Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 1.7e-109 399.4 212 100.0
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 1.4e-87 326.6 226 80.5
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 1.4e-87 326.6 226 80.5
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 4.0e-87 325.1 226 79.6
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 4.0e-87 325.1 226 79.6
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 4.0e-87 325.1 226 79.6
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 2.0e-86 322.8 226 79.2
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 1.4e-84 316.6 246 73.6
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 3.5e-83 312.0 226 76.1
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 1.0e-82 310.5 226 76.5
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 4.9e-77 291.6 226 75.7
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 1.4e-76 290.0 226 72.1
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 7.1e-76 287.7 226 70.8
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 2.1e-75 286.2 198 80.8
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 1.4e-71 273.5 210 75.2
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 5.8e-70 268.1 227 68.3
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 7.6e-70 267.7 226 66.8
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 2.9e-69 265.8 225 66.7
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 2.5e-68 262.7 226 67.3
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 2.5e-68 262.7 210 74.8
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 2.5e-68 262.7 210 74.8
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 2.4e-63 246.1 229 60.7
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 1.2e-62 243.8 222 61.7
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 1.1e-57 227.3 210 62.9
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 7.4e-49 198.0 231 51.5
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 1.4e-42 177.2 210 47.6
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 1.1e-39 167.5 223 45.7
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 1.1e-39 167.5 223 45.7
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 1.4e-39 167.2 223 45.3
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 5.9e-38 161.8 223 44.4
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 8.5e-37 157.9 222 45.5
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 1.1e-36 157.5 223 45.3
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 1.5e-36 157.1 222 42.3
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 1.9e-36 156.8 225 43.1
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 2.5e-36 156.4 223 44.8
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 2.5e-36 156.4 226 41.6
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 3.2e-36 156.0 225 43.1
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 5.5e-36 155.2 208 46.2
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 1.2e-35 154.1 118 72.9
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.2e-35 154.1 232 40.5
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 1.2e-35 154.1 222 39.2
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 2.1e-35 153.3 219 43.4
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 6.1e-35 151.8 223 43.5
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 2.3e-34 149.8 191 44.0
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 3.0e-34 149.4 221 41.6
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 5.2e-34 148.7 219 41.1
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 5.7e-33 145.2 226 40.3
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 7.5e-33 144.8 226 38.9
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 7.5e-33 144.8 222 41.9
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 1.7e-32 143.7 210 37.6
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.1e-31 141.0 251 37.1
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 1.1e-31 141.0 207 45.4
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 1.4e-31 140.6 221 40.7
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.8e-31 140.2 223 39.0
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.8e-31 140.2 206 40.3
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.4e-31 139.8 223 39.0
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 2.4e-31 139.8 221 40.7
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 5.3e-31 138.7 222 38.3
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 5.3e-31 138.7 224 37.1
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 7.0e-31 138.3 219 41.1
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 7.0e-31 138.3 228 38.2
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 7.0e-31 138.3 220 38.6
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 2.0e-30 136.7 226 37.6
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 4.5e-30 135.6 217 37.3
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 1.3e-29 134.0 218 39.0
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 1.3e-29 134.0 223 37.2
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.3e-29 134.0 226 37.6
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 1.7e-29 133.7 237 36.7
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 5.0e-29 132.1 223 37.2
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 5.0e-29 132.1 190 41.1
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 1.5e-28 130.6 221 35.3
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 2.5e-28 129.8 220 37.3
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 3.2e-28 129.4 206 39.8
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 3.2e-28 129.4 210 38.6
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 4.2e-28 129.0 223 37.2
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 2.7e-27 126.3 220 36.8
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 3.6e-27 125.9 232 34.1
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 6.1e-27 125.2 220 38.6
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 8.0e-27 124.8 210 36.7
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 1.0e-26 124.4 222 37.8
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 1.8e-26 123.6 222 37.8
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 1.8e-26 123.6 221 35.7
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 2.3e-26 123.2 223 36.8
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 3.0e-26 122.9 233 36.9
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 4.0e-26 122.5 224 37.1
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 6.8e-26 121.7 206 37.4
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 4.4e-25 119.0 236 34.3
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 5.7e-25 118.6 250 32.0
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 7.5e-25 118.2 212 38.7
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 9.8e-25 117.9 226 39.4
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.3e-24 117.5 209 37.3
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 1.7e-24 117.1 244 36.1
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 2.8e-24 116.3 192 38.5
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 8.3e-24 114.8 215 36.3
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 8.3e-24 114.8 220 35.9
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 3.1e-23 112.8 213 36.2
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 4.1e-23 112.5 211 37.9
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 5.4e-23 112.1 196 37.8
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 9.1e-23 111.3 224 33.0
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 9.1e-23 111.3 207 34.8
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 9.1e-23 111.3 208 36.1
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 1.2e-22 110.9 181 42.0
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 1.6e-22 110.5 226 35.8
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 7.7e-22 108.2 208 36.5
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.0e-21 107.8 202 35.6
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 2.9e-21 106.3 206 35.9
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 2.9e-21 106.3 207 36.7
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 6.5e-21 105.1 218 32.6
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 1.5e-20 104.0 208 37.5
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 7.2e-20 101.7 191 38.7
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 1.6e-19 100.5 244 31.1
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 4.7e-19 99.0 275 31.6
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 4.7e-19 99.0 177 37.3
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 2.6e-17 93.2 245 31.0
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 3.4e-17 92.8 139 41.0
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 9.8e-17 91.3 224 32.6
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 1.3e-16 90.9 224 33.0
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 6.3e-16 88.6 188 32.4
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 8.3e-16 88.2 119 40.3
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 2.4e-15 86.7 216 31.9
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 1.6e-14 84.0 221 29.4
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 4.5e-14 82.4 74 56.8
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 1.3e-13 80.9 64 51.6
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 5.0e-13 79.0 251 28.3
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 8.6e-13 78.2 92 48.9
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.5e-12 77.4 80 47.5
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 2.5e-12 76.6 161 36.0
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 3.6e-11 72.8 178 29.8
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 3.6e-11 72.8 123 36.6
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 1.4e-10 70.9 56 55.4
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 1.4e-10 70.9 56 55.4
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 1.8e-10 70.5 226 27.4
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 6.8e-10 68.6 205 27.3
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 5.7e-09 65.5 98 38.8
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 5.7e-09 65.5 63 42.9
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 5.7e-09 65.5 81 39.5
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 3.7e-08 62.8 132 33.3
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 4.9e-08 62.4 72 41.7
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 1.8e-07 60.5 96 39.6
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 3.5e-06 56.2 167 28.1


User provided reference genes

Program Settings