Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09535 Brassica carinata HOM05D007099 ORTHO05D009081 1.0e-82 310.1 158 100.0
A05p11160 Brassica napus HOM05D007099 ORTHO05D009081 2.2e-69 265.8 158 89.2
BraA05t20062Z Brassica rapa HOM05D007099 ORTHO05D009081 2.2e-69 265.8 158 89.2
Sp4g16780 Schrenkiella parvula HOM05D007099 ORTHO05D009081 2.8e-69 265.4 170 84.1
BcaC02g11514 Brassica carinata HOM05D007099 ORTHO05D009081 5.9e-67 257.7 161 86.3
C04p14510 Brassica napus HOM05D007099 ORTHO05D009081 5.9e-67 257.7 161 86.3
BolC4t23034H Brassica oleracea HOM05D007099 ORTHO05D009081 5.9e-67 257.7 161 86.3
A04p26440 Brassica napus HOM05D007099 ORTHO05D009081 5.0e-66 254.6 158 85.4
BraA04t18148Z Brassica rapa HOM05D007099 ORTHO05D009081 5.0e-66 254.6 158 85.4
BcaB06g28779 Brassica carinata HOM05D007099 ORTHO05D009081 2.5e-65 252.3 162 84.6
C04p63850 Brassica napus HOM05D007099 ORTHO05D009081 3.2e-65 251.9 158 84.8
Thhalv10017324m.g Eutrema salsugineum HOM05D007099 ORTHO05D009081 5.1e-63 244.6 171 79.5
BcaB02g09534 Brassica carinata HOM05D007099 ORTHO05D009081 9.7e-62 240.4 150 87.3
BolC4t27852H Brassica oleracea HOM05D007099 ORTHO05D009081 9.7e-62 240.4 158 82.9
Carub.0004s1619 Capsella rubella HOM05D007099 ORTHO05D009081 9.1e-60 233.8 166 78.3
AL4G30490 Arabidopsis lyrata HOM05D007099 ORTHO05D009081 1.2e-59 233.4 165 77.0
AT2G34520 Arabidopsis thaliana HOM05D007099 ORTHO05D009081 7.2e-57 224.2 165 73.9
CARHR128610 Cardamine hirsuta HOM05D007099 ORTHO05D009081 2.1e-56 222.6 165 74.5
Aa31LG1G28210 Aethionema arabicum HOM05D007099 ORTHO05D009081 1.4e-36 156.8 144 61.8
COL.COLO4_06718 Corchorus olitorius HOM05D007099 ORTHO05D009081 3.1e-36 155.6 131 62.6
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 9.2e-36 154.1 98 77.6
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 9.2e-36 154.1 98 77.6
THA.LOC104825605 Tarenaya hassleriana HOM05D007099 ORTHO05D009081 3.5e-35 152.1 98 75.5
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 5.0e-34 148.3 98 74.5
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 1.9e-33 146.4 104 69.2
Lalb_Chr00c21g0405211 Lupinus albus HOM05D007099 ORTHO05D009081 4.3e-33 145.2 98 73.5
Lalb_Chr00c21g0405401 Lupinus albus HOM05D007099 ORTHO05D009081 4.3e-33 145.2 98 73.5
Lalb_Chr00c24g0407161 Lupinus albus HOM05D007099 ORTHO05D009081 4.3e-33 145.2 98 73.5
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 9.5e-33 144.1 96 71.9
MD03G1252400 Malus domestica HOM05D007099 ORTHO05D009081 1.2e-32 143.7 96 71.9
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 1.2e-32 143.7 95 71.6
Prupe.2G087000 Prunus persica HOM05D007099 ORTHO05D009081 1.2e-32 143.7 96 72.9
Prupe.2G087700 Prunus persica HOM05D007099 ORTHO05D009081 1.2e-32 143.7 96 72.9
Prupe.8G094900 Prunus persica HOM05D007099 ORTHO05D009081 1.2e-32 143.7 96 72.9
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 1.6e-32 143.3 98 70.4
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 1.6e-32 143.3 96 74.0
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 1.6e-32 143.3 96 74.0
VMungo0647G1684 Vigna mungo HOM05D007099 ORTHO05D009081 1.6e-32 143.3 98 72.4
Rhsim11G0096700 Rhododendron simsii HOM05D007099 ORTHO05D009081 4.7e-32 141.7 117 61.5
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 8.0e-32 141.0 100 69.0
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 8.0e-32 141.0 98 70.4
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 1.0e-31 140.6 97 72.2
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 1.4e-31 140.2 104 66.3
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 1.4e-31 140.2 104 66.3
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 1.4e-31 140.2 98 69.4
Glyma.05G091932 Glycine max HOM05D007099 ORTHO05D009081 1.4e-31 140.2 119 63.0
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 1.4e-31 140.2 98 70.4
RcHm_v2.0_Chr1g0333591 Rosa chinensis HOM05D007099 ORTHO05D009081 1.8e-31 139.8 96 72.9
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 4.0e-31 138.7 97 71.1
FAN06G3861 Fragaria x ananassa HOM05D007099 ORTHO05D009081 8.9e-31 137.5 95 70.5
FAN10G1031 Fragaria x ananassa HOM05D007099 ORTHO05D009081 8.9e-31 137.5 95 70.5
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 1.5e-30 136.7 97 69.1
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 1.5e-30 136.7 97 69.1
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 1.5e-30 136.7 97 69.1
CANSAT56G2898 Cannabis sativa HOM05D007099 ORTHO05D009081 2.6e-30 136.0 96 70.8
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 2.6e-30 136.0 100 66.0
RcHm_v2.0_Chr5g0056441 Rosa chinensis HOM05D007099 ORTHO05D009081 2.6e-30 136.0 96 70.8
FvH4_7g06080 Fragaria vesca HOM05D007099 ORTHO05D009081 3.4e-30 135.6 96 69.8
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 5.7e-30 134.8 123 56.1
Ciclev10022860m.g Citrus clementina HOM05D007099 ORTHO05D009081 5.7e-30 134.8 98 68.4
FAN16G1526 Fragaria x ananassa HOM05D007099 ORTHO05D009081 7.5e-30 134.4 95 68.4
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 1.3e-29 133.7 106 64.2
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 1.3e-29 133.7 100 66.0
DCAR_014524 Daucus carota HOM05D007099 ORTHO05D009081 2.2e-29 132.9 130 56.2
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 3.7e-29 132.1 98 67.3
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 3.7e-29 132.1 98 67.3
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 6.4e-29 131.3 101 62.4
TPR.G27292 Trifolium pratense HOM05D007099 ORTHO05D009081 8.3e-29 131.0 87 73.6
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 2.4e-28 129.4 97 67.0
QL04p041158 Quercus lobata HOM05D007099 ORTHO05D009081 3.2e-28 129.0 96 65.6
QL10p027581 Quercus lobata HOM05D007099 ORTHO05D009081 4.1e-28 128.6 96 64.6
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 1.6e-27 126.7 87 71.3
FAN12G2091 Fragaria x ananassa HOM05D007099 ORTHO05D009081 1.6e-27 126.7 91 67.0
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 1.6e-27 126.7 93 66.7
Peaxi162Scf01092g00115 Petunia axillaris HOM05D007099 ORTHO05D009081 2.0e-27 126.3 88 72.7
HanXRQChr10g0308131 Helianthus annuus HOM05D007099 ORTHO05D009081 2.7e-27 125.9 98 63.3
Lsat_1_v5_gn_9_15021 Lactuca sativa HOM05D007099 ORTHO05D009081 5.9e-27 124.8 98 64.3
PSO541G4216 Papaver somniferum HOM05D007099 ORTHO05D009081 5.9e-27 124.8 97 64.9
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 5.9e-27 124.8 97 63.9
Cfa011223 Carpinus fangiana HOM05D007099 ORTHO05D009081 1.0e-26 124.0 97 63.9
PSO675G8234 Papaver somniferum HOM05D007099 ORTHO05D009081 1.3e-26 123.6 97 63.9
Cfa011224 Carpinus fangiana HOM05D007099 ORTHO05D009081 2.3e-26 122.9 97 63.9
Haze_02608 Corylus avellana HOM05D007099 ORTHO05D009081 3.0e-26 122.5 97 63.9
Gorai.001G161900 Gossypium raimondii HOM05D007099 ORTHO05D009081 5.0e-26 121.7 80 73.8
PSO541G5582 Papaver somniferum HOM05D007099 ORTHO05D009081 5.0e-26 121.7 97 62.9
SHI18971 Sapria himalayana HOM05D007099 ORTHO05D009081 1.1e-25 120.6 93 64.5
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 5.6e-25 118.2 86 66.3
ECA234G1703 Erigeron canadensis HOM05D007099 ORTHO05D009081 7.3e-25 117.9 98 59.2
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 9.5e-25 117.5 92 62.0
PSO675G5170 Papaver somniferum HOM05D007099 ORTHO05D009081 2.1e-24 116.3 97 62.9
FvH4_3g30490 Fragaria vesca HOM05D007099 ORTHO05D009081 8.9e-23 110.9 79 69.6
FAN11G0918 Fragaria x ananassa HOM05D007099 ORTHO05D009081 8.9e-23 110.9 79 69.6
Solyc00g500363.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 3.7e-21 105.5 71 70.4
Nn1g10177 Nelumbo nucifera HOM05D007099 ORTHO05D009081 2.7e-19 99.4 63 76.2
arahy.Tifrunner.gnm1.ann1.BT1F12 Arachis hypogaea HOM05D007099 ORTHO05D009081 6.0e-19 98.2 75 64.0
Gohir.A01G126800 Gossypium hirsutum HOM05D007099 ORTHO05D009081 2.3e-18 96.3 62 72.6
Lalb_Chr11g0070131 Lupinus albus HOM05D007099 ORTHO05D009081 3.9e-18 95.5 63 74.6
Lalb_Chr11g0070211 Lupinus albus HOM05D007099 ORTHO05D009081 3.9e-18 95.5 63 74.6
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 5.0e-18 95.1 70 67.1
SMO134G0293 Selaginella moellendorffii HOM05D007099 ORTHO05D009081 5.0e-18 95.1 93 53.8
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 8.6e-18 94.4 64 71.9
ClCG01G010070 Citrullus lanatus HOM05D007099 ORTHO05D009081 1.9e-17 93.2 105 50.5
Solyc09g050030.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 2.1e-16 89.7 63 68.3
arahy.Tifrunner.gnm1.ann1.HLYH4Q Arachis hypogaea HOM05D007099 ORTHO05D009081 4.7e-16 88.6 70 60.0
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.4e-15 87.0 60 70.0
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 5.2e-15 85.1 57 71.9
Rhsim10G0009600 Rhododendron simsii HOM05D000071 ORTHO05D000029 1.2e-14 84.0 66 63.6
Cre17.g726300 Chlamydomonas reinhardtii HOM05D007099 ORTHO05D009081 4.1e-12 75.5 101 42.6
Nitab4.5_0004300g0130 Nicotiana tabacum HOM05D002864 ORTHO05D007972 5.4e-12 75.1 52 69.2
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 3.5e-11 72.4 49 73.5
Pp3c2_23460 Physcomitrium patens HOM05D007099 ORTHO05D009081 5.1e-10 68.6 53 60.4
Nitab4.5_0000033g0070 Nicotiana tabacum HOM05D007099 ORTHO05D009081 9.5e-09 64.3 48 66.7
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 9.5e-09 64.3 68 52.9
Peaxi162Scf44104g00001 Petunia axillaris HOM05D007099 ORTHO05D009081 1.4e-07 60.5 39 69.2
Lalb_Chr00c21g0405241 Lupinus albus HOM05D007099 ORTHO05D009081 8.9e-07 57.8 37 73.0
GSVIVG01018700001 Vitis vinifera HOM05D007099 ORTHO05D009081 8.9e-07 57.8 42 61.9


User provided reference genes

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