Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09562 Brassica carinata HOM05D004767 ORTHO05D005674 3.2e-182 641.7 350 100.0
BcaC02g11487 Brassica carinata HOM05D004767 ORTHO05D005674 7.2e-174 614.0 350 96.3
C04p14860 Brassica napus HOM05D004767 ORTHO05D005674 3.6e-173 611.7 350 96.0
BolC4t23059H Brassica oleracea HOM05D004767 ORTHO05D005674 1.3e-172 609.8 350 95.7
A05p11370 Brassica napus HOM05D004767 ORTHO05D005674 1.8e-172 609.4 350 95.7
BraA05t20086Z Brassica rapa HOM05D004767 ORTHO05D005674 1.8e-172 609.4 350 95.7
Sp4g16550 Schrenkiella parvula HOM05D004767 ORTHO05D005674 1.3e-167 593.2 352 93.2
BcaB06g28745 Brassica carinata HOM05D004767 ORTHO05D005674 4.2e-166 588.2 351 92.3
BraA04t18130Z Brassica rapa HOM05D004767 ORTHO05D005674 1.0e-164 583.6 306 94.4
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 1.8e-164 582.8 306 94.1
AT2G34260 Arabidopsis thaliana HOM05D004767 ORTHO05D005674 6.9e-161 570.9 312 90.7
Carub.0004s1593 Capsella rubella HOM05D004767 ORTHO05D005674 9.1e-161 570.5 312 90.1
CARHR128360 Cardamine hirsuta HOM05D004767 ORTHO05D005674 2.2e-159 565.8 312 89.1
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 4.8e-154 548.1 353 82.4
THA.LOC104816808 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 4.7e-149 531.6 355 75.2
Thhalv10016919m.g Eutrema salsugineum HOM05D004767 ORTHO05D005674 5.2e-148 528.1 351 84.6
THA.LOC104820618 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 1.7e-146 523.1 352 73.6
AL4G30210 Arabidopsis lyrata HOM05D004767 ORTHO05D005674 1.8e-140 503.1 310 81.0
MSTRG.16702 Avicennia marina HOM05D004767 ORTHO05D005674 1.5e-126 456.8 311 71.4
Cpa.g.sc365.7 Carica papaya HOM05D004767 ORTHO05D005674 2.1e-125 453.0 307 71.7
Lalb_Chr05g0214971 Lupinus albus HOM05D004767 ORTHO05D005674 1.0e-124 450.7 309 70.6
Glyma.10G129800 Glycine max HOM05D004767 ORTHO05D005674 1.8e-124 449.9 312 69.6
PGSC0003DMG400003462 Solanum tuberosum HOM05D004767 ORTHO05D005674 2.3e-124 449.5 310 69.0
Oeu010411.1 Olea europaea HOM05D004767 ORTHO05D005674 4.0e-124 448.7 308 71.1
SGA_v2.0_scaffold108G30887 Striga asiatica HOM05D004767 ORTHO05D005674 4.0e-124 448.7 310 70.6
Lalb_Chr09g0324851 Lupinus albus HOM05D004767 ORTHO05D005674 8.9e-124 447.6 298 71.1
Solyc02g038750.3 Solanum lycopersicum HOM05D004767 ORTHO05D005674 8.9e-124 447.6 352 61.4
Peaxi162Scf00431g00415 Petunia axillaris HOM05D004767 ORTHO05D005674 1.2e-123 447.2 310 68.7
Sopen02g012180 Solanum pennellii HOM05D004767 ORTHO05D005674 1.5e-123 446.8 352 61.4
TAR625G0043 Trochodendron aralioides HOM05D004767 ORTHO05D005674 2.6e-123 446.0 307 70.0
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 3.4e-123 445.7 307 71.0
Thecc.01G130700 Theobroma cacao HOM05D004767 ORTHO05D005674 5.8e-123 444.9 311 69.5
arahy.Tifrunner.gnm1.ann1.AK1NBZ Arachis hypogaea HOM05D004767 ORTHO05D005674 9.8e-123 444.1 298 72.1
Gorai.012G034000 Gossypium raimondii HOM05D004767 ORTHO05D005674 9.8e-123 444.1 313 69.6
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 9.8e-123 444.1 297 70.4
Eucgr.H00074 Eucalyptus grandis HOM05D004767 ORTHO05D005674 1.3e-122 443.7 311 71.4
Gohir.D04G022900 Gossypium hirsutum HOM05D004767 ORTHO05D005674 1.7e-122 443.4 306 70.3
CANSAT54G2063 Cannabis sativa HOM05D004767 ORTHO05D005674 2.2e-122 443.0 313 67.7
Glyma.12G025800 Glycine max HOM05D004767 ORTHO05D005674 2.2e-122 443.0 298 70.8
QL10p048860 Quercus lobata HOM05D004767 ORTHO05D005674 3.7e-122 442.2 297 71.0
Potri.017G120100 Populus trichocarpa HOM05D004767 ORTHO05D005674 4.9e-122 441.8 312 67.3
Gohir.A05G385700 Gossypium hirsutum HOM05D004767 ORTHO05D005674 8.3e-122 441.0 306 69.9
Nn6g31627 Nelumbo nucifera HOM05D004767 ORTHO05D005674 8.3e-122 441.0 302 71.2
TPR.G18695 Trifolium pratense HOM05D004767 ORTHO05D005674 8.3e-122 441.0 304 69.4
MD12G1063000 Malus domestica HOM05D004767 ORTHO05D005674 1.1e-121 440.7 312 68.9
Hund21306 Selenicereus undatus HOM05D004767 ORTHO05D005674 1.1e-121 440.7 300 72.0
Ca_02533_v3 Cicer arietinum L. HOM05D004767 ORTHO05D005674 1.4e-121 440.3 302 69.2
Psat1g185000 Pisum sativum HOM05D004767 ORTHO05D005674 1.4e-121 440.3 301 70.8
Manes.02G116500 Manihot esculenta HOM05D004767 ORTHO05D005674 2.4e-121 439.5 310 69.4
Medtr4g077783 Medicago truncatula HOM05D004767 ORTHO05D005674 2.4e-121 439.5 301 69.8
Medtr4g111810 Medicago truncatula HOM05D004767 ORTHO05D005674 3.2e-121 439.1 301 70.1
TPR.G26773 Trifolium pratense HOM05D004767 ORTHO05D005674 3.2e-121 439.1 301 70.4
Duzib264G0649 Durio zibethinus HOM05D004767 ORTHO05D005674 4.1e-121 438.7 299 70.9
TAR381G0314 Trochodendron aralioides HOM05D004767 ORTHO05D005674 5.4e-121 438.3 298 71.1
CiPaw.03G094400 Carya illinoinensis HOM05D004767 ORTHO05D005674 7.0e-121 438.0 304 70.1
Prupe.7G070600 Prunus persica HOM05D004767 ORTHO05D005674 1.2e-120 437.2 300 70.3
VMungo1127G0990 Vigna mungo HOM05D004767 ORTHO05D005674 1.6e-120 436.8 297 69.4
FAN02G2069 Fragaria x ananassa HOM05D004767 ORTHO05D005674 3.5e-120 435.6 298 70.5
arahy.Tifrunner.gnm1.ann1.BE8FK9 Arachis hypogaea HOM05D004767 ORTHO05D005674 4.6e-120 435.3 345 63.2
MD14G1063600 Malus domestica HOM05D004767 ORTHO05D005674 4.6e-120 435.3 313 68.7
Nitab4.5_0000235g0120 Nicotiana tabacum HOM05D004767 ORTHO05D005674 4.6e-120 435.3 314 67.8
Phvul.011G028400 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 4.6e-120 435.3 297 69.0
Cc07_g12190 Coffea canephora HOM05D004767 ORTHO05D005674 6.0e-120 434.9 289 74.0
FAN09G1063 Fragaria x ananassa HOM05D004767 ORTHO05D005674 7.8e-120 434.5 304 69.7
FAN14G1715 Fragaria x ananassa HOM05D004767 ORTHO05D005674 1.0e-119 434.1 298 70.1
unitig_61.g26025 Utricularia gibba HOM05D004767 ORTHO05D005674 1.0e-119 434.1 300 69.0
FvH4_6g22900 Fragaria vesca HOM05D004767 ORTHO05D005674 1.7e-119 433.3 298 70.1
RcHm_v2.0_Chr3g0480691 Rosa chinensis HOM05D004767 ORTHO05D005674 3.0e-119 432.6 304 69.7
Lj1g0021179 Lotus japonicus HOM05D004767 ORTHO05D005674 6.6e-119 431.4 300 68.3
Nitab4.5_0006401g0010 Nicotiana tabacum HOM05D004767 ORTHO05D005674 8.6e-119 431.0 314 67.5
GSVIVG01017458001 Vitis vinifera HOM05D004767 ORTHO05D005674 8.6e-119 431.0 299 70.9
AUR62012542 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.2e-117 427.2 289 73.0
EL10Ac8g19950 Beta vulgaris HOM05D004767 ORTHO05D005674 2.8e-117 426.0 299 69.2
EL10Ac3g07307 Beta vulgaris HOM05D004767 ORTHO05D005674 3.6e-117 425.6 299 68.6
GSVIVG01020926001 Vitis vinifera HOM05D004767 ORTHO05D005674 3.6e-117 425.6 299 69.9
TWI73G0530 Tripterygium wilfordii HOM05D004767 ORTHO05D005674 4.7e-117 425.2 299 69.2
COL.COLO4_35713 Corchorus olitorius HOM05D004767 ORTHO05D005674 6.2e-117 424.9 300 68.7
DCAR_019301 Daucus carota HOM05D004767 ORTHO05D005674 8.0e-117 424.5 319 67.7
HanXRQChr15g0489741 Helianthus annuus HOM05D004767 ORTHO05D005674 5.2e-116 421.8 305 66.6
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 1.5e-115 420.2 298 67.8
Sed0020265 Sechium edule HOM05D004767 ORTHO05D005674 2.0e-115 419.9 301 68.8
Sed0012135 Sechium edule HOM05D004767 ORTHO05D005674 3.4e-115 419.1 292 70.9
Migut.B00408 Erythranthe guttata HOM05D004767 ORTHO05D005674 5.8e-115 418.3 298 66.4
PSO017G2362 Papaver somniferum HOM05D004767 ORTHO05D005674 5.8e-115 418.3 305 66.6
Aqoxy6G02991 Aquilegia oxysepala HOM05D004767 ORTHO05D005674 3.7e-114 415.6 309 65.4
Sc03g0004110 Simmondsia chinensis HOM05D004767 ORTHO05D005674 3.7e-114 415.6 299 67.6
ECA233G4977 Erigeron canadensis HOM05D004767 ORTHO05D005674 8.3e-114 414.5 301 67.1
Lj4C240T4 Lonicera japonica HOM05D004767 ORTHO05D005674 8.3e-114 414.5 298 67.1
CDE02G0197 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 1.1e-113 414.1 296 67.9
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 2.4e-113 412.9 319 64.9
ClCG10G013460 Citrullus lanatus HOM05D004767 ORTHO05D005674 3.5e-112 409.1 316 63.9
A04p26260 Brassica napus HOM05D004767 ORTHO05D005674 4.6e-112 408.7 212 94.3
CDE08G0085 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 4.6e-112 408.7 299 67.2
HPP92_003941 Vanilla planifolia HOM05D004767 ORTHO05D005674 3.9e-111 405.6 303 65.0
Psat1g210160 Pisum sativum HOM05D004767 ORTHO05D005674 1.5e-107 393.7 272 70.6
COL.COLO4_38041 Corchorus olitorius HOM05D004767 ORTHO05D005674 3.4e-107 392.5 265 70.2
SalBow6G2358 Salvia bowleyana HOM05D004767 ORTHO05D005674 5.8e-107 391.7 364 58.5
SalBow6G5765 Salvia bowleyana HOM05D004767 ORTHO05D005674 2.2e-106 389.8 363 58.1
TAR625G0966 Trochodendron aralioides HOM05D004767 ORTHO05D005674 3.2e-105 386.0 280 67.1
Lsat_1_v5_gn_8_114040 Lactuca sativa HOM05D004767 ORTHO05D005674 1.6e-104 383.6 308 61.7
Os07g0660700 Oryza sativa ssp. japonica HOM05D004767 ORTHO05D005674 3.5e-104 382.5 290 63.1
MELO3C026614.2 Cucumis melo HOM05D004767 ORTHO05D005674 3.0e-103 379.4 293 63.5
SalBow2G0232 Salvia bowleyana HOM05D004767 ORTHO05D005674 3.0e-103 379.4 297 65.0
PSO170G0853 Papaver somniferum HOM05D004767 ORTHO05D005674 8.6e-103 377.9 305 61.3
Zm00001eb349300 Zea mays HOM05D004767 ORTHO05D005674 7.3e-102 374.8 304 58.9
Rhsim08G0026000 Rhododendron simsii HOM05D004767 ORTHO05D005674 2.1e-101 373.2 282 67.0
Actinidia28754 Actinidia chinensis HOM05D004767 ORTHO05D005674 4.7e-101 372.1 255 69.8
Hma1.2p1_0085F.1_g044390 Hydrangea macrophylla HOM05D004767 ORTHO05D005674 6.2e-101 371.7 321 59.8
RcHm_v2.0_Chr4g0410631 Rosa chinensis HOM05D004767 ORTHO05D005674 1.8e-100 370.2 305 62.0
vmacro18476 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 4.2e-97 359.0 298 62.8
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 7.8e-96 354.8 338 54.1
Mapoly0040s0029 Marchantia polymorpha HOM05D004767 ORTHO05D005674 2.8e-93 346.3 301 55.5
Haze_03669 Corylus avellana HOM05D004767 ORTHO05D005674 6.9e-92 341.7 310 59.4
AagrBONN_evm.TU.Sc2ySwM_344.1647 Anthoceros agrestis HOM05D004767 ORTHO05D005674 7.6e-91 338.2 296 54.7
Dinv40217 Davidia involucrata HOM05D004767 ORTHO05D005674 7.1e-89 331.6 230 70.4
Glyma.11G099900 Glycine max HOM05D004767 ORTHO05D005674 9.3e-89 331.3 298 56.0
CsaV3_3G043180 Cucumis sativus L. HOM05D004767 ORTHO05D005674 1.5e-86 323.9 310 53.5
AUR62014654 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.9e-86 323.6 300 57.0
Phvul.005G015600 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 4.0e-84 315.8 302 55.0
Phvul.005G015700 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 4.0e-84 315.8 303 55.1
CSS0049016 Camellia sinensis var. sinensis HOM05D004767 ORTHO05D005674 2.6e-83 313.2 290 56.9
AUR62044118 Chenopodium quinoa HOM05D004767 ORTHO05D005674 2.4e-81 306.6 289 57.1
Ah.09g236950 Amaranthus hybridus HOM05D004767 ORTHO05D005674 4.2e-81 305.8 307 53.1
SMO364G0336 Selaginella moellendorffii HOM05D004767 ORTHO05D005674 1.6e-80 303.9 315 50.5
Cfa006688 Carpinus fangiana HOM05D004767 ORTHO05D005674 7.9e-80 301.6 266 60.2
CBR_g37537 Chara braunii HOM05D004767 ORTHO05D005674 4.8e-69 265.8 267 47.9
MCO07G146 Micromonas commoda HOM05D004767 ORTHO05D005674 4.1e-60 236.1 296 42.6
Glyma.20G080900 Glycine max HOM05D004767 ORTHO05D005674 9.1e-52 208.4 142 70.4
Medtr1g076780 Medicago truncatula HOM05D004767 ORTHO05D005674 9.1e-52 208.4 156 65.4
SHI13610 Sapria himalayana HOM05D004767 ORTHO05D005674 1.2e-51 208.0 235 46.0
SEGI_28078 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 2.2e-45 187.2 146 62.3
BolC4t27833H Brassica oleracea HOM05D004767 ORTHO05D005674 2.8e-45 186.8 248 50.4
ATR0680G041 Amborella trichopoda HOM05D004767 ORTHO05D005674 1.8e-44 184.1 155 58.1
Cre02.g113250 Chlamydomonas reinhardtii HOM05D004767 ORTHO05D005674 2.9e-42 176.8 245 40.8
PRCOL_00000722 Prasinoderma coloniale HOM05D004767 ORTHO05D005674 8.0e-40 168.7 292 35.3
Oeu036465.1 Olea europaea HOM05D004767 ORTHO05D005674 1.1e-38 164.9 283 39.6
Psat6g227720 Pisum sativum HOM05D004767 ORTHO05D005674 9.7e-38 161.8 145 57.2
Pp3c5_17020 Physcomitrium patens HOM05D004767 ORTHO05D005674 1.4e-36 157.9 303 34.7
Psat6g227760 Pisum sativum HOM05D004767 ORTHO05D005674 5.9e-35 152.5 140 57.1
Phvul.011G028501 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.2e-32 144.8 112 62.5
QL07p001807 Quercus lobata HOM05D004767 ORTHO05D005674 1.2e-30 138.3 153 46.4
ATR0231G001 Amborella trichopoda HOM05D004767 ORTHO05D005674 1.2e-22 111.7 83 67.5
Sabra17G0099200 Salix brachista HOM05D004767 ORTHO05D005674 1.3e-21 108.2 78 65.4
SEGI_20710 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 5.9e-19 99.4 96 55.2
SEGI_27353 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 1.1e-12 78.6 62 59.7
Lsat_1_v5_gn_6_103760 Lactuca sativa HOM05D004767 ORTHO05D005674 2.7e-11 73.9 66 56.1
Phvul.011G028300 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 2.7e-11 73.9 46 69.6
vmacro07517 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 5.9e-11 72.8 52 67.3
Cc11_g01130 Coffea canephora HOM05D004767 ORTHO05D005674 1.0e-10 72.0 42 76.2
GSVIVG01020113001 Vitis vinifera HOM05D004767 ORTHO05D005674 1.1e-09 68.6 53 66.0
Haze_27084 Corylus avellana HOM05D002303 ORTHO05D007639 4.3e-09 66.6 287 24.0
Actinidia09820 Actinidia chinensis HOM05D004767 ORTHO05D005674 9.5e-09 65.5 56 55.4
Cc11_g01140 Coffea canephora HOM05D004767 ORTHO05D005674 1.5e-06 58.2 54 51.9
Gohir.D06G210133 Gossypium hirsutum HOM05D000836 ORTHO05D000709 1.5e-06 58.2 251 23.5
Gorai.010G256300 Gossypium raimondii HOM05D000836 ORTHO05D000709 1.5e-06 58.2 251 23.5
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 2.6e-06 57.4 160 24.4
Cfa023113 Carpinus fangiana HOM05D005323 ORTHO05D017328 9.8e-06 55.5 235 21.7


User provided reference genes

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