Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09770 Brassica carinata HOM05D007733 ORTHO05D009786 8.8e-30 132.9 64 100.0
BraA06t25997Z Brassica rapa HOM05D007733 ORTHO05D009786 1.9e-24 115.2 62 85.5
Aa31LG1G18010 Aethionema arabicum HOM05D007733 ORTHO05D009786 7.3e-24 113.2 61 83.6
A06p30480 Brassica napus HOM05D007733 ORTHO05D009786 1.2e-23 112.5 62 83.9
Thhalv10005241m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 2.8e-23 111.3 61 82.0
Thhalv10015230m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 2.6e-21 104.8 62 80.6
THA.LOC104819346 Tarenaya hassleriana HOM05D007733 ORTHO05D009786 9.8e-21 102.8 59 78.0
BcaC01g02637 Brassica carinata HOM05D007733 ORTHO05D009786 1.3e-20 102.4 62 79.0
Carub.0006s0778 Capsella rubella HOM05D007733 ORTHO05D009786 4.9e-20 100.5 62 77.4
AL6G19610 Arabidopsis lyrata HOM05D007733 ORTHO05D009786 6.4e-20 100.1 62 77.4
CARHR204200 Cardamine hirsuta HOM05D007733 ORTHO05D009786 8.3e-20 99.8 62 77.4
AT5G09225 Arabidopsis thaliana HOM05D007733 ORTHO05D009786 1.4e-19 99.0 61 78.7
BcaC03g13244 Brassica carinata HOM05D007733 ORTHO05D009786 4.1e-19 97.4 61 70.5
C02p03760 Brassica napus HOM05D007733 ORTHO05D009786 4.1e-19 97.4 61 70.5
BolC2t06337H Brassica oleracea HOM05D007733 ORTHO05D009786 4.1e-19 97.4 61 70.5
BraA02t04971Z Brassica rapa HOM05D007733 ORTHO05D009786 4.1e-19 97.4 61 72.1
BcaB05g21564 Brassica carinata HOM05D007733 ORTHO05D009786 7.0e-19 96.7 61 70.5
Sp6g34080 Schrenkiella parvula HOM05D007733 ORTHO05D009786 1.2e-18 95.9 63 71.4
Oeu063785.1 Olea europaea HOM05D007733 ORTHO05D009786 5.0e-17 90.5 52 76.9
Potri.016G036400 Populus trichocarpa HOM05D007733 ORTHO05D009786 5.0e-17 90.5 52 76.9
Migut.J01653 Erythranthe guttata HOM05D007733 ORTHO05D009786 6.6e-17 90.1 53 71.7
PGSC0003DMG401008361 Solanum tuberosum HOM05D007733 ORTHO05D009786 2.5e-16 88.2 52 75.0
FAN03G1257 Fragaria x ananassa HOM05D000072 ORTHO05D000026 3.3e-16 87.8 51 70.6
FAN06G4775 Fragaria x ananassa HOM05D007733 ORTHO05D009786 3.3e-16 87.8 51 70.6
FAN10G3322 Fragaria x ananassa HOM05D000072 ORTHO05D000026 3.3e-16 87.8 51 70.6
Potri.006G039100 Populus trichocarpa HOM05D007733 ORTHO05D009786 3.3e-16 87.8 58 63.8
MD00G1018100 Malus domestica HOM05D007733 ORTHO05D009786 4.3e-16 87.4 51 74.5
SGA_v2.0_scaffold105G30286 Striga asiatica HOM05D007733 ORTHO05D009786 4.3e-16 87.4 58 67.2
Manes.01G136000 Manihot esculenta HOM05D007733 ORTHO05D009786 7.3e-16 86.7 52 71.2
Solyc10g078420.2 Solanum lycopersicum HOM05D007733 ORTHO05D009786 9.5e-16 86.3 52 73.1
Atru.chr1.1436 Acer truncatum HOM05D007733 ORTHO05D009786 1.2e-15 85.9 57 64.9
RcHm_v2.0_Chr1g0328411 Rosa chinensis HOM05D007733 ORTHO05D009786 1.2e-15 85.9 48 72.9
RcHm_v2.0_Chr1g0328511 Rosa chinensis HOM05D007733 ORTHO05D009786 1.2e-15 85.9 54 64.8
SGA_v2.0_scaffold3G01720 Striga asiatica HOM05D007733 ORTHO05D009786 1.2e-15 85.9 53 71.7
CSS0016184 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 1.6e-15 85.5 61 62.3
CSS0036430 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 1.6e-15 85.5 61 62.3
CsaV3_4G029620 Cucumis sativus L. HOM05D007733 ORTHO05D009786 1.6e-15 85.5 52 71.2
MD12G1095600 Malus domestica HOM05D007733 ORTHO05D009786 2.1e-15 85.1 51 70.6
Phvul.005G122800 Phaseolus vulgaris HOM05D007733 ORTHO05D009786 2.1e-15 85.1 51 72.5
PGR031G3673 Punica granatum HOM05D007733 ORTHO05D009786 2.1e-15 85.1 61 62.3
Thecc.01G129600 Theobroma cacao HOM05D007733 ORTHO05D009786 2.1e-15 85.1 51 72.5
CSS0035024 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 2.8e-15 84.7 61 63.9
CAN.G960.60 Capsicum annuum HOM05D007733 ORTHO05D009786 2.8e-15 84.7 52 71.2
Lalb_Chr06g0173691 Lupinus albus HOM05D007733 ORTHO05D009786 2.8e-15 84.7 52 73.1
Peaxi162Scf00696g00026 Petunia axillaris HOM05D007733 ORTHO05D009786 2.8e-15 84.7 51 72.5
Prupe.7G032300 Prunus persica HOM05D007733 ORTHO05D009786 2.8e-15 84.7 51 72.5
CiPaw.09G048000 Carya illinoinensis HOM05D007733 ORTHO05D009786 3.6e-15 84.3 53 69.8
Hma1.2p1_0757F.1_g213300 Hydrangea macrophylla HOM05D007733 ORTHO05D009786 3.6e-15 84.3 51 72.5
Sed0021033 Sechium edule HOM05D007733 ORTHO05D009786 3.6e-15 84.3 52 69.2
MELO3C019082.2 Cucumis melo HOM05D007733 ORTHO05D009786 4.7e-15 84.0 52 69.2
Gohir.A11G247101 Gossypium hirsutum HOM05D007733 ORTHO05D009786 4.7e-15 84.0 53 67.9
Medtr1g069390 Medicago truncatula HOM05D007733 ORTHO05D009786 4.7e-15 84.0 53 69.8
arahy.Tifrunner.gnm1.ann1.2TE5XM Arachis hypogaea HOM05D007733 ORTHO05D009786 1.0e-14 82.8 59 59.3
Duzib264G0681 Durio zibethinus HOM05D007733 ORTHO05D009786 1.0e-14 82.8 53 69.8
Glyma.12G186000 Glycine max HOM05D007733 ORTHO05D009786 1.4e-14 82.4 51 70.6
Os11g0136701 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 1.4e-14 82.4 51 68.6
Psat4g102040 Pisum sativum HOM05D007733 ORTHO05D009786 1.4e-14 82.4 53 67.9
RcHm_v2.0_Chr1g0328381 Rosa chinensis HOM05D007733 ORTHO05D009786 1.4e-14 82.4 48 70.8
CDE04G2892 Ceratophyllum demersum HOM05D007733 ORTHO05D009786 3.1e-14 81.3 52 67.3
TWI74G1577 Tripterygium wilfordii HOM05D007733 ORTHO05D009786 3.1e-14 81.3 52 67.3
Aqoxy1G00180 Aquilegia oxysepala HOM05D007733 ORTHO05D009786 4.0e-14 80.9 50 68.0
PSO384G4410 Papaver somniferum HOM05D007733 ORTHO05D009786 4.0e-14 80.9 52 65.4
GSVIVG01004069001 Vitis vinifera HOM05D007733 ORTHO05D009786 4.0e-14 80.9 51 68.6
Glyma.13G315500 Glycine max HOM05D007733 ORTHO05D009786 5.2e-14 80.5 51 68.6
Os12g0133600 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 6.8e-14 80.1 51 66.7
Cc06_g19360 Coffea canephora HOM05D007733 ORTHO05D009786 8.9e-14 79.7 52 65.4
vmacro07790 Vaccinium macrocarpon HOM05D007733 ORTHO05D009786 4.4e-13 77.4 48 66.7
HanXRQChr01g0008231 Helianthus annuus HOM05D007733 ORTHO05D009786 7.5e-13 76.6 48 66.7
Oeu022972.2 Olea europaea HOM05D007733 ORTHO05D009786 7.5e-13 76.6 41 78.0
COL.COLO4_35702 Corchorus olitorius HOM05D007733 ORTHO05D009786 9.8e-13 76.3 41 78.0
CANSAT64G1685 Cannabis sativa HOM05D007733 ORTHO05D009786 1.3e-12 75.9 52 63.5
FAN01G2779 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.3e-12 75.9 49 63.3
arahy.Tifrunner.gnm1.ann1.05QC9F Arachis hypogaea HOM05D007733 ORTHO05D009786 1.7e-12 75.5 46 69.6
Nitab4.5_0004588g0050 Nicotiana tabacum HOM05D007733 ORTHO05D009786 1.7e-12 75.5 42 76.2
Sc19g0008160 Simmondsia chinensis HOM05D007733 ORTHO05D009786 2.9e-12 74.7 41 73.2
Gohir.D11G257301 Gossypium hirsutum HOM05D007733 ORTHO05D009786 4.9e-12 73.9 41 73.2
Gorai.007G275700 Gossypium raimondii HOM05D007733 ORTHO05D009786 4.9e-12 73.9 41 73.2
Nitab4.5_0000812g0080 Nicotiana tabacum HOM05D007733 ORTHO05D009786 4.9e-12 73.9 41 75.6
Lsat_1_v5_gn_5_157040 Lactuca sativa HOM05D007733 ORTHO05D009786 8.3e-12 73.2 52 63.5
Peaxi162Scf00848g00014 Petunia axillaris HOM05D007733 ORTHO05D009786 8.3e-12 73.2 41 75.6
MBI19_g20791_MAGBIO Magnolia biondii HOM05D007733 ORTHO05D009786 3.2e-11 71.2 44 65.9
SalBow7G0067 Salvia bowleyana HOM05D007733 ORTHO05D009786 7.0e-11 70.1 57 56.1
Hund24585 Selenicereus undatus HOM05D007733 ORTHO05D009786 9.2e-11 69.7 42 66.7
Manes.02G094502 Manihot esculenta HOM05D007733 ORTHO05D009786 2.0e-10 68.6 41 68.3
Peaxi162Scf00696g00024 Petunia axillaris HOM05D007733 ORTHO05D009786 3.5e-10 67.8 59 61.0
Zm00001eb093420 Zea mays HOM05D007733 ORTHO05D009786 4.6e-10 67.4 49 55.1
HPP92_015863 Vanilla planifolia HOM05D007733 ORTHO05D009786 2.3e-09 65.1 40 65.0
HPP92_015865 Vanilla planifolia HOM05D007733 ORTHO05D009786 2.3e-09 65.1 40 65.0
Mapoly0009s0018 Marchantia polymorpha HOM05D007733 ORTHO05D009786 5.6e-08 60.5 46 56.5
DCAR_027120 Daucus carota HOM05D000958 ORTHO05D000786 4.7e-07 57.4 34 70.6
RcHm_v2.0_Chr1g0328311 Rosa chinensis HOM05D007733 ORTHO05D009786 4.0e-06 54.3 30 70.0
Gohir.A11G247151 Gossypium hirsutum HOM05D007733 ORTHO05D009786 5.2e-06 53.9 53 50.9
CBR_g21252 Chara braunii HOM05D007733 ORTHO05D009786 8.9e-06 53.1 52 44.2


User provided reference genes

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