Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 2.0e-45 185.3 86 100.0
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 4.4e-40 167.5 86 90.7
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 4.4e-40 167.5 86 90.7
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 4.4e-40 167.5 86 90.7
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 4.4e-40 167.5 86 90.7
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 7.4e-40 166.8 86 89.5
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 5.7e-32 140.6 96 72.9
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 3.7e-31 137.9 95 71.6
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 3.1e-30 134.8 94 71.3
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 1.6e-29 132.5 96 72.9
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 2.2e-28 128.6 92 67.4
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 2.1e-26 122.1 66 81.8
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 3.0e-25 118.2 93 66.7
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 3.0e-25 118.2 93 66.7
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 3.0e-25 118.2 93 66.7
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 6.7e-25 117.1 91 63.7
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.5e-16 89.4 95 53.7
Aa31LG1G17280 Aethionema arabicum HOM05D004540 ORTHO05D004852 1.3e-15 86.3 65 66.2
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 8.3e-15 83.6 73 57.5
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 1.4e-14 82.8 104 49.0
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 1.8e-14 82.4 105 51.4
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 1.8e-14 82.4 105 51.4
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 3.1e-14 81.6 105 50.5
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 7.0e-14 80.5 95 50.5
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 1.6e-13 79.3 68 50.0
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 2.0e-13 79.0 95 50.5
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 7.7e-13 77.0 67 56.7
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 7.7e-13 77.0 67 56.7
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 7.7e-13 77.0 67 56.7
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 1.3e-12 76.3 89 44.9
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 1.3e-12 76.3 67 56.7
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 2.3e-12 75.5 67 53.7
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.3e-12 75.5 67 56.7
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 2.9e-12 75.1 69 52.2
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 3.8e-12 74.7 67 55.2
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.5e-11 72.8 69 50.7
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.5e-11 72.8 69 50.7
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.5e-11 72.8 69 50.7
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 2.5e-11 72.0 73 49.3
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 7.2e-11 70.5 82 46.3
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 9.5e-11 70.1 77 46.8
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.2e-10 69.7 71 49.3
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.2e-10 69.7 71 49.3
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 1.6e-10 69.3 67 50.7
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.1e-10 68.9 70 50.0
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 8.0e-10 67.0 79 45.6
BcaC03g13276 Brassica carinata HOM05D004540 ORTHO05D004852 1.0e-09 66.6 71 57.7
C02p04070 Brassica napus HOM05D004540 ORTHO05D004852 1.8e-09 65.9 72 56.9
BolC2t06369H Brassica oleracea HOM05D004540 ORTHO05D004852 1.8e-09 65.9 72 56.9
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 2.3e-09 65.5 70 51.4
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 2.3e-09 65.5 80 40.0
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 2.3e-09 65.5 70 47.1
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 3.0e-09 65.1 75 49.3
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 3.0e-09 65.1 68 45.6
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 5.2e-09 64.3 70 50.0
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 5.2e-09 64.3 70 50.0
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 5.2e-09 64.3 70 50.0
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 5.2e-09 64.3 77 49.4
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 5.2e-09 64.3 67 43.3
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 6.8e-09 63.9 70 51.4
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 6.8e-09 63.9 70 51.4
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 6.8e-09 63.9 69 49.3
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 8.9e-09 63.5 69 50.7
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 8.9e-09 63.5 70 50.0
BraA02t05000Z Brassica rapa HOM05D004540 ORTHO05D004852 8.9e-09 63.5 72 54.2
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 8.9e-09 63.5 70 50.0
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 8.9e-09 63.5 82 46.3
CARHR203600 Cardamine hirsuta HOM05D004540 ORTHO05D004852 1.2e-08 63.2 38 81.6
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.5e-08 62.8 75 46.7
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 1.5e-08 62.8 68 51.5
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 1.5e-08 62.8 68 51.5
A03p04260 Brassica napus HOM05D004540 ORTHO05D004852 2.0e-08 62.4 47 68.1
BolC3t13005H Brassica oleracea HOM05D004540 ORTHO05D004852 2.0e-08 62.4 47 68.1
BraA03t09770Z Brassica rapa HOM05D004540 ORTHO05D004852 2.0e-08 62.4 47 68.1
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 2.0e-08 62.4 66 45.5
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 2.0e-08 62.4 60 51.7
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 2.0e-08 62.4 39 79.5
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 2.6e-08 62.0 70 48.6
A02p00160 Brassica napus HOM05D004540 ORTHO05D004852 2.6e-08 62.0 72 54.2
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 2.6e-08 62.0 70 48.6
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 2.6e-08 62.0 74 43.2
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.6e-08 62.0 74 43.2
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.6e-08 62.0 74 43.2
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 3.4e-08 61.6 59 49.2
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 4.4e-08 61.2 68 41.2
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 4.4e-08 61.2 73 47.9
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 5.7e-08 60.8 75 46.7
Migut.H01103 Erythranthe guttata HOM05D004540 ORTHO05D004852 5.7e-08 60.8 62 46.8
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 5.7e-08 60.8 63 49.2
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 5.7e-08 60.8 66 47.0
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 7.5e-08 60.5 32 81.2
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 7.5e-08 60.5 32 81.2
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 7.5e-08 60.5 32 81.2
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 7.5e-08 60.5 74 41.9
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 7.5e-08 60.5 60 45.0
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 7.5e-08 60.5 73 42.5
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 9.8e-08 60.1 72 45.8
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 9.8e-08 60.1 74 44.6
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 1.3e-07 59.7 71 43.7
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 1.3e-07 59.7 75 45.3
Aa31LG3G17310 Aethionema arabicum HOM05D004540 ORTHO05D004852 1.7e-07 59.3 37 78.4
BcaB01g05659 Brassica carinata HOM05D004540 ORTHO05D004852 1.7e-07 59.3 47 66.0
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.7e-07 59.3 70 45.7
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 2.2e-07 58.9 74 41.9
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 2.8e-07 58.5 70 40.0
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 2.8e-07 58.5 48 54.2
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 3.7e-07 58.2 65 41.5
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 4.9e-07 57.8 66 43.9
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 6.3e-07 57.4 28 78.6
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 8.3e-07 57.0 89 40.4
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 8.3e-07 57.0 65 41.5
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 8.3e-07 57.0 77 39.0
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 1.8e-06 55.8 63 44.4
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.8e-06 55.8 68 41.2
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 2.4e-06 55.5 69 46.4
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 2.4e-06 55.5 69 46.4
BraA10t44817Z Brassica rapa HOM05D004540 ORTHO05D004852 2.4e-06 55.5 26 92.3
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 2.4e-06 55.5 74 41.9
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 7.0e-06 53.9 63 44.4
Carub.0006s0822 Capsella rubella HOM05D004540 ORTHO05D004852 9.2e-06 53.5 28 82.1
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 9.2e-06 53.5 63 42.9


User provided reference genes

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