Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 0.0e+00 1735.7 889 100.0
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 0.0e+00 1369.0 904 82.5
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 0.0e+00 1369.0 904 82.5
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 0.0e+00 1278.8 901 77.9
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 0.0e+00 1273.5 901 77.6
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 0.0e+00 1259.6 910 76.6
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 2.9e-304 1048.5 945 65.5
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 4.6e-294 1014.6 953 64.3
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 5.1e-285 984.6 950 63.9
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 4.5e-273 944.9 946 61.7
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 7.7e-273 944.1 962 61.2
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 3.5e-265 918.7 932 59.9
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 2.9e-256 889.0 928 61.4
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 2.1e-246 856.3 928 57.2
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 1.3e-235 820.5 927 55.9
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 4.5e-233 812.0 882 56.9
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 1.0e-216 757.7 916 53.2
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 1.0e-216 757.7 916 53.2
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 6.8e-213 745.0 925 55.5
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 1.2e-212 744.2 925 55.4
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 8.4e-203 711.4 919 54.5
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 2.8e-190 669.8 928 51.8
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 1.8e-189 667.2 928 51.8
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 1.5e-119 434.9 1062 37.2
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 3.4e-111 407.1 921 37.5
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 1.2e-26 126.3 188 40.4
THA.LOC104803312 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 3.3e-26 124.8 206 42.7
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 5.9e-23 114.0 246 31.7
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 5.9e-23 114.0 490 26.3
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 7.2e-21 107.1 472 25.2
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 7.2e-21 107.1 456 25.7
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 1.2e-20 106.3 177 34.5
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.6e-20 105.9 574 25.4
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 8.0e-20 103.6 483 25.7
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 8.0e-20 103.6 231 32.5
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 1.0e-19 103.2 307 29.6
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 4.0e-19 101.3 328 25.9
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 5.2e-19 100.9 610 24.3
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 4.4e-18 97.8 217 34.6
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 5.7e-18 97.4 435 26.0
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 8.3e-17 93.6 335 27.8
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 2.4e-16 92.0 537 25.0
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 3.1e-16 91.7 385 28.8
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 2.0e-15 89.0 535 26.0
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 4.5e-15 87.8 209 31.1
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 5.9e-15 87.4 349 26.6
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 1.0e-14 86.7 344 26.5
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 1.0e-14 86.7 231 28.6
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 1.3e-14 86.3 316 27.5
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 1.7e-14 85.9 245 28.6
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 2.2e-14 85.5 376 27.4
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 2.2e-14 85.5 245 28.6
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.9e-14 85.1 231 30.3
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 5.0e-14 84.3 174 33.9
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 5.0e-14 84.3 287 30.7
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 6.5e-14 84.0 350 27.4
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 6.5e-14 84.0 350 26.6
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 6.5e-14 84.0 199 32.2
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 8.5e-14 83.6 245 26.5
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 8.5e-14 83.6 225 29.3
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 8.5e-14 83.6 209 28.7
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 1.1e-13 83.2 177 32.2
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.5e-13 82.8 313 24.9
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 1.9e-13 82.4 350 26.9
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 2.5e-13 82.0 235 30.2
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 4.2e-13 81.3 203 31.0
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 7.2e-13 80.5 79 53.2
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 7.2e-13 80.5 274 25.5
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 9.5e-13 80.1 196 31.1
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 9.5e-13 80.1 205 32.7
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 1.2e-12 79.7 60 61.7
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 1.2e-12 79.7 260 28.5
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 1.6e-12 79.3 352 26.1
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 2.7e-12 78.6 76 53.9
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 3.6e-12 78.2 196 30.1
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 3.6e-12 78.2 488 26.0
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 6.1e-12 77.4 197 28.4
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 8.0e-12 77.0 159 28.9
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 8.0e-12 77.0 200 27.0
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 8.0e-12 77.0 219 30.6
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 1.0e-11 76.6 210 29.0
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 1.0e-11 76.6 351 28.2
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 1.4e-11 76.3 189 28.6
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 1.4e-11 76.3 302 26.5
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 1.8e-11 75.9 501 23.8
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 1.8e-11 75.9 476 24.6
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 1.8e-11 75.9 191 29.8
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 2.3e-11 75.5 513 24.8
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 4.0e-11 74.7 341 25.5
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 5.2e-11 74.3 195 30.8
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 5.2e-11 74.3 196 29.6
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 6.8e-11 73.9 368 25.0
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 8.8e-11 73.6 424 22.6
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 1.2e-10 73.2 205 27.8
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 1.5e-10 72.8 194 26.8
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 2.0e-10 72.4 324 24.7
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 2.0e-10 72.4 288 25.3
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 2.6e-10 72.0 189 27.0
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 4.4e-10 71.2 165 33.3
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 4.4e-10 71.2 202 29.2
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 5.7e-10 70.9 287 25.8
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 7.5e-10 70.5 310 25.5
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 7.5e-10 70.5 618 23.5
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 1.3e-09 69.7 244 28.3
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 1.3e-09 69.7 167 33.5
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 1.3e-09 69.7 190 31.1
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 1.7e-09 69.3 679 22.7
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 2.2e-09 68.9 214 26.6
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 3.7e-09 68.2 234 26.5
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 1.1e-08 66.6 205 26.3
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.4e-08 66.2 55 56.4
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 1.4e-08 66.2 55 56.4
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 1.8e-08 65.9 239 26.4
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 3.1e-08 65.1 477 22.9
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 5.4e-08 64.3 212 27.8
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 5.4e-08 64.3 228 26.3
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 7.0e-08 63.9 67 47.8
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 9.2e-08 63.5 178 28.1
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 1.6e-07 62.8 197 26.9
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 1.6e-07 62.8 58 51.7
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 2.0e-07 62.4 52 53.8
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 3.5e-07 61.6 529 22.9
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 1.7e-06 59.3 440 23.6
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 3.8e-06 58.2 296 22.3
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 6.6e-06 57.4 344 24.7


User provided reference genes

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