Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 2.3e-266 921.8 508 100.0
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 1.4e-239 832.8 519 86.9
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 2.4e-239 832.0 519 86.7
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 4.6e-238 827.8 521 86.6
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 1.5e-236 822.8 521 87.7
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 1.9e-236 822.4 485 90.7
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 4.3e-236 821.2 487 89.3
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 9.2e-231 803.5 517 83.4
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 7.9e-214 747.3 489 83.2
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 8.7e-213 743.8 489 82.2
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 1.5e-212 743.0 489 82.2
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 4.3e-212 741.5 484 82.2
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 5.6e-212 741.1 489 82.0
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 6.2e-211 737.6 489 81.8
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 2.2e-208 729.2 480 81.7
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 4.9e-208 728.0 487 81.3
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 1.6e-203 713.0 495 78.8
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 2.9e-184 649.0 489 73.2
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 8.6e-144 514.6 484 62.0
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 1.4e-138 497.3 498 59.4
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 7.3e-119 431.8 516 51.6
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 3.8e-115 419.5 505 51.5
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 8.4e-115 418.3 518 50.0
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 1.1e-114 417.9 518 50.0
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.4e-114 415.6 518 49.8
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 9.3e-114 414.8 514 51.2
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 1.6e-113 414.1 520 51.9
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 2.1e-113 413.7 510 50.0
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 1.0e-112 411.4 500 51.6
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 5.1e-112 409.1 494 51.6
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 1.5e-111 407.5 519 50.7
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 3.3e-111 406.4 518 48.5
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 1.1e-109 401.4 515 48.5
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 1.5e-108 397.5 520 48.8
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 2.0e-108 397.1 510 50.6
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 4.4e-108 396.0 501 51.5
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 7.6e-108 395.2 501 49.3
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 4.9e-107 392.5 516 50.2
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 8.4e-107 391.7 501 49.7
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 8.4e-107 391.7 499 49.1
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.4e-106 391.0 518 47.7
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 5.4e-106 389.0 517 49.1
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 9.3e-106 388.3 504 50.0
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.2e-105 387.9 486 50.4
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 2.7e-105 386.7 487 49.9
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 3.5e-105 386.3 536 48.5
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 3.5e-105 386.3 493 49.9
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 4.6e-105 386.0 487 50.3
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 7.8e-105 385.2 519 47.2
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.0e-104 384.8 498 49.8
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 1.3e-104 384.4 498 49.6
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 1.7e-104 384.0 510 49.2
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.7e-104 384.0 518 47.1
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.3e-104 383.6 519 47.0
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 3.9e-104 382.9 498 49.4
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 1.9e-103 380.6 504 48.6
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 1.9e-103 380.6 517 48.0
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.3e-103 379.4 519 46.6
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 9.6e-103 378.3 517 48.5
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 1.6e-102 377.5 487 49.3
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 4.8e-102 375.9 509 47.7
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 3.1e-101 373.2 487 49.9
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 2.6e-100 370.2 494 49.2
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 3.4e-100 369.8 507 46.7
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 5.8e-100 369.0 481 48.2
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 5.8e-100 369.0 455 51.0
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 7.6e-100 368.6 479 49.7
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 7.6e-100 368.6 510 49.0
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 9.9e-100 368.2 539 46.4
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.3e-99 367.9 512 47.7
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.4e-98 364.4 515 45.2
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 1.4e-98 364.4 512 47.5
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.4e-98 364.4 505 47.1
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 1.9e-98 364.0 494 47.4
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 2.4e-98 363.6 505 47.5
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 4.2e-98 362.8 492 48.6
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 1.6e-97 360.9 494 48.0
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 2.7e-97 360.1 506 47.4
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.0e-96 358.2 476 47.7
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 3.9e-96 356.3 478 48.5
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 8.7e-96 355.1 506 45.8
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 8.7e-96 355.1 503 47.3
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 1.1e-93 348.2 495 47.5
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 4.0e-93 346.3 465 47.7
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 5.3e-93 345.9 516 45.3
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 6.9e-93 345.5 356 55.9
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 6.9e-93 345.5 526 45.6
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 7.6e-92 342.0 494 46.2
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 1.3e-91 341.3 520 43.3
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 1.4e-90 337.8 497 46.7
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 9.3e-90 335.1 601 42.3
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 2.1e-89 334.0 500 45.0
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 3.0e-88 330.1 525 42.9
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 3.9e-88 329.7 497 45.1
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.9e-88 329.7 506 44.3
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 5.1e-88 329.3 489 47.0
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 6.7e-88 328.9 516 45.0
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 8.7e-88 328.6 495 46.7
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.1e-87 328.2 521 44.0
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 1.9e-87 327.4 475 45.1
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 3.3e-87 326.6 525 44.6
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 4.3e-87 326.2 532 43.6
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 7.4e-87 325.5 501 44.1
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 1.3e-86 324.7 355 52.4
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 3.1e-85 320.1 480 44.8
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 4.0e-85 319.7 488 44.5
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 1.5e-84 317.8 486 44.9
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 2.2e-83 313.9 528 41.3
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 8.4e-83 312.0 502 44.6
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 3.2e-82 310.1 496 41.9
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 2.7e-81 307.0 345 51.3
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 4.6e-81 306.2 487 45.0
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.0e-80 303.5 502 42.4
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 1.1e-79 301.6 490 45.1
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 7.4e-79 298.9 449 45.9
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.6e-78 297.7 499 43.5
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 2.8e-78 297.0 496 45.0
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 6.3e-78 295.8 505 43.0
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 6.9e-77 292.4 456 43.6
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 1.2e-76 291.6 470 42.1
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 1.3e-75 288.1 480 43.8
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 2.2e-75 287.3 344 50.9
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 5.0e-75 286.2 391 47.1
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 3.2e-74 283.5 489 41.1
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 1.6e-73 281.2 521 41.3
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 6.1e-73 279.3 449 43.9
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 2.0e-71 274.2 418 44.5
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 8.2e-70 268.9 512 40.8
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 4.1e-69 266.5 483 42.9
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 1.5e-68 264.6 468 40.4
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 5.9e-68 262.7 479 40.5
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.9e-66 257.7 486 38.5
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 7.9e-65 252.3 502 37.5
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 3.9e-64 250.0 351 47.3
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 2.6e-63 247.3 439 39.2
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 7.0e-61 239.2 368 41.0
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 4.4e-55 219.9 384 41.1
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 2.2e-54 217.6 279 49.1
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 5.9e-52 209.5 379 38.3
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 1.0e-51 208.8 437 38.2
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 1.7e-51 208.0 242 52.1
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 1.8e-48 198.0 294 42.9
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 4.0e-48 196.8 366 36.6
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 1.5e-47 194.9 488 35.2
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.7e-47 193.0 367 37.3
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 5.7e-47 193.0 367 37.3
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.3e-46 191.8 451 37.3
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 2.7e-41 174.1 293 44.4
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 3.6e-41 173.7 504 33.5
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 4.1e-37 160.2 426 34.0
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 2.3e-35 154.5 466 31.1
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 2.8e-33 147.5 243 44.4
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 4.7e-33 146.7 194 51.0
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.5e-31 141.7 197 44.2
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 2.4e-29 134.4 188 46.8
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 5.9e-28 129.8 228 39.0
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 1.3e-27 128.6 222 38.7
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 1.6e-25 121.7 195 40.5
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 2.1e-25 121.3 195 42.1
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 8.9e-24 115.9 334 30.5
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.7e-22 111.7 191 45.5
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 5.4e-21 106.7 239 39.7
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 9.2e-21 105.9 123 52.8
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.2e-20 105.5 276 35.1
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.6e-20 105.1 107 54.2
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 6.0e-20 103.2 148 42.6
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 1.5e-18 98.6 113 52.2
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 3.3e-18 97.4 199 38.2
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 1.8e-16 91.7 77 55.8
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 3.5e-12 77.4 110 45.5
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 1.7e-11 75.1 46 76.1
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.5e-10 71.2 58 58.6
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 7.3e-10 69.7 94 38.3
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 1.1e-08 65.9 42 71.4
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 3.1e-08 64.3 77 46.8
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 9.9e-07 59.3 399 22.6
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 1.7e-06 58.5 229 29.3


User provided reference genes

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