Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 1.7e-302 1042.0 560 100.0
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 5.8e-218 761.1 662 69.5
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 9.9e-218 760.4 664 69.1
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 2.2e-217 759.2 667 68.8
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 2.1e-188 662.9 657 63.5
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 2.8e-188 662.5 673 64.6
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 1.8e-182 643.3 585 68.2
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 9.4e-176 620.9 678 61.9
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 1.1e-165 587.4 677 58.5
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 2.8e-164 582.8 662 61.2
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 5.7e-141 505.4 598 58.7
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 1.6e-106 391.0 667 48.4
BcaNung01408 Brassica carinata HOM05D003765 ORTHO05D004561 4.6e-90 336.3 558 48.6
BolC9t53753H Brassica oleracea HOM05D003765 ORTHO05D004561 8.1e-87 325.5 533 49.5
BcaC04g23427 Brassica carinata HOM05D003765 ORTHO05D004561 7.6e-85 318.9 533 49.3
BcaNung01409 Brassica carinata HOM05D003765 ORTHO05D004561 4.9e-84 316.2 526 48.9
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 4.9e-84 316.2 650 41.7
C09p08430 Brassica napus HOM05D003765 ORTHO05D004561 1.6e-82 311.2 549 48.1
BraA09t36408Z Brassica rapa HOM05D003765 ORTHO05D004561 6.7e-81 305.8 530 48.9
A09p07540 Brassica napus HOM05D003765 ORTHO05D004561 5.3e-78 296.2 546 47.6
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.6e-74 284.6 653 40.4
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 3.1e-46 190.7 707 32.1
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 3.0e-41 174.1 699 29.2
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 4.0e-41 173.7 722 30.9
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 1.7e-39 168.3 707 29.8
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 9.1e-38 162.5 666 30.0
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 3.5e-37 160.6 702 30.9
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 4.5e-37 160.2 705 28.8
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 1.3e-36 158.7 674 29.7
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 6.5e-36 156.4 718 32.5
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 8.5e-36 156.0 655 29.9
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 2.5e-35 154.5 625 31.5
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 3.2e-35 154.1 651 30.4
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 4.2e-35 153.7 655 29.6
Aa31LG6G8690 Aethionema arabicum HOM05D003765 ORTHO05D004561 9.4e-35 152.5 280 50.4
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.2e-34 152.1 647 30.3
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 6.1e-34 149.8 660 29.4
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 8.0e-34 149.4 666 29.3
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.3e-33 147.9 658 29.5
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.0e-33 147.5 658 29.2
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 4.0e-33 147.1 633 30.3
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 5.2e-33 146.7 663 30.5
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 2.8e-31 141.0 546 31.0
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 1.3e-28 132.1 599 31.6
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 5.0e-28 130.2 703 28.4
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.5e-27 127.9 682 26.8
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 2.5e-27 127.9 620 28.9
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 5.5e-27 126.7 638 28.7
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 1.2e-26 125.6 706 29.9
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 1.6e-26 125.2 735 27.2
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 1.6e-26 125.2 637 30.0
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 4.7e-26 123.6 582 29.9
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 6.1e-26 123.2 702 27.6
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 1.0e-25 122.5 637 30.0
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 2.3e-25 121.3 604 30.0
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 4.0e-25 120.6 626 27.2
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 4.0e-25 120.6 618 28.0
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 6.8e-25 119.8 570 30.2
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.2e-24 119.0 616 27.6
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.5e-24 118.6 566 29.2
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 7.5e-24 116.3 718 28.3
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 9.8e-24 115.9 622 28.6
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 2.2e-23 114.8 702 28.1
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 6.3e-23 113.2 701 27.2
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 6.3e-23 113.2 704 26.8
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 8.3e-23 112.8 625 31.2
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 1.1e-22 112.5 658 29.0
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.4e-22 111.3 623 28.3
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 3.1e-22 110.9 480 32.1
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 3.1e-22 110.9 696 27.6
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 5.4e-22 110.2 734 29.2
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 7.0e-22 109.8 430 32.3
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 7.0e-22 109.8 628 28.8
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 1.2e-21 109.0 701 26.5
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 2.7e-21 107.8 703 27.3
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 3.5e-21 107.5 627 28.5
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 4.5e-21 107.1 705 26.5
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 4.5e-21 107.1 539 30.8
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 1.0e-20 105.9 745 27.2
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 1.7e-20 105.1 525 30.1
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 2.3e-20 104.8 589 28.4
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 3.9e-20 104.0 685 26.4
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 6.6e-20 103.2 679 28.6
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 8.6e-20 102.8 686 28.1
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.1e-19 102.4 559 28.4
DCAR_009410 Daucus carota HOM05D003765 ORTHO05D004561 1.5e-19 102.1 537 31.3
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 4.3e-19 100.5 535 27.7
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 5.6e-19 100.1 507 29.6
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 2.1e-18 98.2 697 27.5
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 2.1e-18 98.2 682 26.7
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 2.8e-18 97.8 634 28.9
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 3.6e-18 97.4 689 28.0
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 4.7e-18 97.1 653 26.8
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 8.0e-18 96.3 550 27.5
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 1.4e-17 95.5 650 28.5
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 1.8e-17 95.1 575 29.2
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 1.8e-17 95.1 622 25.7
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 3.1e-17 94.4 544 28.7
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 6.8e-17 93.2 592 27.9
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 1.2e-16 92.4 576 30.2
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 1.2e-16 92.4 536 29.7
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 1.5e-16 92.0 668 25.1
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 2.6e-16 91.3 407 32.7
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 3.4e-16 90.9 757 25.8
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 3.4e-16 90.9 664 27.1
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 7.5e-16 89.7 405 30.1
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 9.8e-16 89.4 664 26.2
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 9.8e-16 89.4 671 25.0
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 9.8e-16 89.4 585 28.0
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 1.3e-15 89.0 539 28.4
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 2.9e-15 87.8 772 25.8
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 1.4e-14 85.5 494 28.9
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 2.4e-14 84.7 600 26.8
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 4.1e-14 84.0 586 27.8
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 7.0e-14 83.2 466 27.9
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 2.7e-13 81.3 519 27.7
MELO3C006859.2 Cucumis melo HOM05D003765 ORTHO05D004561 3.5e-13 80.9 242 33.1
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 6.0e-13 80.1 345 29.9
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 7.8e-13 79.7 550 24.4
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 2.3e-12 78.2 387 30.2
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 3.0e-12 77.8 599 26.7
A10p09680 Brassica napus HOM05D003765 ORTHO05D004561 3.9e-12 77.4 541 28.1
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 1.1e-11 75.9 661 24.8
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 1.9e-11 75.1 603 24.2
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 1.9e-11 75.1 541 27.9
Lalb_Chr02g0140881 Lupinus albus HOM05D003765 ORTHO05D004561 1.9e-11 75.1 672 24.7
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 1.9e-11 75.1 480 26.7
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 6.2e-10 70.1 580 25.9
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 8.0e-10 69.7 548 25.2
CsaV3_3G016640 Cucumis sativus L. HOM05D003765 ORTHO05D004561 2.3e-09 68.2 335 29.9
C09p41340 Brassica napus HOM05D003765 ORTHO05D004561 6.8e-09 66.6 336 31.0
BolC9t57009H Brassica oleracea HOM05D003765 ORTHO05D004561 6.8e-09 66.6 336 31.0
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 6.8e-09 66.6 645 24.8
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 8.9e-09 66.2 345 28.7
Dinv28507 Davidia involucrata HOM05D003765 ORTHO05D004561 1.2e-08 65.9 43 58.1
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 2.0e-08 65.1 514 27.0
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 2.0e-08 65.1 396 30.1
BcaB08g35538 Brassica carinata HOM05D003765 ORTHO05D004561 1.7e-07 62.0 338 29.3
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 2.9e-07 61.2 683 24.0
arahy.Tifrunner.gnm1.ann1.S2H83J Arachis hypogaea HOM05D003765 ORTHO05D004561 3.7e-07 60.8 553 24.8
AT4G25430 Arabidopsis thaliana HOM05D003765 ORTHO05D023707 5.4e-06 57.0 341 28.2
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 7.0e-06 56.6 242 29.8
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 9.2e-06 56.2 463 25.5


User provided reference genes

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