Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 4.2e-284 980.7 502 100.0
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 3.7e-248 861.3 526 87.3
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 1.1e-247 859.8 526 87.3
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 1.8e-247 859.0 529 86.4
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 4.1e-247 857.8 524 87.2
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 5.3e-247 857.4 526 87.1
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 5.9e-246 854.0 524 86.6
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 1.1e-244 849.7 538 83.6
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 4.0e-242 841.3 533 84.6
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 1.3e-240 836.3 532 83.8
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 8.5e-237 823.5 534 83.0
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 5.2e-234 814.3 527 82.5
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 8.6e-221 770.4 536 77.2
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 8.6e-205 717.2 532 72.2
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 6.4e-176 621.3 542 62.9
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 1.6e-174 616.7 532 69.7
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 1.3e-173 613.6 530 64.0
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 1.3e-171 607.1 544 61.6
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 1.6e-171 606.7 549 59.9
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 3.7e-171 605.5 537 62.6
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 4.8e-171 605.1 508 65.0
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 6.9e-170 601.3 506 64.6
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 6.9e-170 601.3 537 60.9
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 6.9e-170 601.3 542 61.1
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 2.6e-169 599.4 545 61.7
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 5.8e-169 598.2 537 61.3
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 2.2e-168 596.3 547 59.2
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 2.9e-168 595.9 523 62.0
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 2.9e-168 595.9 479 64.7
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 4.9e-168 595.1 531 60.8
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 8.4e-168 594.3 540 60.9
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 1.9e-167 593.2 532 61.3
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 7.1e-167 591.3 558 58.8
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 2.7e-166 589.3 556 58.6
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 1.3e-165 587.0 550 60.0
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 3.9e-165 585.5 564 59.0
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 1.5e-164 583.6 481 63.8
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 2.8e-163 579.3 441 67.6
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 1.1e-162 577.4 491 62.5
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 6.9e-162 574.7 478 64.0
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 9.0e-162 574.3 511 61.6
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 3.4e-161 572.4 561 57.8
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 3.4e-161 572.4 459 66.7
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 7.6e-161 571.2 513 61.0
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 6.5e-160 568.2 532 58.3
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 6.5e-160 568.2 540 58.7
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 1.4e-159 567.0 507 59.8
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 1.9e-159 566.6 552 58.0
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 1.9e-159 566.6 458 66.6
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 5.5e-159 565.1 460 65.7
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 1.2e-158 563.9 541 56.4
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 2.1e-158 563.1 541 58.8
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 1.8e-157 560.1 516 58.1
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 1.8e-157 560.1 460 65.7
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 1.8e-157 560.1 460 65.7
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 2.5e-156 556.2 535 57.0
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 5.7e-156 555.1 474 63.7
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 1.6e-155 553.5 547 56.5
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 3.7e-155 552.4 460 64.8
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 4.8e-155 552.0 603 51.7
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 4.1e-154 548.9 533 57.2
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 1.5e-153 547.0 516 57.9
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 2.0e-153 546.6 547 56.3
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 4.5e-153 545.4 479 61.0
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 7.6e-153 544.7 431 64.0
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 7.6e-153 544.7 510 58.0
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 2.2e-152 543.1 518 57.3
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 3.8e-152 542.3 509 58.7
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 5.0e-152 542.0 540 56.1
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 1.2e-150 537.3 467 60.4
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 1.6e-150 537.0 477 61.4
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 2.7e-150 536.2 562 54.3
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 6.1e-150 535.0 515 58.6
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 6.1e-150 535.0 513 58.9
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 7.9e-150 534.6 486 58.4
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 7.9e-150 534.6 512 58.8
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.8e-149 533.5 511 58.5
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 6.7e-149 531.6 433 63.0
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 6.7e-149 531.6 519 59.0
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.1e-148 530.8 514 58.6
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.1e-148 530.8 515 58.3
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 2.5e-148 529.6 508 57.1
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 2.4e-146 523.1 420 66.4
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 5.3e-146 521.9 533 56.7
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 1.5e-145 520.4 562 51.4
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 5.0e-144 515.4 562 51.2
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 3.2e-143 512.7 521 55.7
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 8.8e-141 504.6 452 60.0
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 8.8e-141 504.6 524 54.4
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 2.2e-139 500.0 524 55.2
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 6.3e-139 498.4 462 59.7
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 6.3e-139 498.4 560 53.9
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 1.1e-138 497.7 550 53.6
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 7.7e-137 491.5 437 60.6
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 7.2e-135 485.0 434 59.7
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 9.4e-135 484.6 526 52.9
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 3.0e-133 479.6 327 73.7
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 8.8e-133 478.0 533 52.0
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 1.8e-130 470.3 384 63.8
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 2.6e-129 466.5 460 53.5
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 3.5e-129 466.1 408 58.1
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 1.0e-128 464.5 673 45.2
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 8.5e-128 461.5 537 51.8
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 9.4e-127 458.0 345 67.2
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 1.6e-126 457.2 532 51.7
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 1.1e-122 444.5 493 51.1
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.6e-118 430.6 409 57.2
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 4.4e-116 422.5 463 53.1
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 7.3e-103 378.6 311 64.0
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 2.6e-100 370.2 448 49.3
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 2.6e-92 343.6 520 43.7
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 3.4e-92 343.2 361 51.2
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 1.3e-88 331.3 259 65.6
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 2.1e-86 323.9 287 55.4
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.3e-71 273.5 222 64.0
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 1.0e-64 251.9 373 39.7
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 5.1e-64 249.6 274 51.5
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 6.6e-64 249.2 478 36.0
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 1.2e-57 228.4 539 32.8
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 4.9e-43 179.9 224 46.9
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 3.1e-37 160.6 95 83.2
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 1.0e-32 145.6 150 49.3
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 5.7e-31 139.8 200 37.0
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 8.5e-27 125.9 211 40.8
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 5.1e-24 116.7 62 85.5
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 3.3e-23 114.0 80 66.2
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 2.1e-17 94.7 129 50.4
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 5.7e-15 86.7 83 51.8
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 1.7e-14 85.1 110 46.4
Aqoxy1G04253 Aquilegia oxysepala HOM05D006127 ORTHO05D078839 3.7e-06 57.4 49 63.3


User provided reference genes

Program Settings