Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09758 Brassica carinata HOM05D005391 ORTHO05D006694 6.2e-70 267.7 173 100.0
A06p30110 Brassica napus HOM05D005391 ORTHO05D006694 3.9e-64 248.4 176 83.5
BraA06t25962Z Brassica rapa HOM05D005391 ORTHO05D006694 3.9e-64 248.4 176 83.5
C03p62960 Brassica napus HOM05D005391 ORTHO05D006694 3.3e-63 245.4 175 83.4
BolC3t18550H Brassica oleracea HOM05D005391 ORTHO05D006694 7.4e-63 244.2 175 82.9
CARHR277330 Cardamine hirsuta HOM05D005391 ORTHO05D006694 9.0e-61 237.3 173 78.0
Carub.0008s2418 Capsella rubella HOM05D005391 ORTHO05D006694 5.8e-60 234.6 178 86.5
Sp2g26560 Schrenkiella parvula HOM05D005391 ORTHO05D006694 3.8e-59 231.9 178 74.7
AL8G40540 Arabidopsis lyrata HOM05D005391 ORTHO05D006694 4.6e-57 224.9 179 78.8
Aa31LG1G18560 Aethionema arabicum HOM05D005391 ORTHO05D006694 1.3e-56 223.4 184 76.1
A09p08280 Brassica napus HOM05D005391 ORTHO05D006694 1.3e-54 216.9 173 72.8
BraA09t36478Z Brassica rapa HOM05D005391 ORTHO05D006694 1.3e-54 216.9 173 72.3
BcaB04g19920 Brassica carinata HOM05D005391 ORTHO05D006694 1.6e-54 216.5 174 71.8
AT5G63480 Arabidopsis thaliana HOM05D005391 ORTHO05D006694 2.8e-54 215.7 179 84.4
Thhalv10004987m.g Eutrema salsugineum HOM05D005391 ORTHO05D006694 3.7e-54 215.3 182 71.4
BolC9t53848H Brassica oleracea HOM05D005391 ORTHO05D006694 1.7e-51 206.5 166 77.1
BcaC04g23332 Brassica carinata HOM05D005391 ORTHO05D006694 3.5e-49 198.7 166 75.9
C09p09360 Brassica napus HOM05D005391 ORTHO05D006694 3.5e-49 198.7 166 75.9
THA.LOC104798944 Tarenaya hassleriana HOM05D005391 ORTHO05D006694 1.4e-45 186.8 172 66.9
COL.COLO4_28143 Corchorus olitorius HOM05D005391 ORTHO05D006694 6.5e-43 177.9 183 58.5
Gohir.D07G055100 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.9e-42 176.4 180 56.7
Gorai.001G058300 Gossypium raimondii HOM05D005391 ORTHO05D006694 1.9e-42 176.4 180 56.7
Gohir.A07G050600 Gossypium hirsutum HOM05D005391 ORTHO05D006694 2.5e-42 176.0 180 56.7
Thecc.03G130500 Theobroma cacao HOM05D005391 ORTHO05D006694 4.2e-42 175.3 182 55.5
MD15G1005900 Malus domestica HOM05D005391 ORTHO05D006694 7.2e-42 174.5 181 58.0
Duzib205G0229 Durio zibethinus HOM05D005391 ORTHO05D006694 1.6e-41 173.3 187 65.8
MD08G1006700 Malus domestica HOM05D005391 ORTHO05D006694 5.1e-40 168.3 181 56.4
Cpa.g.sc13.100 Carica papaya HOM05D005391 ORTHO05D006694 2.0e-39 166.4 187 58.3
Sabra12G0072400 Salix brachista HOM05D005391 ORTHO05D006694 2.0e-39 166.4 177 60.5
Sed0002904 Sechium edule HOM05D005391 ORTHO05D006694 4.3e-39 165.2 176 52.8
CiPaw.12G044000 Carya illinoinensis HOM05D005391 ORTHO05D006694 7.4e-39 164.5 186 52.7
Actinidia36818 Actinidia chinensis HOM05D005391 ORTHO05D006694 9.7e-39 164.1 175 53.7
Potri.015G097800 Populus trichocarpa HOM05D005391 ORTHO05D006694 1.3e-38 163.7 182 53.8
Dinv23158 Davidia involucrata HOM05D005391 ORTHO05D006694 4.8e-38 161.8 175 56.6
CiPaw.11G006200 Carya illinoinensis HOM05D005391 ORTHO05D006694 6.3e-38 161.4 184 52.7
Manes.14G050400 Manihot esculenta HOM05D005391 ORTHO05D006694 6.3e-38 161.4 194 52.6
Potri.012G099200 Populus trichocarpa HOM05D005391 ORTHO05D006694 6.3e-38 161.4 180 54.4
TWI23G0649 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 6.3e-38 161.4 189 53.4
Prupe.1G358600 Prunus persica HOM05D005391 ORTHO05D006694 8.2e-38 161.0 182 52.2
vmacro16727 Vaccinium macrocarpon HOM05D005391 ORTHO05D006694 4.1e-37 158.7 175 52.0
RcHm_v2.0_Chr6g0303761 Rosa chinensis HOM05D005391 ORTHO05D006694 6.9e-37 157.9 182 64.8
DCAR_016386 Daucus carota HOM05D005391 ORTHO05D006694 1.2e-36 157.1 180 52.8
FvH4_2g37750 Fragaria vesca HOM05D005391 ORTHO05D006694 1.2e-36 157.1 172 53.5
PGSC0003DMG400026284 Solanum tuberosum HOM05D005391 ORTHO05D006694 1.5e-36 156.8 188 50.0
TAR629G0488 Trochodendron aralioides HOM05D005391 ORTHO05D006694 1.5e-36 156.8 173 53.8
CsaV3_1G000500 Cucumis sativus L. HOM05D005391 ORTHO05D006694 3.4e-36 155.6 188 55.3
MELO3C026202.2 Cucumis melo HOM05D005391 ORTHO05D006694 4.5e-36 155.2 188 55.3
CSS0003205 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 5.9e-36 154.8 174 57.5
CSS0033680 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 5.9e-36 154.8 174 57.5
Ciclev10032864m.g Citrus clementina HOM05D005391 ORTHO05D006694 7.7e-36 154.5 186 52.7
FAN15G0439 Fragaria x ananassa HOM05D005391 ORTHO05D006694 7.7e-36 154.5 172 51.7
PSO478G3696 Papaver somniferum HOM05D005391 ORTHO05D006694 7.7e-36 154.5 178 52.2
TAR371G0831 Trochodendron aralioides HOM05D005391 ORTHO05D006694 7.7e-36 154.5 176 52.8
FAN27G0224 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.0e-35 154.1 172 52.3
PSO017G3900 Papaver somniferum HOM05D005391 ORTHO05D006694 1.3e-35 153.7 178 51.7
Atru.chr6.1808 Acer truncatum HOM05D005391 ORTHO05D006694 2.2e-35 152.9 175 53.1
FAN20G0870 Fragaria x ananassa HOM05D005391 ORTHO05D006694 2.2e-35 152.9 172 52.9
MBI07_g28244_MAGBIO Magnolia biondii HOM05D005391 ORTHO05D006694 2.2e-35 152.9 174 51.7
SGA_v2.0_scaffold169G38603 Striga asiatica HOM05D005391 ORTHO05D006694 2.2e-35 152.9 182 53.8
TWI14G1436 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 2.2e-35 152.9 187 50.8
Ah.03g143420 Amaranthus hybridus HOM05D005391 ORTHO05D006694 3.8e-35 152.1 172 51.7
Nn4g22289 Nelumbo nucifera HOM05D005391 ORTHO05D006694 3.8e-35 152.1 175 52.6
TPR.G14215 Trifolium pratense HOM05D005391 ORTHO05D006694 6.5e-35 151.4 172 56.4
Nitab4.5_0000264g0120 Nicotiana tabacum HOM05D005391 ORTHO05D006694 1.1e-34 150.6 180 54.4
Nn3g16438 Nelumbo nucifera HOM05D005391 ORTHO05D006694 1.4e-34 150.2 175 48.6
Hund08624 Selenicereus undatus HOM05D005391 ORTHO05D006694 1.4e-34 150.2 170 53.5
Sopen08g002620 Solanum pennellii HOM05D005391 ORTHO05D006694 2.5e-34 149.4 188 61.7
Oeu009657.1 Olea europaea HOM05D005391 ORTHO05D006694 3.2e-34 149.1 201 53.2
Medtr3g099130 Medicago truncatula HOM05D005391 ORTHO05D006694 5.5e-34 148.3 175 52.0
Peaxi162Scf00045g01932 Petunia axillaris HOM05D005391 ORTHO05D006694 5.5e-34 148.3 172 50.6
Lj1g0005006 Lotus japonicus HOM05D005391 ORTHO05D006694 7.2e-34 147.9 170 52.4
Solyc08g006670.3 Solanum lycopersicum HOM05D005391 ORTHO05D006694 9.4e-34 147.5 188 61.2
Ca_16053_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 1.2e-33 147.1 175 52.0
Sabra15G0118500 Salix brachista HOM05D005391 ORTHO05D006694 1.2e-33 147.1 194 47.9
CANSAT80G1472 Cannabis sativa HOM05D005391 ORTHO05D006694 1.6e-33 146.7 193 46.1
Cc08_g07550 Coffea canephora HOM05D005391 ORTHO05D006694 1.6e-33 146.7 194 47.4
Rhsim12G0176000 Rhododendron simsii HOM05D005391 ORTHO05D006694 1.6e-33 146.7 178 50.6
CSS0043065 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 2.1e-33 146.4 174 50.6
AUR62002017 Chenopodium quinoa HOM05D005391 ORTHO05D006694 2.7e-33 146.0 175 50.9
Haze_07152 Corylus avellana HOM05D005391 ORTHO05D006694 2.7e-33 146.0 183 63.9
Lalb_Chr23g0273681 Lupinus albus HOM05D005391 ORTHO05D006694 2.7e-33 146.0 172 56.4
Lsat_1_v5_gn_4_81240 Lactuca sativa HOM05D005391 ORTHO05D006694 3.6e-33 145.6 172 50.0
arahy.Tifrunner.gnm1.ann1.S11VKX Arachis hypogaea HOM05D005391 ORTHO05D006694 7.9e-33 144.4 185 62.2
Glyma.06G169200 Glycine max HOM05D005391 ORTHO05D006694 7.9e-33 144.4 172 55.2
Lj5A95T81 Lonicera japonica HOM05D005391 ORTHO05D006694 1.0e-32 144.1 199 50.8
Phvul.009G165600 Phaseolus vulgaris HOM05D005391 ORTHO05D006694 1.4e-32 143.7 172 61.6
Cfa018784 Carpinus fangiana HOM05D005391 ORTHO05D006694 2.3e-32 142.9 183 63.4
AUR62003784 Chenopodium quinoa HOM05D005391 ORTHO05D006694 2.3e-32 142.9 180 46.7
Migut.E01449 Erythranthe guttata HOM05D005391 ORTHO05D006694 2.3e-32 142.9 193 49.2
Psat5g051960 Pisum sativum HOM05D005391 ORTHO05D006694 2.3e-32 142.9 172 49.4
Glyma.04G196600 Glycine max HOM05D005391 ORTHO05D006694 3.0e-32 142.5 172 59.3
FAN26G2573 Fragaria x ananassa HOM05D005391 ORTHO05D006694 5.1e-32 141.7 170 50.0
unitig_32.g10935 Utricularia gibba HOM05D005391 ORTHO05D006694 6.7e-32 141.4 201 55.2
GSVIVG01008565001 Vitis vinifera HOM05D005391 ORTHO05D006694 1.5e-31 140.2 180 50.0
QL10p002677 Quercus lobata HOM05D005391 ORTHO05D006694 2.6e-31 139.4 176 64.2
MSTRG.25825 Avicennia marina HOM05D005391 ORTHO05D006694 4.4e-31 138.7 199 49.2
EL10Ac6g15093 Beta vulgaris HOM05D005391 ORTHO05D006694 4.4e-31 138.7 173 46.2
Aqoxy3G01572 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 5.7e-31 138.3 176 47.7
arahy.Tifrunner.gnm1.ann1.3A01UJ Arachis hypogaea HOM05D005391 ORTHO05D006694 1.3e-30 137.1 193 59.6
CDE10G0912 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 2.2e-30 136.3 172 47.1
CDE04G2377 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 4.8e-30 135.2 171 46.8
ECA232G1626 Erigeron canadensis HOM05D005391 ORTHO05D006694 2.4e-29 132.9 172 45.3
ClCG06G017970 Citrullus lanatus HOM05D005391 ORTHO05D006694 9.1e-29 131.0 237 43.0
Aqoxy3G00618 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 2.0e-28 129.8 177 58.2
ATR0171G017 Amborella trichopoda HOM05D005391 ORTHO05D006694 3.5e-28 129.0 175 44.0
SalBow8G3527 Salvia bowleyana HOM05D005391 ORTHO05D006694 3.5e-28 129.0 192 55.7
arahy.Tifrunner.gnm1.ann1.CP8X4X Arachis hypogaea HOM05D005391 ORTHO05D006694 1.7e-27 126.7 226 51.3
arahy.Tifrunner.gnm1.ann1.HT4698 Arachis hypogaea HOM05D005391 ORTHO05D006694 8.5e-27 124.4 226 50.0
Zm00001eb421130 Zea mays HOM05D005391 ORTHO05D006694 1.6e-25 120.2 170 44.1
SEGI_01116 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 1.5e-23 113.6 170 42.9
Nitab4.5_0001362g0010 Nicotiana tabacum HOM05D005391 ORTHO05D006694 2.8e-22 109.4 174 53.4
Actinidia08882 Actinidia chinensis HOM05D005391 ORTHO05D006694 4.8e-22 108.6 145 48.3
HPP92_023119 Vanilla planifolia HOM05D005391 ORTHO05D006694 4.8e-22 108.6 177 42.4
Ah.07g204620 Amaranthus hybridus HOM05D005391 ORTHO05D006694 1.6e-20 103.6 139 48.2
CSS0010891 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 2.9e-19 99.4 108 54.6
HanXRQChr09g0273301 Helianthus annuus HOM05D005391 ORTHO05D006694 3.8e-19 99.0 150 43.3
FAN23G2258 Fragaria x ananassa HOM05D005391 ORTHO05D006694 6.5e-19 98.2 146 45.9
VMungo1309G0665 Vigna mungo HOM05D005391 ORTHO05D006694 3.2e-18 95.9 108 65.7
Mapoly0007s0225 Marchantia polymorpha HOM05D005391 ORTHO05D006694 4.7e-17 92.0 165 36.4
Oeu040668.1 Olea europaea HOM05D005391 ORTHO05D006694 1.4e-16 90.5 154 41.6
Sc04g0000550 Simmondsia chinensis HOM05D005391 ORTHO05D006694 2.3e-16 89.7 134 47.0
Ca_01190_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 8.8e-16 87.8 86 53.5
DCAR_021623 Daucus carota HOM05D005391 ORTHO05D006694 2.2e-14 83.2 170 32.4
SMO364G0653 Selaginella moellendorffii HOM05D005391 ORTHO05D006694 4.8e-14 82.0 164 30.5
Pp3c7_3280 Physcomitrium patens HOM05D005391 ORTHO05D006694 6.3e-14 81.6 176 32.4
FAN23G0903 Fragaria x ananassa HOM05D005391 ORTHO05D006694 7.0e-13 78.2 168 38.7
Gohir.1Z049409 Gossypium hirsutum HOM05D005391 ORTHO05D006694 3.5e-12 75.9 115 43.5
AagrBONN_evm.TU.Sc2ySwM_369.268 Anthoceros agrestis HOM05D005391 ORTHO05D006694 7.7e-12 74.7 167 35.3
BcaB07g29688 Brassica carinata HOM05D005391 ORTHO05D006694 4.7e-09 65.5 34 88.2
Os04g0388601 Oryza sativa ssp. japonica HOM05D005391 ORTHO05D006694 6.8e-08 61.6 160 40.0
SEGI_13536 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 1.2e-07 60.8 138 32.6
Zm00001eb085410 Zea mays HOM05D005391 ORTHO05D006694 3.4e-07 59.3 104 49.0
CSS0049043 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 3.7e-06 55.8 59 47.5


User provided reference genes

Program Settings