037547 Quercus lobata HOM05D006600 ORTHO05D008446 8.0e-143 510.8 323 71.8
Carub.0008s2674 Capsella rubella HOM05D006600 ORTHO05D008446 1.8e-142 509.6 327 75.8
HanXRQChr10g0304021 Helianthus annuus HOM05D006600 ORTHO05D008446 1.8e-142 509.6 326 73.6
CiPaw.08G048500 Carya illinoinensis HOM05D006600 ORTHO05D008446 4.0e-142 508.4 320 74.1
Manes.18G044200 Manihot esculenta HOM05D006600 ORTHO05D008446 5.2e-142 508.1 323 71.8
unitig_62.g23648 Utricularia gibba HOM05D006600 ORTHO05D008446 4.1e-139 498.4 320 71.2
MBI16_g13383_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D008446 7.0e-139 497.7 320 72.8
AUR62038783 Chenopodium quinoa HOM05D006600 ORTHO05D008446 1.2e-138 496.9 325 67.7
CDE04G0491 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 5.9e-138 494.6 326 70.2
Sopen04g031730 Solanum pennellii HOM05D006600 ORTHO05D008446 1.0e-137 493.8 323 69.7
SGA_v2.0_scaffold244G44349 Striga asiatica HOM05D006600 ORTHO05D008446 1.7e-137 493.0 318 70.1
Thecc.08G092000 Theobroma cacao HOM05D006600 ORTHO05D008446 8.5e-137 490.7 321 70.7
Solyc04g078120.3 Solanum lycopersicum HOM05D006600 ORTHO05D008446 1.5e-136 490.0 323 69.0
Oeu050861.1 Olea europaea HOM05D006600 ORTHO05D008446 2.5e-136 489.2 322 69.3
Nitab4.5_0000934g0020 Nicotiana tabacum HOM05D006600 ORTHO05D008446 1.0e-134 483.8 323 69.7
Nitab4.5_0003228g0070 Nicotiana tabacum HOM05D006600 ORTHO05D008446 6.8e-134 481.1 323 69.3
AUR62037454 Chenopodium quinoa HOM05D006600 ORTHO05D008446 6.3e-132 474.6 325 65.5
PSO541G2868 Papaver somniferum HOM05D006600 ORTHO05D008446 2.4e-131 472.6 326 68.1
CAN.G1054.24 Capsicum annuum HOM05D006600 ORTHO05D008446 2.0e-130 469.5 283 73.9
Lj4A761T87 Lonicera japonica HOM05D006600 ORTHO05D008446 7.7e-130 467.6 286 73.4
Zm00001eb214310 Zea mays HOM05D006600 ORTHO05D008446 6.8e-126 454.5 319 66.1
Os03g0761200 Oryza sativa ssp. japonica HOM05D006600 ORTHO05D008446 5.7e-125 451.4 318 66.0
HPP92_018760 Vanilla planifolia HOM05D006600 ORTHO05D008446 5.7e-125 451.4 322 65.8
FAN20G2273 Fragaria x ananassa HOM05D006600 ORTHO05D008446 2.8e-124 449.1 325 65.2
BcaC01g02829 Brassica carinata HOM05D006600 ORTHO05D008446 4.9e-124 448.4 228 96.1
COL.COLO4_28538 Corchorus olitorius HOM05D006600 ORTHO05D008446 3.2e-123 445.7 330 65.5
SMO228G0045 Selaginella moellendorffii HOM05D006600 ORTHO05D008446 5.0e-121 438.3 324 62.7
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 1.1e-120 437.2 311 68.2
Rhsim07G0222000 Rhododendron simsii HOM05D006600 ORTHO05D008446 7.3e-120 434.5 323 63.8
Ca_15912_v3 Cicer arietinum L. HOM05D006600 ORTHO05D008446 2.8e-119 432.6 321 63.9
PGSC0003DMG400021533 Solanum tuberosum HOM05D006600 ORTHO05D008446 3.1e-118 429.1 323 62.2
Glyma.06G045000 Glycine max HOM05D006600 ORTHO05D008446 4.0e-118 428.7 325 62.8
CsaV3_2G026260 Cucumis sativus L. HOM05D006600 ORTHO05D008446 6.8e-118 427.9 323 62.5
arahy.Tifrunner.gnm1.ann1.UTGV4K Arachis hypogaea HOM05D006600 ORTHO05D008446 1.2e-117 427.2 326 62.0
PGR083G0558 Punica granatum HOM05D006600 ORTHO05D008446 1.2e-117 427.2 323 64.1
Gorai.009G217900 Gossypium raimondii HOM05D006600 ORTHO05D008446 1.5e-117 426.8 324 63.0
Lalb_Chr23g0267431 Lupinus albus HOM05D006600 ORTHO05D008446 1.5e-117 426.8 326 62.3
arahy.Tifrunner.gnm1.ann1.H62KW4 Arachis hypogaea HOM05D006600 ORTHO05D008446 2.6e-117 426.0 326 62.0
VMungo1309G2568 Vigna mungo HOM05D006600 ORTHO05D008446 2.6e-117 426.0 325 62.2
Ciclev10001599m.g Citrus clementina HOM05D006600 ORTHO05D008446 5.8e-117 424.9 323 62.5
Sed0004073 Sechium edule HOM05D006600 ORTHO05D008446 5.8e-117 424.9 326 62.9
MSTRG.1040 Avicennia marina HOM05D006600 ORTHO05D008446 7.5e-117 424.5 325 62.5
Cc10_g05550 Coffea canephora HOM05D006600 ORTHO05D008446 1.7e-116 423.3 326 62.0
Phvul.009G070400 Phaseolus vulgaris HOM05D006600 ORTHO05D008446 1.7e-116 423.3 325 61.8
ClCG08G016350 Citrullus lanatus HOM05D006600 ORTHO05D008446 3.7e-116 422.2 323 61.9
Gohir.D05G211400 Gossypium hirsutum HOM05D006600 ORTHO05D008446 3.7e-116 422.2 324 62.7
Lsat_1_v5_gn_6_112481 Lactuca sativa HOM05D006600 ORTHO05D008446 4.9e-116 421.8 325 63.7
TWI56G0382 Tripterygium wilfordii HOM05D006600 ORTHO05D008446 4.9e-116 421.8 321 61.7
Migut.C00501 Erythranthe guttata HOM05D006600 ORTHO05D008446 6.4e-116 421.4 319 61.8
Eucgr.F00122 Eucalyptus grandis HOM05D006600 ORTHO05D008446 8.3e-116 421.0 323 62.5
Gohir.A05G207900 Gossypium hirsutum HOM05D006600 ORTHO05D008446 8.3e-116 421.0 324 62.0
Prupe.1G425800 Prunus persica HOM05D006600 ORTHO05D008446 8.3e-116 421.0 323 60.7
vmacro04585 Vaccinium macrocarpon HOM05D006600 ORTHO05D008446 1.4e-115 420.2 326 61.7
Lj1g0008642 Lotus japonicus HOM05D006600 ORTHO05D008446 1.9e-115 419.9 327 60.9
Actinidia38095 Actinidia chinensis HOM05D006600 ORTHO05D008446 3.2e-115 419.1 323 61.6
Dinv44978 Davidia involucrata HOM05D006600 ORTHO05D008446 4.1e-115 418.7 323 61.9
Atru.chr13.803 Acer truncatum HOM05D006600 ORTHO05D008446 7.0e-115 417.9 322 61.8
Cfa013668 Carpinus fangiana HOM05D006600 ORTHO05D008446 7.0e-115 417.9 323 61.3
DCAR_020080 Daucus carota HOM05D006600 ORTHO05D008446 1.6e-114 416.8 323 60.7
CSS0036700 Camellia sinensis var. sinensis HOM05D006600 ORTHO05D008446 2.0e-114 416.4 323 60.7
CANSAT35G1599 Cannabis sativa HOM05D006600 ORTHO05D008446 7.8e-114 414.5 326 61.3
FAN24G1058 Fragaria x ananassa HOM05D006600 ORTHO05D008446 1.0e-113 414.1 325 60.9
EL10As7g23812 Beta vulgaris HOM05D006600 ORTHO05D008446 1.3e-113 413.7 367 54.8
FvH4_2g33350 Fragaria vesca HOM05D006600 ORTHO05D008446 1.3e-113 413.7 325 60.9
FAN15G1504 Fragaria x ananassa HOM05D006600 ORTHO05D008446 1.3e-113 413.7 325 61.2
GSVIVG01009372001 Vitis vinifera HOM05D006600 ORTHO05D008446 1.3e-113 413.7 247 74.5
MD08G1088100 Malus domestica HOM05D006600 ORTHO05D008446 3.0e-113 412.5 323 60.1
Peaxi162Scf00081g00125 Petunia axillaris HOM05D006600 ORTHO05D008446 3.0e-113 412.5 323 60.4
Aqoxy6G02751 Aquilegia oxysepala HOM05D006600 ORTHO05D008446 5.0e-113 411.8 328 60.1
MELO3C010818.2 Cucumis melo HOM05D006600 ORTHO05D008446 5.0e-113 411.8 323 61.0
TAR625G0631 Trochodendron aralioides HOM05D006600 ORTHO05D008446 3.3e-112 409.1 323 59.4
RcHm_v2.0_Chr6g0309231 Rosa chinensis HOM05D006600 ORTHO05D008446 4.3e-112 408.7 325 60.0
SalBow7G4697 Salvia bowleyana HOM05D006600 ORTHO05D008446 3.6e-111 405.6 321 59.2
Hma1.2p1_0923F.1_g236990 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 5.2e-110 401.7 324 59.9
Duzib093G2027 Durio zibethinus HOM05D006600 ORTHO05D008446 9.8e-109 397.5 263 69.6
ATR0030G048 Amborella trichopoda HOM05D006600 ORTHO05D008446 1.3e-108 397.1 331 59.2
FAN27G3009 Fragaria x ananassa HOM05D006600 ORTHO05D008446 1.7e-108 396.7 325 58.8
Haze_22302 Corylus avellana HOM05D006600 ORTHO05D008446 6.4e-108 394.8 323 58.8
Cpa.g.sc21.115 Carica papaya HOM05D006600 ORTHO05D008446 7.1e-107 391.3 237 73.8
COL.COLO4_28541 Corchorus olitorius HOM05D006600 ORTHO05D008446 3.0e-105 386.0 251 72.5
SEGI_28402 Sequoiadendron giganteum HOM05D006600 ORTHO05D008446 1.2e-103 380.6 320 56.9
AL8G43570 Arabidopsis lyrata HOM05D006600 ORTHO05D008446 8.1e-95 351.3 252 69.4
AagrBONN_evm.TU.Sc2ySwM_228.1907 Anthoceros agrestis HOM05D006600 ORTHO05D008446 2.6e-93 346.3 325 52.9
Mapoly0063s0069 Marchantia polymorpha HOM05D006600 ORTHO05D008446 5.8e-93 345.1 321 53.3
Nn1g04625 Nelumbo nucifera HOM05D006600 ORTHO05D008446 7.1e-91 338.2 325 52.3
Cre01.g050050 Chlamydomonas reinhardtii HOM05D006600 ORTHO05D008446 1.1e-86 324.3 374 43.3
Potri.014G019000 Populus trichocarpa HOM05D006600 ORTHO05D008446 4.2e-83 312.4 264 58.3
ECA246G2737 Erigeron canadensis HOM05D006600 ORTHO05D008446 2.7e-82 309.7 263 59.3
Hma1.2p1_0923F.1_g236980 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 1.2e-77 294.3 281 53.7
Sc26g0004110 Simmondsia chinensis HOM05D006600 ORTHO05D008446 3.2e-75 286.2 253 55.3
MCO09G534 Micromonas commoda HOM05D006600 ORTHO05D008446 5.5e-67 258.8 329 40.1
Pp3c17_19880 Physcomitrium patens HOM05D006600 ORTHO05D008446 1.0e-65 254.6 249 51.8
CBR_g40512 Chara braunii HOM05D000409 ORTHO05D000184 4.3e-56 222.6 192 52.6
MD15G1072900 Malus domestica HOM05D006600 ORTHO05D008446 9.7e-56 221.5 193 56.0
TAR624G0301 Trochodendron aralioides HOM05D006600 ORTHO05D008446 7.9e-50 201.8 140 63.6
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 1.0e-44 184.9 124 66.1
TAR374G0485 Trochodendron aralioides HOM05D000474 ORTHO05D003648 9.4e-43 178.3 128 60.2
Actinidia08258 Actinidia chinensis HOM05D006600 ORTHO05D008446 1.9e-35 154.1 96 68.8
CBR_g40511 Chara braunii HOM05D000019 ORTHO05D000002 5.0e-28 129.4 151 48.3
GSVIVG01038121001 Vitis vinifera HOM05D006600 ORTHO05D008446 2.0e-21 107.5 87 56.3
Oeu040380.1 Olea europaea HOM05D006600 ORTHO05D008446 3.1e-14 83.6 84 53.6
MBI16_g35586_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D001493 4.5e-13 79.7 66 59.1
Actinidia08259 Actinidia chinensis HOM05D006600 ORTHO05D008446 2.0e-08 64.3 52 57.7
Dinv39240 Davidia involucrata HOM05D006600 ORTHO05D008446 4.9e-07 59.7 92 41.3
Prupe.6G259700 Prunus persica HOM05D037056 ORTHO05D335045 2.4e-06 57.4 46 56.5
Prupe.1G327800 Prunus persica HOM05D037056 ORTHO05D335556 5.4e-06 56.2 46 56.5


User provided reference genes

Program Settings