Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 2.7e-109 398.7 203 100.0
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 3.1e-105 385.2 203 98.0
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 1.2e-104 383.3 203 97.5
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 1.2e-104 383.3 203 97.5
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 1.2e-104 383.3 203 97.5
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 2.7e-104 382.1 203 97.0
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 6.5e-103 377.5 203 97.0
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 2.7e-101 372.1 203 95.1
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 2.7e-101 372.1 203 94.1
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 2.7e-101 372.1 196 98.0
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 5.2e-100 367.9 203 92.6
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 3.7e-98 361.7 203 91.6
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 3.4e-83 312.0 202 80.2
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 7.0e-81 304.3 206 75.2
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 1.2e-80 303.5 204 75.5
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 4.6e-80 301.6 188 81.4
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 4.6e-80 301.6 205 74.6
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 1.0e-79 300.4 204 75.0
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 1.0e-79 300.4 204 75.0
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 1.3e-79 300.1 202 75.7
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 2.3e-79 299.3 204 74.5
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 2.5e-78 295.8 202 75.7
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 4.3e-78 295.0 201 74.6
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 7.3e-78 294.3 205 72.7
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 1.2e-77 293.5 204 74.5
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 1.2e-77 293.5 203 74.9
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 2.8e-77 292.4 206 73.3
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 4.7e-77 291.6 204 72.5
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 6.2e-77 291.2 204 73.0
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 8.1e-77 290.8 202 74.3
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 8.1e-77 290.8 195 74.9
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.4e-76 290.0 203 72.9
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 1.8e-76 289.7 205 74.6
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 2.3e-76 289.3 203 73.9
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 2.3e-76 289.3 203 72.9
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 2.3e-76 289.3 205 73.7
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 3.1e-76 288.9 205 74.1
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 6.8e-76 287.7 203 72.4
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 6.8e-76 287.7 203 72.4
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 8.9e-76 287.3 203 73.4
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 2.0e-75 286.2 204 72.1
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 2.6e-75 285.8 205 70.7
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 2.6e-75 285.8 206 71.4
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 2.6e-75 285.8 204 72.5
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 3.4e-75 285.4 203 71.9
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 5.8e-75 284.6 206 71.8
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 5.8e-75 284.6 196 72.4
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 7.5e-75 284.3 205 71.7
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 7.5e-75 284.3 205 70.7
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 1.3e-74 283.5 190 77.4
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 1.3e-74 283.5 203 71.9
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 2.2e-74 282.7 194 73.2
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 2.2e-74 282.7 204 70.6
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 3.7e-74 282.0 187 76.5
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 3.7e-74 282.0 202 72.8
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 6.4e-74 281.2 200 73.0
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 6.4e-74 281.2 206 69.9
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 1.1e-73 280.4 185 76.2
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 1.4e-73 280.0 207 71.5
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 1.4e-73 280.0 205 71.7
Psat4g058400 Pisum sativum HOM05D000922 ORTHO05D008200 2.4e-73 279.3 204 71.1
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 3.2e-73 278.9 200 73.0
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 4.1e-73 278.5 220 67.3
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 4.1e-73 278.5 205 71.2
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 5.4e-73 278.1 204 70.1
Lalb_Chr12g0201661 Lupinus albus HOM05D000922 ORTHO05D008200 7.1e-73 277.7 197 72.6
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 9.2e-73 277.3 206 68.4
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 9.2e-73 277.3 201 70.1
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 9.2e-73 277.3 202 69.3
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 9.2e-73 277.3 202 69.3
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 1.2e-72 276.9 196 72.4
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 2.1e-72 276.2 185 75.7
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 3.5e-72 275.4 206 68.0
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 4.6e-72 275.0 196 70.9
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 6.0e-72 274.6 204 68.6
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 2.3e-71 272.7 205 70.2
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 6.6e-71 271.2 198 71.2
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 6.6e-71 271.2 206 70.4
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 8.6e-71 270.8 205 68.8
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 8.6e-71 270.8 173 77.5
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 1.5e-70 270.0 189 73.0
Medtr4g105570 Medicago truncatula HOM05D000922 ORTHO05D008200 1.5e-70 270.0 203 68.0
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 4.3e-70 268.5 224 65.2
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 4.3e-70 268.5 202 66.3
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 5.6e-70 268.1 189 72.5
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 1.1e-68 263.8 195 67.7
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.8e-68 263.1 204 69.6
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 2.3e-68 262.7 203 69.5
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 5.2e-68 261.5 197 69.5
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 6.8e-68 261.2 205 66.8
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 4.4e-67 258.5 233 60.5
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 4.4e-67 258.5 201 68.2
PSO832G1073 Papaver somniferum HOM05D000922 ORTHO05D008200 7.6e-67 257.7 205 65.4
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 4.9e-66 255.0 225 63.1
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 8.4e-66 254.2 175 74.3
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 5.6e-62 241.5 314 47.1
arahy.Tifrunner.gnm1.ann1.HJA5XH Arachis hypogaea HOM05D000922 ORTHO05D008200 4.7e-61 238.4 240 55.8
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 8.1e-61 237.7 161 77.0
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 5.2e-60 235.0 205 60.5
HanXRQChr05g0155781 Helianthus annuus HOM05D000922 ORTHO05D008200 5.4e-57 224.9 161 71.4
ATR1091G108 Amborella trichopoda HOM05D000922 ORTHO05D008200 6.2e-53 211.5 155 69.7
Manes.05G195400 Manihot esculenta HOM05D000922 ORTHO05D008200 3.2e-49 199.1 133 74.4
arahy.Tifrunner.gnm1.ann1.UWQ2W3 Arachis hypogaea HOM05D000922 ORTHO05D008200 4.3e-46 188.7 134 70.9
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 1.3e-45 187.2 116 80.2
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 3.6e-45 185.7 118 78.0
TPR.G37467 Trifolium pratense HOM05D000922 ORTHO05D008200 8.1e-45 184.5 134 70.1
TAR371G0469 Trochodendron aralioides HOM05D000922 ORTHO05D008200 3.1e-44 182.6 133 68.4
SEGI_40590 Sequoiadendron giganteum HOM05D000922 ORTHO05D008200 2.9e-42 176.0 152 60.5
Oeu023435.1 Olea europaea HOM05D000922 ORTHO05D008200 1.2e-40 170.6 106 77.4
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 1.0e-39 167.5 118 70.3
Glyma.05G038900 Glycine max HOM05D000922 ORTHO05D008200 6.7e-39 164.9 108 75.0
Mapoly0191s0008 Marchantia polymorpha HOM05D000922 ORTHO05D008200 3.5e-32 142.5 185 45.4
AagrBONN_evm.TU.Sc2ySwM_228.4800 Anthoceros agrestis HOM05D000922 ORTHO05D008200 6.0e-32 141.7 178 42.7
Peaxi162Scf00089g01839 Petunia axillaris HOM05D000922 ORTHO05D008200 1.0e-31 141.0 190 50.0
arahy.Tifrunner.gnm1.ann1.Q2CJ89 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.8e-31 140.2 147 53.7
TPR.G11031 Trifolium pratense HOM05D000922 ORTHO05D008200 1.4e-25 120.6 92 68.5
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 1.8e-23 113.6 210 38.1
SMO111G0048 Selaginella moellendorffii HOM05D000922 ORTHO05D008200 1.8e-23 113.6 138 46.4
arahy.Tifrunner.gnm1.ann1.JAVP2G Arachis hypogaea HOM05D000922 ORTHO05D008200 3.0e-23 112.8 134 48.5
Pp3c17_17380 Physcomitrium patens HOM05D000922 ORTHO05D008200 5.1e-23 112.1 210 36.7
CBR_g38960 Chara braunii HOM05D000922 ORTHO05D008200 1.2e-19 100.9 226 31.9
MCO04G383 Micromonas commoda HOM05D000922 ORTHO05D008200 1.7e-10 70.5 167 32.3
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 1.9e-09 67.0 48 68.8
Medtr4g105580 Medicago truncatula HOM05D000922 ORTHO05D008200 7.9e-08 61.6 71 45.1
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 3.9e-07 59.3 35 80.0
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 5.1e-07 58.9 55 60.0


User provided reference genes

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