Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09560 Brassica carinata HOM05D008719 ORTHO05D010898 2.6e-127 458.8 240 100.0
A05p11350 Brassica napus HOM05D008719 ORTHO05D010898 6.8e-83 311.2 244 74.2
Thhalv10017155m.g Eutrema salsugineum HOM05D008719 ORTHO05D010898 1.8e-75 286.6 254 66.9
C04p14710 Brassica napus HOM05D008719 ORTHO05D010898 4.4e-74 282.0 250 68.4
BraA04t18131Z Brassica rapa HOM05D008719 ORTHO05D010898 1.3e-65 253.8 245 64.9
C04p63660 Brassica napus HOM05D008719 ORTHO05D010898 1.7e-65 253.4 245 64.9
Carub.0004s1595 Capsella rubella HOM05D008719 ORTHO05D010898 4.9e-65 251.9 262 62.2
A04p26270 Brassica napus HOM05D008719 ORTHO05D010898 6.4e-65 251.5 245 64.1
BcaB06g28746 Brassica carinata HOM05D008719 ORTHO05D010898 4.1e-64 248.8 255 64.3
BolC4t27834H Brassica oleracea HOM05D008719 ORTHO05D010898 7.1e-64 248.1 244 63.5
Sp4g16580 Schrenkiella parvula HOM05D008719 ORTHO05D010898 1.7e-62 243.4 255 60.4
CARHR128380 Cardamine hirsuta HOM05D008719 ORTHO05D010898 1.6e-60 236.9 246 61.4
AT2G34310 Arabidopsis thaliana HOM05D008719 ORTHO05D010898 1.1e-59 234.2 255 59.6
AL4G30240 Arabidopsis lyrata HOM05D008719 ORTHO05D010898 5.8e-58 228.4 255 57.3
Sp1g25470 Schrenkiella parvula HOM05D008719 ORTHO05D010898 7.9e-39 164.9 260 46.9
CARHR028920 Cardamine hirsuta HOM05D008719 ORTHO05D010898 7.4e-37 158.3 252 46.4
Thhalv10008596m.g Eutrema salsugineum HOM05D008719 ORTHO05D010898 1.6e-36 157.1 261 46.7
BcaC02g11497 Brassica carinata HOM05D008719 ORTHO05D010898 1.7e-33 147.1 241 45.6
BcaC01g00117 Brassica carinata HOM05D008719 ORTHO05D010898 2.5e-32 143.3 246 43.1
AL1G43370 Arabidopsis lyrata HOM05D008719 ORTHO05D010898 7.9e-31 138.3 257 44.4
Carub.0001s2776 Capsella rubella HOM05D008719 ORTHO05D010898 6.7e-30 135.2 256 43.8
AT1G29530 Arabidopsis thaliana HOM05D008719 ORTHO05D010898 8.7e-30 134.8 249 44.2
A09p36830 Brassica napus HOM05D008719 ORTHO05D010898 2.5e-29 133.3 252 42.9
BraA09t39201Z Brassica rapa HOM05D008719 ORTHO05D010898 2.5e-29 133.3 252 42.9
C03p75980 Brassica napus HOM05D008719 ORTHO05D010898 5.7e-29 132.1 212 44.3
BolC3t19849H Brassica oleracea HOM05D008719 ORTHO05D010898 5.7e-29 132.1 212 44.3
A08p25000 Brassica napus HOM05D008719 ORTHO05D010898 6.9e-27 125.2 249 40.6
BraA08t34455Z Brassica rapa HOM05D008719 ORTHO05D010898 6.9e-27 125.2 249 40.6
Aa31LG6G6070 Aethionema arabicum HOM05D008719 ORTHO05D010898 3.4e-26 122.9 339 34.2
BcaB03g12165 Brassica carinata HOM05D008719 ORTHO05D010898 3.2e-24 116.3 256 43.0
BcaB07g32545 Brassica carinata HOM05D008719 ORTHO05D010898 1.2e-23 114.4 249 38.2
THA.LOC104820622 Tarenaya hassleriana HOM05D008719 ORTHO05D010898 4.6e-23 112.5 245 40.4
C07p16190 Brassica napus HOM05D008719 ORTHO05D010898 2.2e-20 103.6 249 38.6
C05p28330 Brassica napus HOM05D008719 ORTHO05D010898 2.4e-19 100.1 246 35.4
BcaC05g26977 Brassica carinata HOM05D008719 ORTHO05D010898 5.3e-19 99.0 246 35.0
BolC5t31555H Brassica oleracea HOM05D008719 ORTHO05D010898 5.3e-19 99.0 246 35.0
BcaB03g13879 Brassica carinata HOM05D008719 ORTHO05D010898 9.1e-19 98.2 215 40.5
THA.LOC104814270 Tarenaya hassleriana HOM05D008719 ORTHO05D010898 1.2e-18 97.8 244 36.5
BolC7t42112H Brassica oleracea HOM05D008719 ORTHO05D010898 1.3e-17 94.4 211 38.4
BraA07t28855Z Brassica rapa HOM05D008719 ORTHO05D010898 7.2e-16 88.6 219 37.0
A07p10610 Brassica napus HOM05D008719 ORTHO05D010898 2.6e-13 80.1 261 34.5
BraA03t11165Z Brassica rapa HOM05D008719 ORTHO05D010898 2.4e-11 73.6 86 61.6
A03p19070 Brassica napus HOM05D008719 ORTHO05D010898 3.1e-11 73.2 86 60.5
Ciclev10017480m.g Citrus clementina HOM05D009852 ORTHO05D009761 2.9e-09 66.6 300 28.7
Glyma.15G195700 Glycine max HOM05D009013 ORTHO05D009761 5.0e-09 65.9 316 30.4
ClCG01G024180 Citrullus lanatus HOM05D022667 ORTHO05D009761 6.5e-09 65.5 284 33.1
Glyma.13G051300 Glycine max HOM05D009013 ORTHO05D009761 1.4e-08 64.3 44 68.2
MD05G1292200 Malus domestica HOM05D014736 ORTHO05D009761 1.4e-08 64.3 176 33.0
FvH4_3g06440 Fragaria vesca HOM05D014736 ORTHO05D009761 4.2e-08 62.8 59 52.5
FAN11G2258 Fragaria x ananassa HOM05D014736 ORTHO05D009761 4.2e-08 62.8 59 52.5
FAN25G1841 Fragaria x ananassa HOM05D014736 ORTHO05D009761 5.5e-08 62.4 59 52.5
CsaV3_6G051330 Cucumis sativus L. HOM05D022667 ORTHO05D009761 7.2e-08 62.0 278 33.1
QL05p060720 Quercus lobata HOM05D009013 ORTHO05D009761 9.4e-08 61.6 93 46.2
MD10G1268000 Malus domestica HOM05D014736 ORTHO05D009761 1.6e-07 60.8 114 40.4
CiPaw.09G129900 Carya illinoinensis HOM05D009013 ORTHO05D009761 2.1e-07 60.5 94 45.7
Phvul.009G214600 Phaseolus vulgaris HOM05D009013 ORTHO05D009761 2.7e-07 60.1 328 29.9
Thecc.06G158200 Theobroma cacao HOM05D009852 ORTHO05D009761 2.7e-07 60.1 138 39.1
MELO3C007172.2 Cucumis melo HOM05D022667 ORTHO05D009761 6.1e-07 58.9 283 31.4
Glyma.09G085700 Glycine max HOM05D009013 ORTHO05D009761 6.1e-07 58.9 224 30.4
arahy.Tifrunner.gnm1.ann1.3YWF5K Arachis hypogaea HOM05D009013 ORTHO05D009761 2.3e-06 57.0 59 49.2
arahy.Tifrunner.gnm1.ann1.5V604V Arachis hypogaea HOM05D009013 ORTHO05D009761 2.3e-06 57.0 59 49.2
Lj6g0000102 Lotus japonicus HOM05D009013 ORTHO05D009761 2.3e-06 57.0 92 43.5
Haze_05479 Corylus avellana HOM05D009013 ORTHO05D009761 6.7e-06 55.5 124 42.7
COL.COLO4_22804 Corchorus olitorius HOM05D009852 ORTHO05D009761 8.8e-06 55.1 128 39.1


User provided reference genes

Program Settings