Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09611 Brassica carinata HOM05D005764 ORTHO05D006600 1.8e-290 1002.7 887 100.0
BraA06t25809Z Brassica rapa HOM05D005764 ORTHO05D006600 5.1e-168 595.9 1005 70.5
A06p28690 Brassica napus HOM05D005764 ORTHO05D006600 1.1e-167 594.7 1005 70.4
C03p65110 Brassica napus HOM05D005764 ORTHO05D006600 6.1e-145 519.2 980 71.2
BolC3t18765H Brassica oleracea HOM05D005764 ORTHO05D006600 5.7e-143 512.7 980 70.9
Sp2g25170 Schrenkiella parvula HOM05D005764 ORTHO05D006600 2.0e-119 434.5 989 63.6
Thhalv10003592m.g Eutrema salsugineum HOM05D005764 ORTHO05D006600 1.0e-115 422.2 989 61.9
Carub.0008s2268 Capsella rubella HOM05D005764 ORTHO05D006600 8.6e-107 392.5 996 62.8
CARHR275790 Cardamine hirsuta HOM05D005764 ORTHO05D006600 1.4e-104 385.2 993 61.5
AT5G61990 Arabidopsis thaliana HOM05D005764 ORTHO05D006600 9.5e-98 362.5 975 62.3
AL8G38750 Arabidopsis lyrata HOM05D005764 ORTHO05D006600 9.9e-87 325.9 992 61.5
Aa31LG11G1530 Aethionema arabicum HOM05D005764 ORTHO05D006600 4.0e-80 303.9 960 56.7
THA.LOC104804672 Tarenaya hassleriana HOM05D005764 ORTHO05D006600 5.6e-74 283.5 235 61.3
Manes.06G126050 Manihot esculenta HOM05D005764 ORTHO05D006600 1.3e-41 176.0 212 45.3
GSVIVG01030107001 Vitis vinifera HOM05D005764 ORTHO05D006600 7.2e-37 160.2 268 34.7
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.6e-36 159.1 248 40.3
Dinv21306 Davidia involucrata HOM05D005764 ORTHO05D006600 3.6e-36 157.9 218 40.4
FvH4_5g09340 Fragaria vesca HOM05D005764 ORTHO05D006600 3.9e-35 154.5 225 42.7
CSS0040489 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 6.7e-35 153.7 213 42.7
FAN18G2453 Fragaria x ananassa HOM05D005764 ORTHO05D006600 1.5e-34 152.5 225 42.2
Atru.chr6.1906 Acer truncatum HOM05D005764 ORTHO05D006600 4.4e-34 151.0 213 43.2
Lj1C797T15 Lonicera japonica HOM05D005764 ORTHO05D006600 4.4e-34 151.0 250 37.2
Lj1C797T16 Lonicera japonica HOM05D005764 ORTHO05D006600 4.4e-34 151.0 250 37.2
Gorai.003G116400 Gossypium raimondii HOM05D005764 ORTHO05D006600 5.7e-34 150.6 227 39.6
Sed0013038 Sechium edule HOM05D005764 ORTHO05D006600 2.2e-33 148.7 216 38.9
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 2.8e-33 148.3 227 38.3
Ah.11g046810 Amaranthus hybridus HOM05D005764 ORTHO05D006600 1.4e-32 146.0 214 40.2
Cfa014216 Carpinus fangiana HOM05D005764 ORTHO05D006600 2.4e-32 145.2 226 38.9
ClCG02G014020 Citrullus lanatus HOM05D005764 ORTHO05D006600 2.4e-32 145.2 216 38.0
CsaV3_5G006140 Cucumis sativus L. HOM05D005764 ORTHO05D006600 2.4e-32 145.2 248 33.9
SalBow7G2732 Salvia bowleyana HOM05D005764 ORTHO05D006600 2.4e-32 145.2 219 39.3
RcHm_v2.0_Chr7g0188811 Rosa chinensis HOM05D005764 ORTHO05D006600 3.1e-32 144.8 214 42.5
Gohir.D03G110000 Gossypium hirsutum HOM05D005764 ORTHO05D006600 5.3e-32 144.1 227 39.2
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 6.9e-32 143.7 217 40.6
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 9.1e-32 143.3 226 39.8
Haze_12617 Corylus avellana HOM05D005764 ORTHO05D006600 9.1e-32 143.3 237 37.6
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 1.2e-31 142.9 197 40.6
Duzib205G1181 Durio zibethinus HOM05D005764 ORTHO05D006600 1.5e-31 142.5 207 43.0
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 1.5e-31 142.5 216 42.1
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.5e-31 142.5 234 37.2
Haze_12606 Corylus avellana HOM05D005764 ORTHO05D006600 3.4e-31 141.4 237 37.1
Dinv13731 Davidia involucrata HOM05D005764 ORTHO05D006600 4.5e-31 141.0 218 39.9
PGR042G2810 Punica granatum HOM05D005764 ORTHO05D006600 5.9e-31 140.6 206 40.3
Rhsim08G0196300 Rhododendron simsii HOM05D005764 ORTHO05D006600 5.9e-31 140.6 220 39.1
TWI14G0891 Tripterygium wilfordii HOM05D005764 ORTHO05D006600 5.9e-31 140.6 213 38.5
Gohir.A03G056500 Gossypium hirsutum HOM05D005764 ORTHO05D006600 1.0e-30 139.8 204 40.2
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 1.0e-30 139.8 216 37.0
Actinidia07859 Actinidia chinensis HOM05D005764 ORTHO05D006600 1.3e-30 139.4 254 34.3
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 1.7e-30 139.0 233 39.9
Ciclev10033858m.g Citrus clementina HOM05D005764 ORTHO05D006600 2.9e-30 138.3 191 40.8
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 3.8e-30 137.9 209 41.6
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 5.0e-30 137.5 216 36.1
Potri.015G105400 Populus trichocarpa HOM05D005764 ORTHO05D006600 1.1e-29 136.3 225 38.7
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 1.4e-29 136.0 249 32.9
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 1.4e-29 136.0 206 38.8
ATR0317G130 Amborella trichopoda HOM05D005764 ORTHO05D006600 4.2e-29 134.4 222 35.1
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 5.5e-29 134.0 234 35.9
vmacro19173 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 5.5e-29 134.0 201 41.8
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 1.2e-28 132.9 215 36.7
AUR62034761 Chenopodium quinoa HOM05D005764 ORTHO05D006600 2.7e-28 131.7 211 37.4
AUR62041690 Chenopodium quinoa HOM05D005764 ORTHO05D006600 2.7e-28 131.7 211 37.4
PSO017G0179 Papaver somniferum HOM05D005764 ORTHO05D006600 3.6e-28 131.3 254 33.9
QL11p027136 Quercus lobata HOM05D005764 ORTHO05D006600 6.1e-28 130.6 213 39.4
EL10Ac5g11299 Beta vulgaris HOM05D005764 ORTHO05D006600 7.9e-28 130.2 195 42.6
CSS0045653 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 7.9e-28 130.2 224 37.1
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 7.9e-28 130.2 206 38.8
vmacro12075 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 7.9e-28 130.2 234 35.0
AUR62009526 Chenopodium quinoa HOM05D005764 ORTHO05D006600 1.8e-27 129.0 216 36.1
Sc04g0000230 Simmondsia chinensis HOM05D005764 ORTHO05D006600 1.8e-27 129.0 214 37.9
Migut.I00614 Erythranthe guttata HOM05D005764 ORTHO05D006600 2.3e-27 128.6 222 39.6
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 2.3e-27 128.6 206 38.3
CSS0031853 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 3.0e-27 128.3 228 36.4
Cpa.g.sc211.34 Carica papaya HOM05D005764 ORTHO05D006600 3.9e-27 127.9 250 32.8
Rhsim06G0177300 Rhododendron simsii HOM05D005764 ORTHO05D006600 5.2e-27 127.5 266 34.2
TAR633G1425 Trochodendron aralioides HOM05D005764 ORTHO05D006600 5.2e-27 127.5 214 35.0
Dinv18433 Davidia involucrata HOM05D005764 ORTHO05D006600 8.8e-27 126.7 201 38.3
CAN.G177.15 Capsicum annuum HOM05D005764 ORTHO05D006600 1.5e-26 125.9 208 37.0
Lj1A1039T30 Lonicera japonica HOM05D005764 ORTHO05D006600 1.5e-26 125.9 200 38.5
Lsat_1_v5_gn_4_84661 Lactuca sativa HOM05D005764 ORTHO05D006600 2.0e-26 125.6 202 39.1
QL04p067861 Quercus lobata HOM05D005764 ORTHO05D006600 2.6e-26 125.2 215 36.3
vmacro19172 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 7.4e-26 123.6 200 40.0
PGSC0003DMG400017401 Solanum tuberosum HOM05D005764 ORTHO05D006600 3.7e-25 121.3 213 36.2
Oeu005567.3 Olea europaea HOM05D005764 ORTHO05D006600 6.3e-25 120.6 239 34.7
Thecc.01G197100 Theobroma cacao HOM05D005764 ORTHO05D006600 1.1e-24 119.8 251 34.7
Sopen07g023950 Solanum pennellii HOM05D005764 ORTHO05D006600 1.4e-24 119.4 211 37.0
SGA_v2.0_scaffold74G24732 Striga asiatica HOM05D005764 ORTHO05D006600 4.1e-24 117.9 230 33.5
Aqoxy7G02956 Aquilegia oxysepala HOM05D005764 ORTHO05D006600 5.3e-24 117.5 209 31.6
DCAR_016460 Daucus carota HOM05D005764 ORTHO05D006600 1.6e-23 115.9 218 35.3
HanXRQChr09g0273911 Helianthus annuus HOM05D005764 ORTHO05D006600 1.3e-22 112.8 189 39.7
Atru.chr6.3404 Acer truncatum HOM05D005764 ORTHO05D006600 2.2e-22 112.1 220 35.0
Prupe.5G142900 Prunus persica HOM05D005764 ORTHO05D006600 1.0e-19 103.2 213 33.3
Actinidia25528 Actinidia chinensis HOM05D005764 ORTHO05D006600 1.4e-19 102.8 144 41.7
Thecc.03G139200 Theobroma cacao HOM05D005764 ORTHO05D006600 6.7e-19 100.5 130 40.0
QL04p006829 Quercus lobata HOM05D000056 ORTHO05D000019 2.6e-18 98.6 165 39.4
HanXRQChr16g0498891 Helianthus annuus HOM05D005764 ORTHO05D006600 2.8e-17 95.1 201 32.3
Os07g0300200 Oryza sativa ssp. japonica HOM05D005764 ORTHO05D006600 2.8e-17 95.1 226 30.1
CDE05G2510 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 1.4e-16 92.8 185 31.9
vmacro19171 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 3.1e-16 91.7 137 42.3
Nitab4.5_0006992g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 7.7e-15 87.0 93 50.5
RcHm_v2.0_Chr2g0162681 Rosa chinensis HOM05D005764 ORTHO05D006600 7.7e-15 87.0 131 42.0
CAN.G805.2 Capsicum annuum HOM05D005764 ORTHO05D006600 5.0e-14 84.3 134 38.8
Solyc07g045400.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 5.0e-14 84.3 159 35.2
CiPaw.11G052700 Carya illinoinensis HOM05D005764 ORTHO05D006600 1.9e-13 82.4 120 39.2
Atru.chr6.3419 Acer truncatum HOM05D005764 ORTHO05D006600 5.5e-13 80.9 213 31.0
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 7.2e-13 80.5 255 26.3
Lsat_1_v5_gn_9_103540 Lactuca sativa HOM05D005764 ORTHO05D006600 7.2e-13 80.5 235 26.4
Atru.chr6.3407 Acer truncatum HOM05D005764 ORTHO05D006600 1.6e-12 79.3 214 30.4
Nitab4.5_0005425g0010 Nicotiana tabacum HOM05D005764 ORTHO05D006600 2.7e-12 78.6 93 47.3
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 1.4e-11 76.3 254 24.8
vmacro03705 Vaccinium macrocarpon HOM05D007956 ORTHO05D010152 3.0e-11 75.1 261 25.7
ECA232G3323 Erigeron canadensis HOM05D005764 ORTHO05D006600 4.0e-11 74.7 128 35.2
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 5.2e-11 74.3 257 24.5
Atru.chr1.4150 Acer truncatum HOM05D005764 ORTHO05D006600 6.8e-11 73.9 168 33.9
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 6.8e-11 73.9 257 25.7
Actinidia05532 Actinidia chinensis HOM05D007956 ORTHO05D010152 1.2e-10 73.2 258 25.6
ATR0317G133 Amborella trichopoda HOM05D005764 ORTHO05D006600 1.2e-10 73.2 104 35.6
Prupe.4G025500 Prunus persica HOM05D007956 ORTHO05D010152 2.6e-10 72.0 288 24.7
Eucgr.E04114 Eucalyptus grandis HOM05D007956 ORTHO05D010152 9.8e-10 70.1 297 24.2
PGR042G2623 Punica granatum HOM05D007956 ORTHO05D010152 9.8e-10 70.1 333 21.9
Eucgr.J02064 Eucalyptus grandis HOM05D007212 ORTHO05D009094 1.7e-09 69.3 254 23.6
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 2.8e-09 68.6 191 23.6
Ciclev10014235m.g Citrus clementina HOM05D005764 ORTHO05D006600 8.3e-09 67.0 157 34.4
MD00G1180200 Malus domestica HOM05D007956 ORTHO05D010152 1.8e-08 65.9 259 23.9
MELO3C011746.2 Cucumis melo HOM05D005764 ORTHO05D006600 2.4e-08 65.5 105 33.3
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 2.4e-08 65.5 246 24.8
PSO339G3988 Papaver somniferum HOM05D007212 ORTHO05D009094 3.1e-08 65.1 280 22.5
ECA248G1009 Erigeron canadensis HOM05D005764 ORTHO05D006600 5.4e-08 64.3 98 36.7
FAN22G0497 Fragaria x ananassa HOM05D007623 ORTHO05D009641 5.4e-08 64.3 244 24.6
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 7.0e-08 63.9 281 23.8
Ah.02g113700 Amaranthus hybridus HOM05D007763 ORTHO05D009537 9.1e-08 63.5 116 31.9
ATR0580G451 Amborella trichopoda HOM05D007212 ORTHO05D009094 1.2e-07 63.2 241 22.0
SGA_v2.0_scaffold25G10931 Striga asiatica HOM05D007763 ORTHO05D009537 1.2e-07 63.2 198 31.8
ATR0661G317 Amborella trichopoda HOM05D007545 ORTHO05D009579 1.6e-07 62.8 233 22.7
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 2.0e-07 62.4 131 30.5
Cfa019553 Carpinus fangiana HOM05D002453 ORTHO05D008746 2.0e-07 62.4 106 31.1
Lsat_1_v5_gn_5_21540 Lactuca sativa HOM05D007763 ORTHO05D009537 2.0e-07 62.4 122 32.8
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 2.0e-07 62.4 185 24.3
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 2.7e-07 62.0 268 23.1
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 3.5e-07 61.6 195 27.2
QL05p074803 Quercus lobata HOM05D007956 ORTHO05D010152 3.5e-07 61.6 259 22.0
Aqoxy7G03003 Aquilegia oxysepala HOM05D005764 ORTHO05D006600 4.5e-07 61.2 117 34.2
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 5.9e-07 60.8 225 23.1
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 5.9e-07 60.8 51 52.9
Aa31LG9G1210 Aethionema arabicum HOM05D007358 ORTHO05D009117 7.7e-07 60.5 159 22.6
Aqoxy6G01459 Aquilegia oxysepala HOM05D007660 ORTHO05D009442 1.0e-06 60.1 105 26.7
Dinv02560 Davidia involucrata HOM05D008657 ORTHO05D010869 1.0e-06 60.1 123 26.0
SHI18058 Sapria himalayana HOM05D006888 ORTHO05D008371 1.0e-06 60.1 71 35.2
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.3e-06 59.7 142 25.4
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 1.3e-06 59.7 369 21.7
RcHm_v2.0_Chr7g0229441 Rosa chinensis HOM05D005764 ORTHO05D006600 1.3e-06 59.7 138 29.0
Phvul.008G024400 Phaseolus vulgaris HOM05D004127 ORTHO05D005119 1.7e-06 59.3 112 27.7
HPP92_025492 Vanilla planifolia HOM05D005764 ORTHO05D006600 1.7e-06 59.3 90 38.9
COL.COLO4_06641 Corchorus olitorius HOM05D007956 ORTHO05D010152 2.2e-06 58.9 169 27.2
MELO3C009312.2 Cucumis melo HOM05D000855 ORTHO05D008530 2.2e-06 58.9 110 29.1
MD11G1144200 Malus domestica HOM05D007212 ORTHO05D009094 2.2e-06 58.9 209 23.0
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 2.2e-06 58.9 212 23.1
TWI60G1313 Tripterygium wilfordii HOM05D007763 ORTHO05D009537 2.2e-06 58.9 108 36.1
AUR62021645 Chenopodium quinoa HOM05D007763 ORTHO05D009537 2.9e-06 58.5 175 27.4
THA.LOC104805375 Tarenaya hassleriana HOM05D007358 ORTHO05D009117 2.9e-06 58.5 169 22.5
CANSAT64G0130 Cannabis sativa HOM05D007623 ORTHO05D009641 3.8e-06 58.2 243 25.1
CDE05G0100 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 3.8e-06 58.2 148 27.7
CsaV3_3G035530 Cucumis sativus L. HOM05D000855 ORTHO05D008530 3.8e-06 58.2 110 29.1
ECA240G4054 Erigeron canadensis HOM05D005764 ORTHO05D006600 3.8e-06 58.2 124 32.3
Lsat_1_v5_gn_4_59081 Lactuca sativa HOM05D007956 ORTHO05D010152 3.8e-06 58.2 236 21.2
HPP92_020726 Vanilla planifolia HOM05D000891 ORTHO05D000761 5.0e-06 57.8 104 30.8
arahy.Tifrunner.gnm1.ann1.6HP7HZ Arachis hypogaea HOM05D002890 ORTHO05D009847 6.5e-06 57.4 64 40.6
arahy.Tifrunner.gnm1.ann1.J4YFBX Arachis hypogaea HOM05D002890 ORTHO05D009847 6.5e-06 57.4 64 40.6
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 6.5e-06 57.4 110 28.2
Prupe.6G082100 Prunus persica HOM05D007212 ORTHO05D009094 6.5e-06 57.4 206 21.8
Solyc02g080170.1 Solanum lycopersicum HOM05D007956 ORTHO05D010152 6.5e-06 57.4 245 22.9
Cc11_g03820 Coffea canephora HOM05D006106 ORTHO05D015839 8.5e-06 57.0 125 29.6
Glyma.18G276500 Glycine max HOM05D004127 ORTHO05D005119 8.5e-06 57.0 107 29.0
HanXRQChr03g0080361 Helianthus annuus HOM05D003039 ORTHO05D008410 8.5e-06 57.0 102 29.4
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 8.5e-06 57.0 110 28.2
Hund21836 Selenicereus undatus HOM05D007830 ORTHO05D009947 8.5e-06 57.0 185 29.7
GSVIVG01012782001 Vitis vinifera HOM05D003039 ORTHO05D008410 8.5e-06 57.0 102 31.4


User provided reference genes

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