Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09715 Brassica carinata HOM05D005549 ORTHO05D006771 3.0e-177 625.2 340 100.0
BcaC01g02548 Brassica carinata HOM05D005549 ORTHO05D006771 1.5e-163 579.7 340 90.9
C03p63600 Brassica napus HOM05D005549 ORTHO05D006771 1.5e-163 579.7 340 90.9
BolC3t18618H Brassica oleracea HOM05D005549 ORTHO05D006771 1.9e-163 579.3 340 90.9
A06p29790 Brassica napus HOM05D005549 ORTHO05D006771 2.7e-162 575.5 340 91.8
BraA06t25926Z Brassica rapa HOM05D005549 ORTHO05D006771 1.8e-161 572.8 340 89.1
AL8G40040 Arabidopsis lyrata HOM05D005549 ORTHO05D006771 7.5e-152 540.8 343 82.2
Sp2g26140 Schrenkiella parvula HOM05D005549 ORTHO05D006771 3.5e-149 531.9 338 76.6
Thhalv10004522m.g Eutrema salsugineum HOM05D005549 ORTHO05D006771 1.3e-148 530.0 343 75.5
CARHR276820 Cardamine hirsuta HOM05D005549 ORTHO05D006771 1.7e-148 529.6 341 76.2
AT5G63010 Arabidopsis thaliana HOM05D005549 ORTHO05D006771 3.0e-145 518.8 341 76.0
Carub.0008s2372 Capsella rubella HOM05D005549 ORTHO05D006771 8.3e-143 510.8 343 73.2
Aa31LG11G650 Aethionema arabicum HOM05D005549 ORTHO05D006771 6.6e-140 501.1 341 72.4
THA.LOC104818503 Tarenaya hassleriana HOM05D005549 ORTHO05D006771 5.4e-118 428.3 321 71.7
FAN08G3612 Fragaria x ananassa HOM05D005549 ORTHO05D006771 6.2e-114 414.8 348 57.5
Thecc.03G015300 Theobroma cacao HOM05D005549 ORTHO05D006771 6.8e-113 411.4 349 58.2
FvH4_5g05540 Fragaria vesca HOM05D005549 ORTHO05D006771 2.0e-112 409.8 348 56.9
FAN18G0652 Fragaria x ananassa HOM05D005549 ORTHO05D006771 2.0e-112 409.8 348 56.9
Duzib205G0052 Durio zibethinus HOM05D005549 ORTHO05D006771 1.7e-111 406.8 348 57.8
FAN18G1717 Fragaria x ananassa HOM05D005549 ORTHO05D006771 2.2e-111 406.4 348 56.6
vmacro16625 Vaccinium macrocarpon HOM05D005549 ORTHO05D006771 1.9e-110 403.3 360 56.7
QL10p009538 Quercus lobata HOM05D005549 ORTHO05D006771 2.4e-110 402.9 346 56.9
Sabra14G0003300 Salix brachista HOM05D005549 ORTHO05D006771 3.2e-110 402.5 346 57.8
Potri.014G000900 Populus trichocarpa HOM05D005549 ORTHO05D006771 7.1e-110 401.4 346 58.1
COL.COLO4_30080 Corchorus olitorius HOM05D005549 ORTHO05D006771 1.6e-109 400.2 348 62.6
PGR031G3229 Punica granatum HOM05D005549 ORTHO05D006771 2.1e-109 399.8 348 61.8
RcHm_v2.0_Chr7g0193241 Rosa chinensis HOM05D005549 ORTHO05D006771 2.1e-109 399.8 348 56.6
Manes.06G106600 Manihot esculenta HOM05D005549 ORTHO05D006771 2.7e-109 399.4 342 56.1
Peaxi162Scf00075g00159 Petunia axillaris HOM05D005549 ORTHO05D006771 1.3e-108 397.1 348 56.3
Sopen05g007150 Solanum pennellii HOM05D005549 ORTHO05D006771 2.3e-108 396.4 343 55.7
Ciclev10020953m.g Citrus clementina HOM05D005549 ORTHO05D006771 5.1e-108 395.2 343 56.9
Lalb_Chr04g0247841 Lupinus albus HOM05D005549 ORTHO05D006771 5.1e-108 395.2 347 61.1
TWI14G0382 Tripterygium wilfordii HOM05D005549 ORTHO05D006771 8.7e-108 394.4 343 56.6
Atru.chr9.2502 Acer truncatum HOM05D005549 ORTHO05D006771 1.1e-107 394.0 348 56.0
Cc04_g12210 Coffea canephora HOM05D005549 ORTHO05D006771 1.1e-107 394.0 348 56.3
Haze_07531 Corylus avellana HOM05D005549 ORTHO05D006771 1.5e-107 393.7 343 56.3
Prupe.5G171000 Prunus persica HOM05D005549 ORTHO05D006771 1.5e-107 393.7 347 55.6
Rhsim12G0166100 Rhododendron simsii HOM05D005549 ORTHO05D006771 4.3e-107 392.1 360 54.4
PGSC0003DMG400028373 Solanum tuberosum HOM05D005549 ORTHO05D006771 5.6e-107 391.7 343 55.4
Sopen05g007130 Solanum pennellii HOM05D005549 ORTHO05D006771 9.6e-107 391.0 343 54.8
Dinv38568 Davidia involucrata HOM05D005549 ORTHO05D006771 1.3e-106 390.6 348 55.2
CiPaw.11G024000 Carya illinoinensis HOM05D005549 ORTHO05D006771 1.6e-106 390.2 347 55.0
Actinidia19108 Actinidia chinensis HOM05D005549 ORTHO05D006771 6.2e-106 388.3 360 53.6
Ca_06401_v3 Cicer arietinum L. HOM05D005549 ORTHO05D006771 6.2e-106 388.3 349 60.5
Gorai.006G188700 Gossypium raimondii HOM05D005549 ORTHO05D006771 6.2e-106 388.3 344 55.5
LjContig00081g0017630 Lotus japonicus HOM05D005549 ORTHO05D006771 1.1e-105 387.5 349 59.9
Medtr5g096040 Medicago truncatula HOM05D005549 ORTHO05D006771 4.0e-105 385.6 348 58.9
arahy.Tifrunner.gnm1.ann1.386HL4 Arachis hypogaea HOM05D005549 ORTHO05D006771 1.5e-104 383.6 354 58.5
Gohir.A09G171200 Gossypium hirsutum HOM05D005549 ORTHO05D006771 1.5e-104 383.6 344 54.7
MD06G1171600 Malus domestica HOM05D005549 ORTHO05D006771 2.0e-104 383.3 346 54.0
Gohir.D09G166900 Gossypium hirsutum HOM05D005549 ORTHO05D006771 2.6e-104 382.9 344 54.9
Glyma.09G077900 Glycine max HOM05D005549 ORTHO05D006771 1.3e-103 380.6 349 59.9
arahy.Tifrunner.gnm1.ann1.7VTX70 Arachis hypogaea HOM05D005549 ORTHO05D006771 3.8e-103 379.0 354 57.9
ECA232G3151 Erigeron canadensis HOM05D005549 ORTHO05D006771 3.8e-103 379.0 342 62.6
Psat2g007040 Pisum sativum HOM05D005549 ORTHO05D006771 3.8e-103 379.0 349 59.3
Phvul.011G182066 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 4.9e-103 378.6 344 60.8
Eucgr.H00383 Eucalyptus grandis HOM05D005549 ORTHO05D006771 6.4e-103 378.3 351 57.8
Glyma.15G218700 Glycine max HOM05D005549 ORTHO05D006771 6.4e-103 378.3 349 59.6
Peaxi162Scf00141g00210 Petunia axillaris HOM05D005549 ORTHO05D006771 8.4e-103 377.9 342 55.0
ClCG06G017070 Citrullus lanatus HOM05D005549 ORTHO05D006771 1.9e-102 376.7 346 63.6
Nn4g25809 Nelumbo nucifera HOM05D005549 ORTHO05D006771 1.9e-102 376.7 347 53.6
CsaV3_1G001440 Cucumis sativus L. HOM05D005549 ORTHO05D006771 2.4e-102 376.3 347 59.4
TPR.G8611 Trifolium pratense HOM05D005549 ORTHO05D006771 3.2e-102 375.9 349 59.0
Oeu024700.1 Olea europaea HOM05D005549 ORTHO05D006771 5.4e-102 375.2 351 61.5
MSTRG.26261 Avicennia marina HOM05D005549 ORTHO05D006771 1.0e-100 370.9 345 55.1
Lj3C19G0 Lonicera japonica HOM05D005549 ORTHO05D006771 1.7e-100 370.2 348 57.2
Phvul.011G182000 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 2.3e-100 369.8 344 60.5
TAR622G1114 Trochodendron aralioides HOM05D005549 ORTHO05D006771 2.3e-100 369.8 349 52.4
FAN13G1520 Fragaria x ananassa HOM05D005549 ORTHO05D006771 5.1e-100 368.6 346 53.2
Migut.K00304 Erythranthe guttata HOM05D005549 ORTHO05D006771 6.6e-100 368.2 350 53.7
arahy.Tifrunner.gnm1.ann1.BH3JLW Arachis hypogaea HOM05D005549 ORTHO05D006771 8.7e-100 367.9 343 58.3
GSVIVG01007718001 Vitis vinifera HOM05D002875 ORTHO05D003215 8.7e-100 367.9 317 63.7
MELO3C017092.2 Cucumis melo HOM05D005549 ORTHO05D006771 1.1e-99 367.5 346 62.4
Sed0023293 Sechium edule HOM05D005549 ORTHO05D006771 4.3e-99 365.5 348 61.5
SGA_v2.0_scaffold293G47425 Striga asiatica HOM05D005549 ORTHO05D006771 7.3e-99 364.8 340 65.0
Aqoxy3G02864 Aquilegia oxysepala HOM05D005549 ORTHO05D006771 9.6e-99 364.4 341 56.6
MBI16_g05472_MAGBIO Magnolia biondii HOM05D005549 ORTHO05D006771 9.6e-99 364.4 346 52.9
VMungo1127G1558 Vigna mungo HOM05D005549 ORTHO05D006771 2.1e-98 363.2 349 56.7
Ah.02g110600 Amaranthus hybridus HOM05D005549 ORTHO05D006771 2.4e-97 359.8 350 60.3
Sc12g0005230 Simmondsia chinensis HOM05D005549 ORTHO05D006771 2.4e-97 359.8 343 55.1
PSO478G4565 Papaver somniferum HOM05D005549 ORTHO05D006771 3.1e-97 359.4 350 58.9
FAN04G2905 Fragaria x ananassa HOM05D005549 ORTHO05D006771 4.0e-97 359.0 349 51.9
CANSAT25G1426 Cannabis sativa HOM05D005549 ORTHO05D006771 1.5e-96 357.1 348 56.3
Nitab4.5_0002265g0110 Nicotiana tabacum HOM05D005549 ORTHO05D006771 3.4e-96 355.9 340 52.6
Hma1.2p1_0046F.1_g026660 Hydrangea macrophylla HOM05D005549 ORTHO05D006771 5.8e-96 355.1 397 46.9
AUR62008189 Chenopodium quinoa HOM05D005549 ORTHO05D006771 2.2e-95 353.2 348 52.9
SHI17110 Sapria himalayana HOM05D005549 ORTHO05D006771 4.9e-95 352.1 338 53.3
Lsat_1_v5_gn_4_75780 Lactuca sativa HOM05D005549 ORTHO05D006771 1.4e-94 350.5 343 60.1
DCAR_016476 Daucus carota HOM05D005549 ORTHO05D006771 3.2e-94 349.4 353 56.1
Hund09451 Selenicereus undatus HOM05D005549 ORTHO05D006771 2.7e-93 346.3 347 50.1
EL10Ac5g10725 Beta vulgaris HOM05D005549 ORTHO05D006771 3.5e-93 345.9 348 51.1
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 2.3e-92 343.2 336 51.8
unitig_37.g12682 Utricularia gibba HOM05D005549 ORTHO05D006771 1.9e-91 340.1 347 50.7
Os04g0507900 Oryza sativa ssp. japonica HOM05D005549 ORTHO05D006771 9.6e-91 337.8 348 50.6
Zm00001eb426250 Zea mays HOM05D005549 ORTHO05D006771 9.6e-91 337.8 346 49.7
HPP92_021890 Vanilla planifolia HOM05D005549 ORTHO05D006771 4.5e-80 302.4 341 51.9
Eucgr.C01244 Eucalyptus grandis HOM05D005549 ORTHO05D006771 5.8e-80 302.0 340 46.2
HanXRQChr09g0272091 Helianthus annuus HOM05D005549 ORTHO05D006771 2.8e-74 283.1 273 63.0
CDE02G3271 Ceratophyllum demersum HOM05D005549 ORTHO05D006771 9.0e-73 278.1 340 45.9
Pp3c9_15370 Physcomitrium patens HOM05D005549 ORTHO05D006771 2.3e-68 263.5 345 42.6
Cpa.g.c31519.1 Carica papaya HOM05D005549 ORTHO05D006771 3.0e-68 263.1 239 51.5
Mapoly0027s0008 Marchantia polymorpha HOM05D005549 ORTHO05D006771 6.7e-68 261.9 384 37.8
Solyc05g012300.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 2.2e-66 256.9 218 53.7
Solyc05g012320.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 6.3e-66 255.4 218 53.7
arahy.Tifrunner.gnm1.ann1.BVT45G Arachis hypogaea HOM05D005549 ORTHO05D006771 5.3e-65 252.3 222 60.8
Glyma.08G230900 Glycine max HOM05D005549 ORTHO05D006771 5.3e-65 252.3 226 61.9
ECA232G2898 Erigeron canadensis HOM05D005549 ORTHO05D006771 1.3e-63 247.7 223 67.7
arahy.Tifrunner.gnm1.ann1.8228C9 Arachis hypogaea HOM05D005549 ORTHO05D006771 2.5e-62 243.4 212 61.8
arahy.Tifrunner.gnm1.ann1.DCL1V8 Arachis hypogaea HOM05D005549 ORTHO05D006771 2.5e-62 243.4 212 61.8
Potri.012G087300 Populus trichocarpa HOM05D005549 ORTHO05D006771 2.5e-62 243.4 221 53.8
Atru.chr9.2510 Acer truncatum HOM05D005549 ORTHO05D006771 4.4e-59 232.6 209 52.6
SMO367G1205 Selaginella moellendorffii HOM05D005549 ORTHO05D006771 3.1e-57 226.5 345 40.9
AagrBONN_evm.TU.Sc2ySwM_228.3282 Anthoceros agrestis HOM05D005549 ORTHO05D006771 1.0e-55 221.5 377 35.3
AUR62030941 Chenopodium quinoa HOM05D005549 ORTHO05D006771 1.3e-55 221.1 223 51.1
Peaxi162Scf00141g10027 Petunia axillaris HOM05D005549 ORTHO05D006771 1.6e-53 214.2 190 52.6
ATR0807G008 Amborella trichopoda HOM05D005549 ORTHO05D006771 1.8e-52 210.7 221 44.3
CSS0043757 Camellia sinensis var. sinensis HOM05D005549 ORTHO05D006771 1.5e-51 207.6 223 48.0
HanXRQChr04g0107691 Helianthus annuus HOM05D005549 ORTHO05D006771 4.7e-45 186.0 183 68.3
Gorai.001G151900 Gossypium raimondii HOM05D005549 ORTHO05D006771 8.8e-44 181.8 187 49.2
Gohir.D07G139801 Gossypium hirsutum HOM05D005549 ORTHO05D006771 3.7e-42 176.4 187 48.1
MD06G1171300 Malus domestica HOM05D005549 ORTHO05D006771 7.0e-41 172.2 314 36.9
HanXRQChr16g0506951 Helianthus annuus HOM05D005549 ORTHO05D006771 1.2e-40 171.4 192 45.3
MD14G1177100 Malus domestica HOM05D005549 ORTHO05D006771 4.2e-38 162.9 179 46.9
Eucgr.H00387 Eucalyptus grandis HOM05D005549 ORTHO05D006771 1.8e-36 157.5 202 43.1
CBR_g24288 Chara braunii HOM05D005549 ORTHO05D006771 2.3e-36 157.1 514 27.0
Atru.chr9.2511 Acer truncatum HOM05D005549 ORTHO05D006771 2.3e-28 130.6 124 52.4
Cre10.g434300 Chlamydomonas reinhardtii HOM05D005549 ORTHO05D006771 1.2e-24 118.2 255 38.0
MCO16G545 Micromonas commoda HOM05D005549 ORTHO05D006771 5.9e-24 115.9 424 26.7
PRCOL_00001377 Prasinoderma coloniale HOM05D005549 ORTHO05D006771 3.3e-22 110.2 343 27.7
Cpa.g.c31519.2 Carica papaya HOM05D005549 ORTHO05D006771 5.6e-22 109.4 82 64.6
TPR.G8752 Trifolium pratense HOM05D005549 ORTHO05D006771 7.3e-22 109.0 87 55.2
Sabra12G0062500 Salix brachista HOM05D005549 ORTHO05D006771 1.0e-20 105.1 95 55.8
ATR0807G036 Amborella trichopoda HOM05D005549 ORTHO05D006771 4.4e-19 99.8 97 52.6
Gohir.D12G085501 Gossypium hirsutum HOM05D005549 ORTHO05D006771 1.7e-18 97.8 142 39.4
MD14G1177000 Malus domestica HOM05D005549 ORTHO05D006771 5.6e-14 82.8 67 58.2
Lj5C126T17 Lonicera japonica HOM05D005549 ORTHO05D006771 4.4e-11 73.2 97 43.3
Nitab4.5_0003499g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 2.2e-10 70.9 100 44.0
BraA05t20206Z Brassica rapa HOM05D000684 ORTHO05D000688 7.3e-06 55.8 201 21.4


User provided reference genes

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