Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 6.7e-69 263.8 129 100.0
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.5e-57 226.1 129 86.0
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 4.5e-57 224.6 129 84.5
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 9.4e-55 216.9 124 84.7
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.2e-54 216.5 129 83.7
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 4.8e-51 204.5 122 82.8
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 2.6e-49 198.7 128 75.8
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 2.6e-49 198.7 128 75.8
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 2.6e-49 198.7 128 75.8
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 5.0e-48 194.5 125 77.6
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 1.1e-47 193.4 131 72.5
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 3.2e-47 191.8 123 74.0
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 3.2e-47 191.8 128 71.1
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 4.2e-47 191.4 128 71.1
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 4.2e-47 191.4 128 71.1
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 7.2e-47 190.7 122 76.2
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 9.4e-47 190.3 125 72.8
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 1.2e-46 189.9 120 73.3
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 1.6e-46 189.5 128 70.3
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 8.0e-46 187.2 122 72.1
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 8.0e-46 187.2 119 76.5
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 4.0e-45 184.9 120 74.2
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.0e-44 182.6 121 72.7
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 4.8e-43 177.9 123 69.1
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 4.8e-43 177.9 123 69.1
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 2.9e-40 168.7 121 67.8
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.9e-40 168.7 121 67.8
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.9e-40 168.7 121 67.8
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.8e-40 168.3 120 68.3
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.2e-39 164.9 121 66.1
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 4.2e-39 164.9 129 65.1
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 7.2e-39 164.1 123 65.9
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 7.2e-39 164.1 121 66.1
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 9.4e-39 163.7 129 65.1
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 6.1e-38 161.0 129 62.8
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 1.0e-37 160.2 129 61.2
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.4e-37 159.8 120 65.0
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 1.4e-37 159.8 128 60.2
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 3.0e-37 158.7 124 61.3
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.0e-37 158.7 120 64.2
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 3.0e-37 158.7 127 60.6
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 3.0e-37 158.7 128 62.5
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 6.8e-37 157.5 122 61.5
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 8.8e-37 157.1 123 61.8
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 8.8e-37 157.1 128 60.9
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 8.8e-37 157.1 129 62.0
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 8.8e-37 157.1 121 62.0
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 1.2e-36 156.8 123 62.6
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.2e-36 156.8 120 64.2
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 1.5e-36 156.4 123 61.8
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 1.5e-36 156.4 125 60.8
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 1.5e-36 156.4 121 62.0
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 2.0e-36 156.0 120 62.5
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 2.6e-36 155.6 128 59.4
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 2.6e-36 155.6 123 61.8
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 3.4e-36 155.2 123 62.6
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 3.4e-36 155.2 120 65.0
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 3.4e-36 155.2 120 64.2
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 3.4e-36 155.2 122 63.9
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 4.4e-36 154.8 118 62.7
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 4.4e-36 154.8 120 62.5
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 4.4e-36 154.8 121 61.2
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 4.4e-36 154.8 119 63.0
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 5.7e-36 154.5 122 63.9
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 5.7e-36 154.5 120 60.8
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 5.7e-36 154.5 121 62.0
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 9.8e-36 153.7 130 59.2
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 9.8e-36 153.7 120 63.3
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 9.8e-36 153.7 121 61.2
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 9.8e-36 153.7 123 61.0
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 1.3e-35 153.3 121 61.2
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.7e-35 152.9 128 58.6
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 1.7e-35 152.9 121 62.0
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 1.7e-35 152.9 121 62.0
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 2.2e-35 152.5 120 63.3
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.2e-35 152.5 122 59.0
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 2.2e-35 152.5 130 60.8
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.2e-35 152.5 119 63.9
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 2.8e-35 152.1 120 61.7
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 2.8e-35 152.1 122 61.5
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.8e-35 152.1 120 61.7
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 2.8e-35 152.1 122 61.5
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 2.8e-35 152.1 121 59.5
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 2.8e-35 152.1 128 57.0
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 3.7e-35 151.8 122 60.7
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 3.7e-35 151.8 124 58.1
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 3.7e-35 151.8 121 61.2
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 3.7e-35 151.8 121 61.2
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 4.8e-35 151.4 120 63.3
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 4.8e-35 151.4 122 60.7
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 8.3e-35 150.6 120 63.3
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 8.3e-35 150.6 128 59.4
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 8.3e-35 150.6 131 58.8
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 8.3e-35 150.6 120 60.8
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 8.3e-35 150.6 122 60.7
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.1e-34 150.2 125 56.8
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.1e-34 150.2 118 59.3
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 1.1e-34 150.2 120 63.3
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 1.1e-34 150.2 122 59.8
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 1.8e-34 149.4 124 61.3
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.8e-34 149.4 120 60.0
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 1.8e-34 149.4 120 62.5
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 2.4e-34 149.1 120 61.7
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.4e-34 149.1 121 60.3
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.4e-34 149.1 121 60.3
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 2.4e-34 149.1 121 59.5
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 3.1e-34 148.7 130 59.2
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 4.1e-34 148.3 122 59.8
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 4.1e-34 148.3 123 57.7
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 5.4e-34 147.9 122 59.8
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 7.0e-34 147.5 120 57.5
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 7.0e-34 147.5 121 61.2
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 1.2e-33 146.7 118 61.0
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 1.2e-33 146.7 119 62.2
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.6e-33 146.4 122 59.8
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.6e-33 146.4 130 58.5
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 2.0e-33 146.0 122 55.7
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 2.7e-33 145.6 120 58.3
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 2.7e-33 145.6 121 59.5
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 2.7e-33 145.6 130 57.7
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 4.5e-33 144.8 120 58.3
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 5.9e-33 144.4 122 56.6
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 5.9e-33 144.4 122 59.8
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 7.7e-33 144.1 126 57.1
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.0e-32 143.7 119 58.8
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 1.3e-32 143.3 121 57.0
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 1.3e-32 143.3 121 56.2
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 1.3e-32 143.3 130 56.9
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.3e-32 143.3 120 56.7
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 1.7e-32 142.9 121 55.4
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 2.9e-32 142.1 119 58.0
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 5.0e-32 141.4 120 55.0
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.5e-31 139.8 120 55.8
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 3.2e-31 138.7 126 55.6
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 7.2e-31 137.5 138 52.2
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.6e-30 136.3 122 53.3
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 2.8e-30 135.6 120 55.8
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 2.8e-30 135.6 125 53.6
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 1.0e-29 133.7 121 54.5
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 1.4e-29 133.3 121 54.5
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.8e-29 132.9 104 60.6
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.0e-29 132.1 97 60.8
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 6.8e-29 131.0 102 61.8
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 1.2e-28 130.2 118 55.9
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.5e-28 129.8 106 57.5
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 1.5e-28 129.8 111 57.7
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 4.4e-28 128.3 130 56.2
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 4.4e-28 128.3 121 52.1
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 2.2e-27 125.9 121 52.9
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 4.9e-27 124.8 125 49.6
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 4.9e-27 124.8 118 53.4
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 6.3e-27 124.4 123 52.8
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.2e-25 120.2 93 60.2
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.2e-25 120.2 109 56.0
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 5.9e-25 117.9 111 55.9
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 1.0e-24 117.1 122 50.0
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 2.9e-24 115.5 133 48.9
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 7.5e-20 100.9 80 63.8
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.9e-16 88.6 57 64.9
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.5e-15 86.7 67 64.2
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 7.3e-15 84.3 59 61.0
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 4.7e-14 81.6 57 63.2
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 8.0e-14 80.9 54 66.7
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 1.4e-13 80.1 112 35.7
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 6.8e-13 77.8 119 37.8
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 5.8e-12 74.7 65 56.9
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.2e-11 72.8 54 61.1
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 6.4e-11 71.2 65 53.8
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.1e-10 70.5 62 54.8
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.4e-10 69.3 82 51.2
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 6.0e-09 64.7 61 55.7
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 6.0e-09 64.7 61 55.7
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 1.3e-08 63.5 64 54.7
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 3.0e-08 62.4 64 53.1
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 6.6e-08 61.2 64 48.4
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 9.5e-07 57.4 61 50.8


User provided reference genes

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