Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09662 Brassica carinata HOM05D005095 ORTHO05D006156 6.9e-78 293.9 147 100.0
C05p58080 Brassica napus HOM05D005095 ORTHO05D006156 7.9e-50 200.7 158 67.7
Sp3g08310 Schrenkiella parvula HOM05D005095 ORTHO05D006156 2.1e-42 176.0 159 60.4
CARHR084470 Cardamine hirsuta HOM05D005095 ORTHO05D006156 2.7e-42 175.6 160 60.6
CARHR084480 Cardamine hirsuta HOM05D005095 ORTHO05D006156 4.7e-42 174.9 159 60.4
Thhalv10021191m.g Eutrema salsugineum HOM05D005095 ORTHO05D006156 8.0e-42 174.1 159 59.7
Aa31LG3G2470 Aethionema arabicum HOM05D005095 ORTHO05D006156 1.8e-41 172.9 159 59.7
AT3G09970 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 3.9e-41 171.8 159 59.1
AL3G21250 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 2.6e-40 169.1 159 57.9
C05p58070 Brassica napus HOM05D005095 ORTHO05D006156 2.6e-40 169.1 159 57.2
Carub.0003s0907 Capsella rubella HOM05D005095 ORTHO05D006156 9.7e-40 167.2 160 58.1
A05p39050 Brassica napus HOM05D005095 ORTHO05D006156 2.2e-39 166.0 159 55.3
BraA05t22697Z Brassica rapa HOM05D005095 ORTHO05D006156 2.2e-39 166.0 159 55.3
AT3G09960 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 4.8e-39 164.9 160 58.1
BolC5t34464H Brassica oleracea HOM05D005095 ORTHO05D006156 2.4e-38 162.5 159 55.3
BolC5t34465H Brassica oleracea HOM05D005095 ORTHO05D006156 3.5e-37 158.7 133 64.7
THA.LOC104816365 Tarenaya hassleriana HOM05D005095 ORTHO05D006156 4.5e-37 158.3 160 56.9
Manes.08G022501 Manihot esculenta HOM05D005095 ORTHO05D006156 1.3e-36 156.8 159 53.5
AL3G21240 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 2.9e-36 155.6 152 58.6
Atru.chr8.1610 Acer truncatum HOM05D005095 ORTHO05D006156 6.5e-36 154.5 159 52.8
Actinidia05448 Actinidia chinensis HOM05D005095 ORTHO05D006156 8.5e-36 154.1 159 53.5
Manes.08G022601 Manihot esculenta HOM05D005095 ORTHO05D006156 1.9e-35 152.9 166 51.8
Rhsim03G0078800 Rhododendron simsii HOM05D005095 ORTHO05D006156 5.5e-35 151.4 158 52.5
Peaxi162Scf00820g00056 Petunia axillaris HOM05D005095 ORTHO05D006156 9.4e-35 150.6 158 53.8
Ciclev10012289m.g Citrus clementina HOM05D005095 ORTHO05D006156 2.7e-34 149.1 159 50.9
Nitab4.5_0009950g0030 Nicotiana tabacum HOM05D005095 ORTHO05D006156 3.6e-34 148.7 159 52.2
Dinv21237 Davidia involucrata HOM05D005095 ORTHO05D006156 4.7e-34 148.3 159 50.3
QL07p039953 Quercus lobata HOM05D005095 ORTHO05D006156 6.1e-34 147.9 159 50.3
Sed0002679 Sechium edule HOM05D005095 ORTHO05D006156 8.0e-34 147.5 159 51.6
Lsat_1_v5_gn_2_22640 Lactuca sativa HOM05D005095 ORTHO05D006156 1.0e-33 147.1 159 52.2
CSS0041742 Camellia sinensis var. sinensis HOM05D005095 ORTHO05D006156 1.4e-33 146.7 159 52.2
TAR623G0504 Trochodendron aralioides HOM05D005095 ORTHO05D006156 1.8e-33 146.4 159 50.3
Cfa016561 Carpinus fangiana HOM05D005095 ORTHO05D006156 3.0e-33 145.6 159 48.4
EL10Ac7g16967 Beta vulgaris HOM05D005095 ORTHO05D006156 5.2e-33 144.8 152 52.6
AUR62033539 Chenopodium quinoa HOM05D005095 ORTHO05D006156 6.7e-33 144.4 159 51.6
MD12G1020700 Malus domestica HOM05D005095 ORTHO05D006156 6.7e-33 144.4 159 49.7
Aqoxy4G02848 Aquilegia oxysepala HOM05D005095 ORTHO05D006156 8.8e-33 144.1 159 50.9
Potri.002G156500 Populus trichocarpa HOM05D005095 ORTHO05D006156 8.8e-33 144.1 159 50.9
Nn6g35006 Nelumbo nucifera HOM05D005095 ORTHO05D006156 1.2e-32 143.7 159 53.5
PGR004G0044 Punica granatum HOM05D005095 ORTHO05D006156 1.2e-32 143.7 159 52.2
Cpa.g.sc5.61 Carica papaya HOM05D005095 ORTHO05D006156 1.5e-32 143.3 159 50.3
HanXRQChr14g0432521 Helianthus annuus HOM05D005095 ORTHO05D006156 2.0e-32 142.9 160 50.0
Thecc.05G083800 Theobroma cacao HOM05D005095 ORTHO05D006156 2.0e-32 142.9 159 49.7
MBI01_g08270_MAGBIO Magnolia biondii HOM05D005095 ORTHO05D006156 2.6e-32 142.5 159 50.3
CANSAT51G0008 Cannabis sativa HOM05D005095 ORTHO05D006156 3.3e-32 142.1 159 48.4
CANSAT51G0010 Cannabis sativa HOM05D005095 ORTHO05D006156 3.3e-32 142.1 159 48.4
CANSAT51G0015 Cannabis sativa HOM05D005095 ORTHO05D006156 3.3e-32 142.1 159 48.4
Prupe.7G115300 Prunus persica HOM05D005095 ORTHO05D006156 3.3e-32 142.1 159 48.4
COL.COLO4_29793 Corchorus olitorius HOM05D005095 ORTHO05D006156 4.4e-32 141.7 159 49.7
MELO3C009819.2 Cucumis melo HOM05D005095 ORTHO05D006156 4.4e-32 141.7 163 47.2
Lj2A132T56 Lonicera japonica HOM05D005095 ORTHO05D006156 4.4e-32 141.7 159 49.1
TWI74G0549 Tripterygium wilfordii HOM05D005095 ORTHO05D006156 4.4e-32 141.7 159 48.4
GSVIVG01033803001 Vitis vinifera HOM05D005095 ORTHO05D006156 4.4e-32 141.7 155 51.0
BcaC05g29723 Brassica carinata HOM05D005095 ORTHO05D006156 5.7e-32 141.4 88 85.2
SGA_v2.0_scaffold13G06769 Striga asiatica HOM05D005095 ORTHO05D006156 7.5e-32 141.0 158 50.0
Duzib093G0109 Durio zibethinus HOM05D005095 ORTHO05D006156 1.3e-31 140.2 159 49.7
Nitab4.5_0008581g0020 Nicotiana tabacum HOM05D005095 ORTHO05D006156 1.3e-31 140.2 155 52.3
BcaC05g29724 Brassica carinata HOM05D005095 ORTHO05D006156 1.7e-31 139.8 159 51.6
RcHm_v2.0_Chr3g0472431 Rosa chinensis HOM05D005095 ORTHO05D006156 1.7e-31 139.8 158 47.5
Gohir.A04G065328 Gossypium hirsutum HOM05D005095 ORTHO05D006156 2.2e-31 139.4 159 47.8
Sopen09g003900 Solanum pennellii HOM05D005095 ORTHO05D006156 2.2e-31 139.4 158 50.0
CiPaw.10G006700 Carya illinoinensis HOM05D005095 ORTHO05D006156 2.8e-31 139.0 159 47.2
CsaV3_3G036990 Cucumis sativus L. HOM05D005095 ORTHO05D006156 2.8e-31 139.0 159 48.4
PGSC0003DMG400002713 Solanum tuberosum HOM05D005095 ORTHO05D006156 2.8e-31 139.0 158 50.0
Gohir.D04G102800 Gossypium hirsutum HOM05D005095 ORTHO05D006156 3.7e-31 138.7 159 48.4
Gorai.009G406100 Gossypium raimondii HOM05D005095 ORTHO05D006156 3.7e-31 138.7 159 48.4
PSO339G4586 Papaver somniferum HOM05D005095 ORTHO05D006156 3.7e-31 138.7 159 48.4
Sabra02G0124100 Salix brachista HOM05D005095 ORTHO05D006156 4.8e-31 138.3 184 45.7
unitig_578.g15761 Utricularia gibba HOM05D000146 ORTHO05D006156 4.8e-31 138.3 159 51.6
ECA238G3195 Erigeron canadensis HOM05D005095 ORTHO05D006156 6.3e-31 137.9 160 47.5
Glyma.U031320 Glycine max HOM05D005095 ORTHO05D006156 6.3e-31 137.9 159 47.2
Solyc09g009170.4 Solanum lycopersicum HOM05D005095 ORTHO05D006156 6.3e-31 137.9 158 49.4
Lalb_Chr21g0315581 Lupinus albus HOM05D005095 ORTHO05D006156 8.2e-31 137.5 159 45.9
Potri.002G156200 Populus trichocarpa HOM05D005095 ORTHO05D006156 1.1e-30 137.1 159 49.7
TPR.G5702 Trifolium pratense HOM05D005095 ORTHO05D006156 1.1e-30 137.1 159 47.8
PSO384G1693 Papaver somniferum HOM05D005095 ORTHO05D006156 1.4e-30 136.7 159 47.2
Eucgr.A01531 Eucalyptus grandis HOM05D005095 ORTHO05D006156 1.8e-30 136.3 159 49.1
Medtr1g060860 Medicago truncatula HOM05D005095 ORTHO05D006156 1.8e-30 136.3 159 45.9
CsaV3_3G040830 Cucumis sativus L. HOM05D005095 ORTHO05D006156 2.4e-30 136.0 163 46.6
MELO3C009446.2 Cucumis melo HOM05D005095 ORTHO05D006156 3.1e-30 135.6 159 48.4
VMungo0720G2061 Vigna mungo HOM05D005095 ORTHO05D006156 3.1e-30 135.6 159 49.7
Psat6g080360 Pisum sativum HOM05D005095 ORTHO05D006156 4.1e-30 135.2 159 46.5
CAN.G824.21 Capsicum annuum HOM05D005095 ORTHO05D006156 5.3e-30 134.8 159 47.2
RcHm_v2.0_Chr3g0472441 Rosa chinensis HOM05D005095 ORTHO05D006156 9.1e-30 134.0 158 47.5
ClCG10G019200 Citrullus lanatus HOM05D005095 ORTHO05D006156 1.2e-29 133.7 171 46.2
FAN14G2314 Fragaria x ananassa HOM05D005095 ORTHO05D006156 1.2e-29 133.7 158 46.8
SalBow3G2853 Salvia bowleyana HOM05D005095 ORTHO05D006156 1.2e-29 133.7 158 48.7
FAN09G4215 Fragaria x ananassa HOM05D005095 ORTHO05D006156 1.6e-29 133.3 158 46.8
Nitab4.5_0004686g0050 Nicotiana tabacum HOM05D005095 ORTHO05D006156 2.0e-29 132.9 135 53.3
Lj5g0003292 Lotus japonicus HOM05D005095 ORTHO05D006156 2.7e-29 132.5 159 49.7
Thecc.05G084100 Theobroma cacao HOM05D005095 ORTHO05D006156 2.7e-29 132.5 159 47.2
Cc06_g05420 Coffea canephora HOM05D005095 ORTHO05D006156 3.5e-29 132.1 155 49.0
Migut.J00973 Erythranthe guttata HOM05D005095 ORTHO05D006156 3.5e-29 132.1 158 48.1
Phvul.007G222200 Phaseolus vulgaris HOM05D005095 ORTHO05D006156 7.7e-29 131.0 159 47.2
vmacro07384 Vaccinium macrocarpon HOM05D005095 ORTHO05D006156 1.0e-28 130.6 151 48.3
DCAR_013371 Daucus carota HOM05D005095 ORTHO05D006156 1.7e-28 129.8 176 43.8
Oeu018347.1 Olea europaea HOM05D005095 ORTHO05D006156 1.7e-28 129.8 158 44.9
Ca_11632_v3 Cicer arietinum L. HOM05D005095 ORTHO05D006156 2.9e-28 129.0 159 44.0
DCAR_007746 Daucus carota HOM05D005095 ORTHO05D006156 5.0e-28 128.3 157 45.2
Nitab4.5_0004686g0040 Nicotiana tabacum HOM05D005095 ORTHO05D006156 5.0e-28 128.3 202 40.1
TAR369G0658 Trochodendron aralioides HOM05D005095 ORTHO05D006156 5.0e-28 128.3 158 44.9
MSTRG.19241 Avicennia marina HOM05D005095 ORTHO05D006156 8.5e-28 127.5 157 47.8
ATR0820G022 Amborella trichopoda HOM05D005095 ORTHO05D006156 1.9e-27 126.3 159 45.3
ECA238G1993 Erigeron canadensis HOM05D005095 ORTHO05D006156 3.2e-27 125.6 152 47.4
Os04g0409500 Oryza sativa ssp. japonica HOM05D005095 ORTHO05D006156 4.2e-27 125.2 159 47.2
Gohir.D04G102500 Gossypium hirsutum HOM05D005095 ORTHO05D006156 1.2e-26 123.6 158 47.5
Gorai.009G405800 Gossypium raimondii HOM05D005095 ORTHO05D006156 1.2e-26 123.6 158 47.5
CDE02G4719 Ceratophyllum demersum HOM05D005095 ORTHO05D006156 3.6e-26 122.1 155 46.5
SEGI_28091 Sequoiadendron giganteum HOM05D005095 ORTHO05D006156 3.6e-26 122.1 158 45.6
arahy.Tifrunner.gnm1.ann1.133YU3 Arachis hypogaea HOM05D005095 ORTHO05D006156 4.7e-26 121.7 159 42.8
arahy.Tifrunner.gnm1.ann1.ARK388 Arachis hypogaea HOM05D005095 ORTHO05D006156 4.7e-26 121.7 159 42.8
DCAR_013370 Daucus carota HOM05D005095 ORTHO05D006156 8.0e-26 120.9 148 48.6
Zm00001eb421860 Zea mays HOM05D005095 ORTHO05D006156 5.2e-25 118.2 159 44.7
Ah.06g189980 Amaranthus hybridus HOM05D005095 ORTHO05D006156 1.5e-24 116.7 165 45.5
MD14G1018000 Malus domestica HOM05D005095 ORTHO05D006156 1.5e-24 116.7 189 40.7
Hund04015 Selenicereus undatus HOM05D005095 ORTHO05D006156 1.1e-22 110.5 93 60.2
Ah.06g189990 Amaranthus hybridus HOM05D005095 ORTHO05D006156 1.4e-22 110.2 159 43.4
Sc02g0001070 Simmondsia chinensis HOM05D005095 ORTHO05D006156 2.0e-21 106.3 134 47.8
CBR_g20302 Chara braunii HOM05D005095 ORTHO05D006156 3.5e-21 105.5 158 40.5
Nn6g35008 Nelumbo nucifera HOM05D005095 ORTHO05D006156 4.5e-21 105.1 147 46.3
DCAR_013372 Daucus carota HOM05D005095 ORTHO05D006156 5.9e-21 104.8 137 43.8
Sabra02G0123600 Salix brachista HOM05D005095 ORTHO05D006156 1.0e-20 104.0 90 60.0
Sed0010579 Sechium edule HOM05D005095 ORTHO05D006156 5.0e-20 101.7 131 42.0
MD14G1017800 Malus domestica HOM05D005095 ORTHO05D006156 1.1e-19 100.5 88 54.5
Glyma.10G067302 Glycine max HOM05D005095 ORTHO05D006156 2.5e-19 99.4 132 43.9
AagrBONN_evm.TU.Sc2ySwM_117.2042 Anthoceros agrestis HOM05D005095 ORTHO05D006156 5.5e-19 98.2 159 39.6
Nn6g35009 Nelumbo nucifera HOM05D005095 ORTHO05D006156 2.8e-18 95.9 93 59.1
FvH4_6g18140 Fragaria vesca HOM05D005095 ORTHO05D006156 6.1e-18 94.7 131 42.7
Mapoly0100s0026 Marchantia polymorpha HOM05D005095 ORTHO05D006156 8.0e-18 94.4 160 39.4
Pp3c12_22780 Physcomitrium patens HOM05D005095 ORTHO05D006156 1.4e-17 93.6 159 39.0
Duzib093G0628 Durio zibethinus HOM05D005095 ORTHO05D006156 5.2e-17 91.7 77 61.0
SMO352G0026 Selaginella moellendorffii HOM05D005095 ORTHO05D006156 5.2e-17 91.7 153 37.3
BcaC05g29512 Brassica carinata HOM05D005095 ORTHO05D006156 1.7e-12 76.6 41 85.4
HPP92_007823 Vanilla planifolia HOM05D005095 ORTHO05D006156 8.0e-10 67.8 130 39.2


User provided reference genes

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