Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 1.6e-106 389.4 201 100.0
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 8.2e-98 360.5 201 91.5
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 2.0e-96 355.9 201 91.5
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 2.0e-96 355.9 201 91.5
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 2.0e-96 355.9 201 91.5
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 1.8e-84 316.2 201 83.1
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 1.5e-83 313.2 201 83.1
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 3.3e-83 312.0 204 81.9
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 1.8e-81 306.2 173 90.8
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 9.1e-81 303.9 204 79.9
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 2.3e-76 289.3 203 77.8
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 1.2e-75 287.0 201 77.1
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 9.2e-57 224.2 205 62.9
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 1.2e-56 223.8 207 61.8
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 1.2e-56 223.8 207 61.8
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 1.0e-55 220.7 205 61.5
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 1.3e-55 220.3 200 62.5
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 2.3e-55 219.5 207 62.8
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 3.8e-55 218.8 204 61.8
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 3.8e-55 218.8 200 61.5
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 1.5e-54 216.9 200 61.5
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 6.1e-53 211.5 197 61.4
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 6.1e-53 211.5 197 58.4
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 2.3e-52 209.5 200 59.0
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 4.0e-52 208.8 204 58.8
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 3.0e-47 192.6 199 55.8
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 1.6e-37 160.2 202 47.0
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 5.8e-35 151.8 196 44.4
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 2.4e-33 146.4 195 42.6
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 5.4e-33 145.2 200 43.0
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 1.2e-32 144.1 214 42.5
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 1.6e-32 143.7 203 43.3
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 2.7e-32 142.9 193 40.9
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 1.3e-31 140.6 209 41.6
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 1.7e-31 140.2 199 41.2
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 3.0e-31 139.4 197 40.1
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 3.9e-31 139.0 193 42.0
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 3.9e-31 139.0 200 41.5
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 3.9e-31 139.0 200 41.5
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 3.9e-31 139.0 200 41.5
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 3.9e-31 139.0 200 41.5
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 1.1e-30 137.5 194 41.8
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 2.5e-30 136.3 206 40.8
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 5.6e-30 135.2 204 41.2
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 5.6e-30 135.2 200 40.5
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 7.3e-30 134.8 198 38.4
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 1.6e-29 133.7 203 39.9
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 2.1e-29 133.3 123 61.0
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 2.8e-29 132.9 194 40.2
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 2.8e-29 132.9 208 38.9
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 8.1e-29 131.3 208 39.4
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 8.1e-29 131.3 208 38.9
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 2.4e-28 129.8 200 38.5
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 5.2e-28 128.6 197 42.1
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 5.2e-28 128.6 205 40.0
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 8.9e-28 127.9 206 41.3
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 8.9e-28 127.9 202 40.6
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 8.9e-28 127.9 202 40.6
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 8.9e-28 127.9 197 41.1
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 8.9e-28 127.9 218 40.4
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.2e-27 127.5 197 38.1
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 1.2e-27 127.5 205 39.5
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.6e-27 126.3 206 35.9
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 4.4e-27 125.6 196 38.8
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 4.4e-27 125.6 199 40.2
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 7.6e-27 124.8 201 39.3
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 1.7e-26 123.6 199 39.2
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 3.8e-26 122.5 88 69.3
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 3.8e-26 122.5 208 40.4
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 3.8e-26 122.5 178 39.3
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.1e-25 120.9 199 38.7
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.1e-25 120.9 204 37.3
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 1.1e-25 120.9 198 36.4
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 1.1e-25 120.9 198 36.4
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 1.4e-25 120.6 198 36.4
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 1.9e-25 120.2 199 36.7
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 3.2e-25 119.4 230 37.0
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 3.2e-25 119.4 196 33.7
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 4.2e-25 119.0 207 35.7
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 4.2e-25 119.0 202 37.6
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 4.2e-25 119.0 200 38.0
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 5.4e-25 118.6 202 37.6
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 5.4e-25 118.6 175 38.9
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 7.1e-25 118.2 202 36.6
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 7.1e-25 118.2 199 38.2
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 9.2e-25 117.9 205 34.6
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 9.2e-25 117.9 200 36.5
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.2e-24 117.5 204 37.3
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.2e-24 117.5 202 37.1
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 2.7e-24 116.3 166 41.0
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 3.5e-24 115.9 206 34.0
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 3.5e-24 115.9 203 38.4
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 4.6e-24 115.5 191 36.1
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 4.6e-24 115.5 202 36.1
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 6.0e-24 115.2 186 40.3
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 1.3e-23 114.0 198 34.8
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.7e-23 113.6 208 35.1
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 2.3e-23 113.2 207 35.3
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 2.3e-23 113.2 209 34.9
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 6.6e-23 111.7 212 34.9
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 8.7e-23 111.3 208 34.6
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 1.1e-22 110.9 177 39.0
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.5e-22 109.8 173 39.3
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 2.5e-22 109.8 198 34.8
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 2.5e-22 109.8 204 35.3
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 4.3e-22 109.0 199 36.7
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 4.3e-22 109.0 194 36.1
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 5.6e-22 108.6 233 35.2
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 5.6e-22 108.6 233 35.2
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 9.6e-22 107.8 201 35.3
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 1.6e-21 107.1 205 36.1
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 2.1e-21 106.7 206 32.5
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.6e-21 105.9 191 35.6
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.6e-21 105.9 191 35.6
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 4.7e-21 105.5 201 33.8
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 4.7e-21 105.5 191 35.6
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 8.1e-21 104.8 191 35.1
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 1.1e-20 104.4 195 32.3
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 1.1e-20 104.4 201 33.3
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 1.8e-20 103.6 193 37.3
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 2.4e-20 103.2 107 48.6
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 6.9e-20 101.7 201 32.8
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 9.0e-20 101.3 211 33.2
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 1.2e-19 100.9 202 34.7
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 5.8e-19 98.6 165 38.2
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 5.8e-19 98.6 200 31.5
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 7.6e-19 98.2 203 30.5
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 2.2e-18 96.7 169 37.9
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 2.2e-18 96.7 203 32.0
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 4.9e-18 95.5 201 31.3
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 4.9e-18 95.5 199 32.2
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 8.4e-18 94.7 201 31.3
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 8.4e-18 94.7 201 31.8
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 1.4e-17 94.0 200 29.5
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.9e-17 93.6 196 32.1
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 3.2e-17 92.8 202 33.7
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 4.2e-17 92.4 199 30.7
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 5.4e-17 92.0 182 34.1
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 5.4e-17 92.0 196 32.1
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 9.3e-17 91.3 203 30.0
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 1.2e-16 90.9 198 32.3
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.6e-16 90.5 196 32.1
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 1.6e-16 90.5 202 31.7
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 2.1e-16 90.1 196 32.1
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 2.1e-16 90.1 205 31.7
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 2.1e-16 90.1 203 28.1
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 2.1e-16 90.1 197 34.5
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 2.1e-16 90.1 200 30.5
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 2.7e-16 89.7 212 32.5
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 4.6e-16 89.0 206 34.0
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 4.6e-16 89.0 206 33.0
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 6.0e-16 88.6 170 33.5
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 1.3e-15 87.4 205 34.1
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 1.7e-15 87.0 201 30.8
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 3.0e-15 86.3 197 32.0
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 3.9e-15 85.9 199 29.1
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 5.1e-15 85.5 203 32.5
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 5.1e-15 85.5 199 28.6
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 8.7e-15 84.7 202 30.7
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 1.5e-14 84.0 200 29.0
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 2.5e-14 83.2 204 32.4
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 2.5e-14 83.2 192 30.7
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.3e-14 82.8 119 36.1
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 5.6e-14 82.0 195 29.2
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 9.6e-14 81.3 203 28.6
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 9.6e-14 81.3 192 32.8
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.6e-13 80.5 156 34.6
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 6.2e-13 78.6 84 44.0
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 4.0e-12 75.9 163 31.9
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 5.3e-12 75.5 163 32.5
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.4e-11 72.8 140 33.6
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 3.8e-10 69.3 84 35.7
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.1e-09 67.8 137 38.0
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 1.2e-08 64.3 136 33.1
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 7.9e-08 61.6 137 35.0
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 1.0e-07 61.2 131 38.9
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 1.3e-07 60.8 132 37.1
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 1.3e-07 60.8 139 35.3
SEGI_16345 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 1.8e-07 60.5 125 35.2
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 1.8e-07 60.5 138 34.1
SEGI_26050 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 3.0e-07 59.7 137 32.8
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 5.1e-07 58.9 189 27.0
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 5.1e-07 58.9 136 36.0
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 5.6e-06 55.5 134 32.8


User provided reference genes

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