Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 3.7e-180 634.8 328 100.0
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 3.0e-158 562.0 329 92.4
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 1.1e-157 560.1 329 92.4
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 5.0e-153 544.7 329 90.3
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 5.0e-153 544.7 329 90.3
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 5.0e-153 544.7 329 90.3
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 2.7e-138 495.7 349 79.1
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 1.0e-137 493.8 344 78.5
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 5.2e-118 428.3 327 74.3
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 3.4e-117 425.6 333 71.5
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 9.2e-115 417.5 334 71.9
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 2.1e-114 416.4 334 71.6
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 4.6e-114 415.2 336 72.0
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 7.3e-112 407.9 343 69.1
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 2.1e-111 406.4 342 70.5
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 2.0e-109 399.8 339 68.7
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 3.0e-105 386.0 338 67.5
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 4.7e-103 378.6 305 70.2
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 2.0e-93 346.7 355 60.0
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.0e-81 307.8 348 56.0
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 4.0e-78 295.8 363 53.2
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.8e-73 280.4 330 53.3
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 7.6e-69 265.0 332 52.4
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 5.9e-61 238.8 338 49.1
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.1e-59 234.6 358 46.6
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 5.5e-59 232.3 336 50.3
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 3.6e-58 229.6 339 47.2
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 5.3e-54 215.7 337 46.0
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 5.3e-54 215.7 337 46.0
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 1.1e-51 208.0 337 45.1
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 1.4e-51 207.6 334 44.3
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 5.5e-51 205.7 268 53.4
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 1.3e-44 184.5 377 37.9
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 2.1e-42 177.2 368 38.0
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.0e-41 174.9 366 36.9
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 4.0e-41 172.9 359 37.0
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 6.7e-41 172.2 332 39.5
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 6.7e-41 172.2 364 37.4
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 1.5e-40 171.0 91 95.6
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 4.4e-40 169.5 361 38.0
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 5.7e-40 169.1 336 38.1
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 1.1e-38 164.9 366 36.1
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 1.6e-37 161.0 350 37.1
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 2.7e-37 160.2 360 36.4
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 3.5e-37 159.8 364 34.6
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 1.0e-36 158.3 375 36.0
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 2.2e-36 157.1 120 61.7
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.2e-36 157.1 341 37.2
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 2.2e-36 157.1 378 33.9
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 3.8e-36 156.4 331 36.3
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 1.1e-35 154.8 367 37.9
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.1e-35 154.8 347 35.7
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.1e-35 154.8 347 35.7
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 3.2e-35 153.3 388 34.8
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 3.2e-35 153.3 381 34.4
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.6e-34 151.0 332 36.1
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 2.1e-34 150.6 365 33.2
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 2.7e-34 150.2 365 32.9
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 2.7e-34 150.2 357 35.0
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 6.1e-34 149.1 357 35.0
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 8.0e-34 148.7 341 36.1
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.8e-33 147.5 365 35.1
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 3.0e-33 146.7 352 33.8
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 4.0e-33 146.4 364 35.4
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 4.0e-33 146.4 364 35.2
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 4.0e-33 146.4 205 46.8
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 1.2e-32 144.8 379 32.7
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.5e-32 144.4 365 35.1
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 1.5e-32 144.4 301 36.2
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 2.0e-32 144.1 361 37.1
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 3.4e-32 143.3 364 34.6
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 5.7e-32 142.5 352 36.1
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 7.5e-32 142.1 341 34.6
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 9.8e-32 141.7 372 35.5
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 4.8e-31 139.4 149 49.0
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 4.8e-31 139.4 315 34.9
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 1.1e-30 138.3 368 30.4
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 7.0e-30 135.6 207 43.0
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 2.0e-29 134.0 204 40.7
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 2.0e-29 134.0 330 34.2
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 3.5e-29 133.3 357 33.1
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 5.0e-28 129.4 150 44.7
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 8.5e-28 128.6 187 41.7
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 3.2e-27 126.7 200 40.0
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 3.2e-27 126.7 161 41.6
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 7.2e-27 125.6 324 33.3
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 7.2e-27 125.6 332 32.5
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 1.6e-26 124.4 189 42.9
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 2.1e-26 124.0 332 33.4
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 2.1e-26 124.0 362 32.3
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 2.8e-26 123.6 324 32.4
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 2.8e-26 123.6 320 32.2
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 2.8e-26 123.6 340 33.2
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 6.1e-26 122.5 314 35.4
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 1.4e-25 121.3 201 36.3
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 1.4e-25 121.3 310 31.9
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.8e-25 120.9 366 30.6
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 2.3e-25 120.6 333 32.1
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 1.5e-24 117.9 313 32.6
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 2.0e-24 117.5 318 32.7
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 4.4e-24 116.3 343 33.2
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 1.3e-23 114.8 167 43.1
C03p45450 Brassica napus HOM05D005306 ORTHO05D006158 1.7e-23 114.4 141 50.4
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 1.7e-23 114.4 255 34.9
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 2.2e-23 114.0 262 32.1
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 2.8e-23 113.6 156 41.7
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 1.1e-22 111.7 248 32.3
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 1.1e-22 111.7 248 32.3
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 1.4e-22 111.3 337 31.8
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 1.8e-22 110.9 206 36.4
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 4.1e-22 109.8 309 32.7
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 9.2e-22 108.6 161 41.0
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 2.0e-21 107.5 324 32.7
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 2.7e-21 107.1 358 29.6
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 2.7e-21 107.1 359 29.0
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 3.5e-21 106.7 196 35.2
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 1.0e-20 105.1 334 31.1
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 1.7e-20 104.4 347 29.7
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 1.7e-20 104.4 194 36.1
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 5.0e-20 102.8 338 32.2
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.5e-19 101.3 321 32.1
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 1.5e-19 101.3 171 39.8
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 2.5e-19 100.5 348 29.3
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 4.3e-19 99.8 308 27.6
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 1.2e-18 98.2 111 49.5
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.0e-17 95.1 320 30.9
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.8e-17 94.4 167 37.7
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 4.9e-15 86.3 294 27.2
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 8.3e-15 85.5 366 28.7
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 1.2e-13 81.6 319 29.5
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 5.0e-12 76.3 111 43.2
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 2.5e-11 73.9 87 44.8
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 6.2e-10 69.3 323 27.9
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 1.4e-09 68.2 300 28.0
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 2.0e-08 64.3 312 27.6
BcaC05g28701 Brassica carinata HOM05D005306 ORTHO05D006158 3.4e-08 63.5 72 52.8
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 4.4e-08 63.2 164 26.2
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 7.5e-08 62.4 159 28.9
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 2.2e-07 60.8 126 31.7
Lsat_1_v5_gn_9_60041 Lactuca sativa HOM05D003400 ORTHO05D003687 1.4e-06 58.2 175 28.6
BcaNung06448 Brassica carinata HOM05D005306 ORTHO05D006158 4.1e-06 56.6 205 31.7
Aqoxy4G02422 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 5.4e-06 56.2 190 27.9
ClCG07G005110 Citrullus lanatus HOM05D003400 ORTHO05D003687 9.2e-06 55.5 123 31.7
THA.LOC104823169 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 9.2e-06 55.5 129 28.7


User provided reference genes

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