Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 2.1e-233 812.4 528 100.0
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 4.2e-210 734.9 528 90.2
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 1.5e-207 726.5 542 88.4
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 3.3e-207 725.3 529 85.1
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 4.2e-194 681.8 561 77.4
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 5.9e-188 661.4 530 80.2
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 8.6e-171 604.4 530 77.2
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 8.6e-171 604.4 529 80.2
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 6.1e-169 598.2 528 72.3
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 5.0e-163 578.6 529 74.1
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 4.4e-151 538.9 529 70.9
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 1.3e-126 457.6 387 81.4
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 2.4e-125 453.4 414 75.6
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 3.6e-121 439.5 595 57.0
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 4.1e-96 356.3 560 59.8
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 2.3e-91 340.5 558 53.9
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 1.4e-88 331.3 553 57.9
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 2.4e-88 330.5 485 58.6
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 5.3e-88 329.3 554 51.6
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 2.6e-87 327.0 557 55.5
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 3.8e-86 323.2 559 51.0
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 5.0e-86 322.8 556 54.7
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 5.0e-86 322.8 558 54.8
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 6.5e-86 322.4 566 55.5
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 4.2e-85 319.7 562 52.1
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 1.6e-84 317.8 557 54.4
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 2.7e-84 317.0 549 56.5
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 6.1e-84 315.8 560 52.9
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 6.1e-84 315.8 552 56.5
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 7.9e-84 315.5 562 50.5
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 1.0e-83 315.1 560 48.0
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 1.0e-83 315.1 552 56.0
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 2.3e-83 313.9 559 54.6
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 8.8e-83 312.0 566 50.9
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 8.8e-83 312.0 557 49.2
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.1e-82 311.6 544 55.9
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 2.0e-82 310.8 542 48.0
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 2.0e-82 310.8 563 55.2
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 2.6e-82 310.5 554 49.1
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 4.4e-82 309.7 559 54.9
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.7e-81 307.8 562 52.3
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 2.8e-81 307.0 547 55.0
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 4.8e-81 306.2 559 55.8
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 8.2e-81 305.4 565 55.9
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 1.1e-80 305.1 547 55.9
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 1.1e-80 305.1 562 56.8
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.4e-80 304.7 565 55.9
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.8e-80 304.3 548 55.7
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 2.4e-80 303.9 562 52.1
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 7.0e-80 302.4 560 50.9
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 9.1e-80 302.0 560 52.7
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 1.2e-79 301.6 559 52.1
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 1.2e-79 301.6 553 50.3
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 1.5e-79 301.2 556 55.0
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 2.6e-79 300.4 555 54.2
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 4.5e-79 299.7 558 54.3
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.0e-78 298.5 577 47.1
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 6.5e-78 295.8 553 55.5
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 6.5e-78 295.8 550 50.0
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 6.5e-78 295.8 548 48.7
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 8.5e-78 295.4 550 49.1
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 1.1e-77 295.0 599 49.9
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.5e-77 294.7 592 46.6
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 4.2e-77 293.1 558 50.9
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 5.5e-77 292.7 556 51.6
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 1.2e-76 291.6 557 52.2
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 1.2e-76 291.6 586 53.9
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 1.6e-76 291.2 558 48.0
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 6.1e-76 289.3 559 53.5
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 8.0e-76 288.9 571 48.2
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 8.0e-76 288.9 559 52.1
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 1.0e-75 288.5 550 48.9
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 3.0e-75 287.0 556 54.7
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 6.7e-75 285.8 534 53.4
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.1e-74 285.0 555 52.3
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 1.1e-74 285.0 546 50.5
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 1.5e-74 284.6 556 50.5
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 1.5e-74 284.6 573 47.5
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 2.0e-74 284.3 557 52.6
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 2.6e-74 283.9 552 54.0
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 5.7e-74 282.7 558 50.9
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 7.4e-74 282.3 557 51.0
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 3.7e-73 280.0 553 54.2
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 8.2e-73 278.9 569 50.3
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.8e-72 277.7 543 54.7
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 2.4e-72 277.3 558 49.6
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 3.1e-72 276.9 571 48.3
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 7.0e-72 275.8 558 50.4
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 1.2e-71 275.0 557 52.6
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.2e-71 275.0 558 49.6
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.6e-71 274.6 563 49.6
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 5.9e-71 272.7 571 49.0
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.0e-70 271.9 552 49.5
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 2.9e-70 270.4 560 52.3
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 3.8e-70 270.0 562 51.2
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 6.5e-70 269.2 565 45.0
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 1.5e-69 268.1 547 47.2
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 4.2e-69 266.5 564 45.9
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 2.7e-68 263.8 566 51.2
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 4.0e-67 260.0 560 51.6
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 6.8e-67 259.2 552 49.1
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 8.3e-65 252.3 566 47.2
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 5.9e-63 246.1 548 51.5
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.0e-62 245.4 549 46.4
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 6.5e-62 242.7 555 44.7
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 1.2e-60 238.4 558 46.8
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 2.3e-59 234.2 551 42.8
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 1.2e-58 231.9 553 51.7
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 6.3e-57 226.1 548 43.8
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 2.4e-56 224.2 539 46.6
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 5.4e-56 223.0 591 44.8
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 9.1e-56 222.2 160 75.6
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 2.7e-55 220.7 491 49.1
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 4.5e-55 219.9 170 72.9
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 1.6e-52 211.5 169 71.0
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 4.7e-52 209.9 168 71.4
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 7.5e-50 202.6 478 51.5
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 8.3e-49 199.1 156 69.9
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 4.1e-48 196.8 165 66.1
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 5.4e-48 196.4 599 43.4
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 1.6e-47 194.9 530 35.5
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 4.5e-47 193.4 156 68.6
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 1.9e-45 188.0 468 48.7
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 3.9e-38 163.7 112 83.9
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 4.3e-29 133.7 124 63.7
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.8e-28 131.0 492 46.3
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 3.6e-28 130.6 261 49.4
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.0e-26 124.8 104 66.3
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 8.3e-25 119.4 299 44.5
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 4.1e-24 117.1 111 67.6
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 5.4e-24 116.7 503 38.0
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 9.2e-24 115.9 120 61.7
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 7.8e-23 112.8 110 62.7
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 5.6e-21 106.7 109 59.6
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.2e-18 99.0 102 54.9
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 7.6e-18 96.3 142 42.3
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.9e-17 94.4 64 76.6
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 6.4e-17 93.2 104 54.8
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 4.2e-16 90.5 74 63.5
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 6.0e-15 86.7 57 78.9
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.9e-13 81.6 65 66.2
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 1.1e-11 75.9 57 73.7
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 2.6e-10 71.2 80 55.0
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 4.9e-09 67.0 158 32.9
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 6.4e-09 66.6 107 50.5
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 8.4e-09 66.2 77 57.1
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 8.4e-09 66.2 77 57.1
BcaB04g19993 Brassica carinata HOM05D004889 ORTHO05D005478 7.9e-07 59.7 51 76.5
SEGI_30705 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 1.0e-06 59.3 86 46.5
SEGI_38811 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 1.0e-06 59.3 87 43.7
BcaC03g18166 Brassica carinata HOM05D043273 ORTHO05D039598 1.3e-06 58.9 38 73.7
C02p62360 Brassica napus HOM05D043273 ORTHO05D039598 1.3e-06 58.9 38 73.7
SEGI_10093 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 3.0e-06 57.8 86 44.2
BcaC04g23280 Brassica carinata HOM05D000171 ORTHO05D000101 8.7e-06 56.2 37 78.4
Carub.0005s1400 Capsella rubella HOM05D004889 ORTHO05D016590 8.7e-06 56.2 88 51.1
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 8.7e-06 56.2 78 51.3


User provided reference genes

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