Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 1.3e-206 723.0 419 100.0
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 2.0e-178 629.4 419 86.9
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 4.9e-177 624.8 420 86.7
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 4.9e-177 624.8 420 86.7
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 2.4e-176 622.5 427 85.2
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 3.0e-150 535.8 423 81.3
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 5.8e-146 521.5 423 75.4
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 2.0e-138 496.5 421 74.8
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 2.6e-138 496.1 433 71.4
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 1.0e-126 457.6 433 71.6
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 1.5e-122 443.7 493 60.9
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 8.2e-108 394.8 438 62.3
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 2.3e-78 297.0 427 50.6
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 2.7e-50 203.8 331 46.2
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 3.5e-50 203.4 369 42.8
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 4.3e-48 196.4 365 42.5
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 4.3e-48 196.4 358 45.3
CARHR276330 Cardamine hirsuta HOM05D005535 ORTHO05D018759 1.2e-47 194.9 222 60.4
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.4e-46 191.4 355 43.4
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 1.8e-46 191.0 377 41.9
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 4.0e-46 189.9 371 41.2
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 5.2e-46 189.5 377 43.0
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 5.2e-46 189.5 374 42.2
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 6.8e-46 189.1 272 47.1
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 8.9e-46 188.7 350 42.6
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 2.6e-45 187.2 303 45.9
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 6.4e-44 182.6 366 40.2
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 1.1e-43 181.8 260 47.3
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 1.1e-43 181.8 260 48.1
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 1.4e-43 181.4 344 43.6
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.9e-43 181.0 301 45.8
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 2.4e-43 180.6 373 40.5
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 5.4e-43 179.5 361 41.0
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 7.0e-43 179.1 372 41.4
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 1.2e-42 178.3 356 38.5
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 2.1e-42 177.6 351 41.3
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 2.7e-42 177.2 370 39.5
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 3.5e-42 176.8 358 38.0
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 6.0e-42 176.0 372 39.0
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 7.8e-42 175.6 348 39.7
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 1.3e-41 174.9 277 46.6
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 3.9e-41 173.3 377 40.1
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 5.0e-41 172.9 350 40.9
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 6.6e-41 172.6 350 40.0
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 8.6e-41 172.2 282 42.9
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.5e-40 171.4 356 39.3
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 3.3e-40 170.2 239 46.9
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 3.3e-40 170.2 377 40.1
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 5.6e-40 169.5 369 38.8
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 7.3e-40 169.1 348 39.1
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 7.3e-40 169.1 369 37.7
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.6e-39 167.9 351 39.3
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 1.6e-39 167.9 294 42.9
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 2.8e-39 167.2 357 41.5
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 4.7e-39 166.4 372 37.1
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 4.7e-39 166.4 369 39.8
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 4.7e-39 166.4 358 38.5
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 4.7e-39 166.4 275 45.5
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 6.2e-39 166.0 371 38.3
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 6.2e-39 166.0 373 37.8
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 6.2e-39 166.0 351 39.0
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 6.2e-39 166.0 274 46.0
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 6.2e-39 166.0 293 41.3
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 8.1e-39 165.6 366 37.7
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 1.4e-38 164.9 292 43.5
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 3.1e-38 163.7 329 41.0
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 3.1e-38 163.7 369 37.9
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 4.0e-38 163.3 374 37.4
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 5.2e-38 162.9 369 39.8
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 8.9e-38 162.2 365 37.3
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 8.9e-38 162.2 363 38.8
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 8.9e-38 162.2 386 36.5
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.2e-37 161.8 372 40.1
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.0e-37 161.0 343 37.9
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 3.4e-37 160.2 358 37.4
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 3.4e-37 160.2 357 37.3
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 7.5e-37 159.1 366 37.4
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 1.7e-36 157.9 231 48.1
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 2.2e-36 157.5 372 37.4
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 4.9e-36 156.4 368 38.3
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 4.9e-36 156.4 357 38.4
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 1.1e-35 155.2 276 43.5
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.1e-35 155.2 364 36.3
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 1.9e-35 154.5 369 35.8
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 7.1e-35 152.5 236 44.1
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 9.2e-35 152.1 359 36.5
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 1.2e-34 151.8 263 43.0
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 2.7e-34 150.6 375 38.4
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 3.5e-34 150.2 358 36.9
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 6.0e-34 149.4 371 38.0
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 7.8e-34 149.1 364 35.2
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 1.3e-33 148.3 366 35.8
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 3.9e-33 146.7 359 37.9
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 3.9e-33 146.7 358 37.2
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 3.9e-33 146.7 418 34.2
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 6.6e-33 146.0 279 42.3
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 1.1e-32 145.2 384 36.7
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 1.9e-32 144.4 346 37.0
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 2.5e-32 144.1 333 38.4
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 3.3e-32 143.7 262 39.7
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 4.3e-32 143.3 374 36.9
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 4.3e-32 143.3 292 38.4
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 4.3e-32 143.3 344 37.2
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 5.6e-32 142.9 279 38.4
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 7.3e-32 142.5 383 36.3
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 9.5e-32 142.1 342 35.4
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 2.8e-31 140.6 318 37.4
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 3.6e-31 140.2 343 35.0
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 1.1e-30 138.7 270 40.0
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 3.1e-30 137.1 365 34.5
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 4.0e-30 136.7 324 35.2
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 4.0e-30 136.7 279 38.7
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 5.2e-30 136.3 358 33.8
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 6.8e-30 136.0 282 39.0
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 8.9e-30 135.6 358 37.2
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 8.9e-30 135.6 266 41.0
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 1.5e-29 134.8 324 37.7
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 2.0e-29 134.4 342 35.7
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 2.6e-29 134.0 356 38.2
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 3.4e-29 133.7 348 37.6
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 5.8e-29 132.9 336 36.6
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 1.3e-28 131.7 235 43.0
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 1.7e-28 131.3 262 41.2
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 2.2e-28 131.0 369 35.5
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 8.4e-28 129.0 305 36.7
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 1.1e-27 128.6 363 33.9
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 1.1e-27 128.6 223 39.9
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 2.1e-26 124.4 378 34.7
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 1.9e-24 117.9 308 36.7
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 3.3e-24 117.1 276 38.4
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 1.1e-22 112.1 348 32.2
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 4.9e-20 103.2 331 30.5
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.1e-16 92.0 192 37.5
C07p22420 Brassica napus HOM05D017569 ORTHO05D018759 1.4e-14 85.1 63 77.8
BolC7t42752H Brassica oleracea HOM05D017569 ORTHO05D018759 1.4e-14 85.1 63 77.8
A02p27560 Brassica napus HOM05D017569 ORTHO05D018759 1.8e-14 84.7 63 77.8
A09p50050 Brassica napus HOM05D017569 ORTHO05D018759 1.8e-14 84.7 63 77.8
BraA02t07789Z Brassica rapa HOM05D017569 ORTHO05D018759 1.8e-14 84.7 63 77.8
BraA09t40456Z Brassica rapa HOM05D017569 ORTHO05D018759 1.8e-14 84.7 63 77.8
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 3.1e-14 84.0 385 28.8
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 1.9e-11 74.7 122 33.6
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 2.3e-09 67.8 217 30.4
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 1.1e-08 65.5 157 28.7
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 1.9e-08 64.7 124 33.1
THA.LOC104821571 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 4.3e-08 63.5 280 32.5
BcaC06g34882 Brassica carinata HOM05D017569 ORTHO05D018759 1.3e-07 62.0 58 67.2
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 1.6e-07 61.6 247 28.7
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 1.6e-07 61.6 69 44.9
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 4.8e-07 60.1 146 34.2
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 4.8e-07 60.1 162 28.4
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 4.8e-07 60.1 205 27.8
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 6.2e-07 59.7 76 36.8
ECA238G2082 Erigeron canadensis HOM05D008415 ORTHO05D010601 6.2e-07 59.7 101 34.7
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 6.2e-07 59.7 168 27.4
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 1.4e-06 58.5 170 28.8
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 1.4e-06 58.5 140 29.3
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 1.4e-06 58.5 150 30.7
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 3.1e-06 57.4 56 42.9
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 3.1e-06 57.4 189 28.0
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 4.0e-06 57.0 191 28.8
HanXRQChr14g0445691 Helianthus annuus HOM05D008415 ORTHO05D010601 5.3e-06 56.6 95 30.5
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 6.9e-06 56.2 132 30.3
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 6.9e-06 56.2 173 27.2
unitig_46.g18232 Utricularia gibba HOM05D008415 ORTHO05D010601 6.9e-06 56.2 113 32.7
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 9.0e-06 55.8 126 28.6
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 9.0e-06 55.8 154 31.2
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 9.0e-06 55.8 132 27.3


User provided reference genes

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