Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09696 Brassica carinata HOM05D006935 ORTHO05D008944 6.2e-163 577.4 292 100.0
A06p29590 Brassica napus HOM05D006935 ORTHO05D008944 7.1e-159 563.9 290 96.9
BraA06t25905Z Brassica rapa HOM05D006935 ORTHO05D008944 4.6e-158 561.2 290 96.9
BcaC01g02525 Brassica carinata HOM05D006935 ORTHO05D008944 9.6e-156 553.5 290 95.2
C03p63900 Brassica napus HOM05D006935 ORTHO05D008944 9.6e-156 553.5 290 95.2
BolC3t18645H Brassica oleracea HOM05D006935 ORTHO05D008944 9.6e-156 553.5 290 95.2
Sp2g25990 Schrenkiella parvula HOM05D006935 ORTHO05D008944 1.1e-151 540.0 295 92.9
AT5G62840 Arabidopsis thaliana HOM05D006935 ORTHO05D008944 9.6e-148 526.9 298 90.6
AL8G39840 Arabidopsis lyrata HOM05D006935 ORTHO05D008944 1.6e-147 526.2 296 90.9
CARHR276620 Cardamine hirsuta HOM05D006935 ORTHO05D008944 1.8e-146 522.7 294 90.8
Thhalv10004703m.g Eutrema salsugineum HOM05D006935 ORTHO05D008944 3.4e-145 518.5 295 90.5
Carub.0008s2355 Capsella rubella HOM05D006935 ORTHO05D008944 6.4e-144 514.2 297 89.6
Aa31LG11G860 Aethionema arabicum HOM05D006935 ORTHO05D008944 5.6e-140 501.1 297 85.5
THA.LOC104798977 Tarenaya hassleriana HOM05D006935 ORTHO05D008944 2.2e-128 462.6 292 81.2
Cpa.g.sc124.48 Carica papaya HOM05D006935 ORTHO05D008944 1.4e-117 426.8 292 75.0
Gorai.007G001900 Gossypium raimondii HOM05D006935 ORTHO05D008944 1.7e-115 419.9 292 72.6
CSS0041391 Camellia sinensis var. sinensis HOM05D006935 ORTHO05D008944 2.2e-115 419.5 292 71.6
Atru.chr9.2451 Acer truncatum HOM05D006935 ORTHO05D008944 3.7e-115 418.7 291 73.5
Gohir.D11G001000 Gossypium hirsutum HOM05D006935 ORTHO05D008944 3.7e-115 418.7 291 72.2
Thecc.03G010500 Theobroma cacao HOM05D006935 ORTHO05D008944 8.2e-115 417.5 292 71.9
Gohir.A11G001400 Gossypium hirsutum HOM05D006935 ORTHO05D008944 4.1e-114 415.2 291 71.5
Eucgr.B00368 Eucalyptus grandis HOM05D006935 ORTHO05D008944 1.5e-113 413.3 296 73.3
Ciclev10021410m.g Citrus clementina HOM05D006935 ORTHO05D008944 2.6e-113 412.5 281 74.4
Haze_07457 Corylus avellana HOM05D006935 ORTHO05D008944 2.6e-113 412.5 304 69.4
MD14G1182500 Malus domestica HOM05D006935 ORTHO05D008944 2.6e-113 412.5 271 75.6
Actinidia19311 Actinidia chinensis HOM05D006935 ORTHO05D008944 3.4e-113 412.1 278 73.4
Rhsim08G0171100 Rhododendron simsii HOM05D006935 ORTHO05D008944 4.5e-113 411.8 297 70.0
Sabra15G0098700 Salix brachista HOM05D006935 ORTHO05D008944 4.5e-113 411.8 293 71.7
Duzib068G1137 Durio zibethinus HOM05D006935 ORTHO05D008944 5.9e-113 411.4 303 71.0
Cc04_g13740 Coffea canephora HOM05D006935 ORTHO05D008944 7.7e-113 411.0 316 70.3
PGR083G2867 Punica granatum HOM05D006935 ORTHO05D008944 2.9e-112 409.1 293 72.0
CiPaw.11G027700 Carya illinoinensis HOM05D006935 ORTHO05D008944 3.8e-112 408.7 287 72.5
Potri.015G074700 Populus trichocarpa HOM05D006935 ORTHO05D008944 3.8e-112 408.7 264 75.8
Sopen03g033350 Solanum pennellii HOM05D006935 ORTHO05D008944 3.8e-112 408.7 259 76.4
MSTRG.11442 Avicennia marina HOM05D006935 ORTHO05D008944 5.0e-112 408.3 315 67.6
Manes.06G104000 Manihot esculenta HOM05D006935 ORTHO05D008944 6.5e-112 407.9 265 75.5
vmacro19376 Vaccinium macrocarpon HOM05D006935 ORTHO05D008944 6.5e-112 407.9 294 69.7
QL10p011920 Quercus lobata HOM05D006935 ORTHO05D008944 2.5e-111 406.0 294 71.1
SalBow5G1860 Salvia bowleyana HOM05D006935 ORTHO05D008944 2.5e-111 406.0 299 71.6
COL.COLO4_04599 Corchorus olitorius HOM05D006935 ORTHO05D008944 3.2e-111 405.6 288 72.6
SGA_v2.0_scaffold90G27953 Striga asiatica HOM05D006935 ORTHO05D008944 5.5e-111 404.8 281 72.6
TWI81G0925 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 7.2e-111 404.4 264 75.8
TWI81G0947 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 7.2e-111 404.4 264 75.8
RcHm_v2.0_Chr7g0193711 Rosa chinensis HOM05D006935 ORTHO05D008944 9.4e-111 404.1 293 71.3
Migut.I00022 Erythranthe guttata HOM05D006935 ORTHO05D008944 1.2e-110 403.7 246 78.0
GSVIVG01007766001 Vitis vinifera HOM05D006935 ORTHO05D008944 1.2e-110 403.7 299 70.2
Solyc03g114250.4 Solanum lycopersicum HOM05D006935 ORTHO05D008944 6.1e-110 401.4 262 76.0
FvH4_5g05200 Fragaria vesca HOM05D006935 ORTHO05D008944 7.9e-110 401.0 299 70.2
Nn4g22789 Nelumbo nucifera HOM05D006935 ORTHO05D008944 7.9e-110 401.0 300 71.0
PGSC0003DMG400024494 Solanum tuberosum HOM05D006935 ORTHO05D008944 1.4e-109 400.2 293 70.3
Lsat_1_v5_gn_5_17180 Lactuca sativa HOM05D006935 ORTHO05D008944 2.6e-108 396.0 234 81.2
CsaV3_1G008420 Cucumis sativus L. HOM05D006935 ORTHO05D008944 7.4e-108 394.4 298 67.8
HanXRQChr16g0517271 Helianthus annuus HOM05D006935 ORTHO05D008944 7.4e-108 394.4 299 68.2
Lalb_Chr07g0182691 Lupinus albus HOM05D006935 ORTHO05D008944 1.3e-107 393.7 293 67.6
CANSAT80G0279 Cannabis sativa HOM05D006935 ORTHO05D008944 1.7e-107 393.3 236 80.1
ECA236G1157 Erigeron canadensis HOM05D006935 ORTHO05D008944 6.3e-107 391.3 234 79.9
Sc12g0005390 Simmondsia chinensis HOM05D006935 ORTHO05D008944 5.3e-106 388.3 299 67.2
Aqoxy3G02966 Aquilegia oxysepala HOM05D006935 ORTHO05D008944 9.1e-106 387.5 242 77.7
Cfa019105 Carpinus fangiana HOM05D006935 ORTHO05D004872 1.2e-105 387.1 293 68.3
TAR622G0425 Trochodendron aralioides HOM05D006935 ORTHO05D008944 7.7e-105 384.4 230 80.0
VMungo1215G2532 Vigna mungo HOM05D006935 ORTHO05D008944 7.7e-105 384.4 249 76.7
TPR.G37522 Trifolium pratense HOM05D006935 ORTHO05D008944 1.3e-104 383.6 302 67.2
Glyma.05G036900 Glycine max HOM05D006935 ORTHO05D008944 2.9e-104 382.5 285 68.8
Nitab4.5_0005862g0020 Nicotiana tabacum HOM05D006935 ORTHO05D008944 2.9e-104 382.5 335 61.5
Ah.02g110460 Amaranthus hybridus HOM05D006935 ORTHO05D008944 6.5e-104 381.3 234 77.8
FAN04G2667 Fragaria x ananassa HOM05D006935 ORTHO05D008944 8.5e-104 380.9 253 75.9
ClCG01G013080 Citrullus lanatus HOM05D006935 ORTHO05D008944 1.1e-103 380.6 288 69.4
MBI16_g32800_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 3.2e-103 379.0 297 67.0
Phvul.003G199600 Phaseolus vulgaris HOM05D006935 ORTHO05D008944 4.2e-103 378.6 285 68.1
FAN18G4193 Fragaria x ananassa HOM05D006935 ORTHO05D004872 1.2e-102 377.1 254 74.4
Lj4g0026943 Lotus japonicus HOM05D006935 ORTHO05D008944 1.2e-102 377.1 289 67.1
MBI16_g05651_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 2.1e-102 376.3 228 78.5
Medtr4g106970 Medicago truncatula HOM05D006935 ORTHO05D008944 2.7e-102 375.9 291 66.7
MELO3C002259.2 Cucumis melo HOM05D006935 ORTHO05D008944 3.6e-102 375.6 276 70.7
Hund09430 Selenicereus undatus HOM05D006935 ORTHO05D004872 1.0e-101 374.0 275 68.4
Nitab4.5_0000852g0050 Nicotiana tabacum HOM05D006935 ORTHO05D008944 1.4e-101 373.6 295 67.1
unitig_749.g13472 Utricularia gibba HOM05D006935 ORTHO05D008944 1.8e-101 373.2 266 70.3
PSO302G0172 Papaver somniferum HOM05D006935 ORTHO05D008944 4.4e-100 368.6 294 64.6
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 1.3e-99 367.1 238 75.2
EL10Ac5g10748 Beta vulgaris HOM05D006935 ORTHO05D008944 2.8e-99 365.9 228 76.3
AUR62008221 Chenopodium quinoa HOM05D006935 ORTHO05D008944 3.7e-99 365.5 239 75.7
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 5.3e-98 361.7 289 64.0
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 2.0e-97 359.8 291 66.0
Dinv09149 Davidia involucrata HOM05D006935 ORTHO05D008944 5.0e-96 355.1 268 69.8
Peaxi162Scf00017g02821 Petunia axillaris HOM05D006935 ORTHO05D008944 1.2e-94 350.5 262 69.5
SEGI_12501 Sequoiadendron giganteum HOM05D006935 ORTHO05D008944 1.2e-94 350.5 236 70.8
CAN.G781.17 Capsicum annuum HOM05D006935 ORTHO05D008944 6.1e-94 348.2 261 69.7
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 5.2e-93 345.1 227 74.4
Oeu016368.1 Olea europaea HOM05D006935 ORTHO05D008944 2.0e-92 343.2 305 64.3
AUR62030975 Chenopodium quinoa HOM05D006935 ORTHO05D008944 1.7e-91 340.1 232 72.4
Pp3c16_7000 Physcomitrium patens HOM05D006935 ORTHO05D008944 1.8e-90 336.7 237 68.8
Psat4g057680 Pisum sativum HOM05D006935 ORTHO05D008944 6.1e-86 321.6 196 79.6
Ca_21910_v3 Cicer arietinum L. HOM05D006935 ORTHO05D008944 8.0e-86 321.2 247 66.4
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 2.6e-84 316.2 241 64.7
Peaxi162Scf00017g02830 Petunia axillaris HOM05D006935 ORTHO05D008944 6.1e-78 295.0 209 72.2
FAN08G3443 Fragaria x ananassa HOM05D006935 ORTHO05D004872 8.0e-78 294.7 195 75.9
SMO141G0200 Selaginella moellendorffii HOM05D006935 ORTHO05D008944 9.2e-74 281.2 182 73.6
ATR0730G238 Amborella trichopoda HOM05D006935 ORTHO05D008944 1.2e-73 280.8 253 58.5
AagrBONN_evm.TU.Sc2ySwM_117.38 Anthoceros agrestis HOM05D006935 ORTHO05D008944 1.6e-73 280.4 193 71.5
EL10Ac5g10761 Beta vulgaris HOM05D006935 ORTHO05D008944 5.8e-68 261.9 219 63.0
Prupe.5G175000 Prunus persica HOM05D006935 ORTHO05D008944 1.7e-59 233.8 143 78.3
Cre06.g272300 Chlamydomonas reinhardtii HOM05D006935 ORTHO05D008944 2.7e-57 226.5 283 48.4
Hma1.2p1_0176F.1_g077560 Hydrangea macrophylla HOM05D006935 ORTHO05D008944 4.6e-57 225.7 197 61.4
Sed0005822 Sechium edule HOM05D006935 ORTHO05D008944 6.2e-54 215.3 192 59.9
Actinidia20183 Actinidia chinensis HOM05D006935 ORTHO05D008944 4.7e-46 189.1 117 78.6
arahy.Tifrunner.gnm1.ann1.0F4FSZ Arachis hypogaea HOM05D006935 ORTHO05D008944 4.4e-44 182.6 113 76.1
arahy.Tifrunner.gnm1.ann1.209TGD Arachis hypogaea HOM05D006935 ORTHO05D008944 5.8e-44 182.2 115 74.8
Psat4g057640 Pisum sativum HOM05D006935 ORTHO05D008944 7.1e-42 175.3 238 42.9
Lj5C123T7 Lonicera japonica HOM05D006935 ORTHO05D008944 8.7e-40 168.3 103 73.8
MD06G1175700 Malus domestica HOM05D006935 ORTHO05D008944 6.7e-32 142.1 221 39.8
Lj5C123T8 Lonicera japonica HOM05D006935 ORTHO05D008944 3.4e-28 129.8 75 77.3
PRCOL_00001554 Prasinoderma coloniale HOM05D006935 ORTHO05D008944 1.9e-23 114.0 231 36.4
Actinidia01759 Actinidia chinensis HOM05D006935 ORTHO05D008944 1.0e-16 91.7 63 73.0
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 3.0e-16 90.1 229 32.3
Hund09427 Selenicereus undatus HOM05D006935 ORTHO05D008944 1.0e-08 65.1 59 52.5
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 3.0e-08 63.5 207 29.5
Nn4g24775 Nelumbo nucifera HOM05D006935 ORTHO05D008944 1.9e-07 60.8 33 72.7


User provided reference genes

Program Settings