Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09534 Brassica carinata HOM05D007099 ORTHO05D009081 1.2e-74 283.1 147 100.0
BcaC02g11514 Brassica carinata HOM05D007099 ORTHO05D009081 3.0e-73 278.5 145 98.6
C04p14510 Brassica napus HOM05D007099 ORTHO05D009081 3.0e-73 278.5 145 98.6
BolC4t23034H Brassica oleracea HOM05D007099 ORTHO05D009081 3.0e-73 278.5 145 98.6
A05p11160 Brassica napus HOM05D007099 ORTHO05D009081 3.0e-65 251.9 149 90.6
BraA05t20062Z Brassica rapa HOM05D007099 ORTHO05D009081 3.0e-65 251.9 149 90.6
BcaB02g09535 Brassica carinata HOM05D007099 ORTHO05D009081 5.3e-62 241.1 150 87.3
Sp4g16780 Schrenkiella parvula HOM05D007099 ORTHO05D009081 5.3e-62 241.1 158 81.6
BcaB06g28779 Brassica carinata HOM05D007099 ORTHO05D009081 9.0e-62 240.4 150 86.0
C04p63850 Brassica napus HOM05D007099 ORTHO05D009081 4.5e-61 238.0 149 85.9
A04p26440 Brassica napus HOM05D007099 ORTHO05D009081 1.0e-60 236.9 149 85.2
BraA04t18148Z Brassica rapa HOM05D007099 ORTHO05D009081 1.0e-60 236.9 149 85.2
BolC4t27852H Brassica oleracea HOM05D007099 ORTHO05D009081 1.7e-60 236.1 145 86.9
Thhalv10017324m.g Eutrema salsugineum HOM05D007099 ORTHO05D009081 2.5e-59 232.3 159 78.6
Carub.0004s1619 Capsella rubella HOM05D007099 ORTHO05D009081 3.6e-58 228.4 155 80.0
AL4G30490 Arabidopsis lyrata HOM05D007099 ORTHO05D009081 3.0e-57 225.3 155 78.7
CARHR128610 Cardamine hirsuta HOM05D007099 ORTHO05D009081 4.8e-55 218.0 155 78.1
AT2G34520 Arabidopsis thaliana HOM05D007099 ORTHO05D009081 6.3e-55 217.6 155 76.1
Aa31LG1G28210 Aethionema arabicum HOM05D007099 ORTHO05D009081 5.2e-33 144.8 127 63.8
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 4.1e-30 135.2 87 75.9
COL.COLO4_06718 Corchorus olitorius HOM05D007099 ORTHO05D009081 4.1e-30 135.2 87 74.7
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 4.1e-30 135.2 87 75.9
THA.LOC104825605 Tarenaya hassleriana HOM05D007099 ORTHO05D009081 7.0e-30 134.4 88 73.9
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 1.6e-29 133.3 122 60.7
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 1.3e-28 130.2 85 72.9
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 1.3e-28 130.2 85 72.9
MD03G1252400 Malus domestica HOM05D007099 ORTHO05D009081 1.7e-28 129.8 85 72.9
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 2.2e-28 129.4 93 69.9
Prupe.2G087000 Prunus persica HOM05D007099 ORTHO05D009081 2.2e-28 129.4 85 72.9
Prupe.2G087700 Prunus persica HOM05D007099 ORTHO05D009081 2.2e-28 129.4 85 72.9
Prupe.8G094900 Prunus persica HOM05D007099 ORTHO05D009081 2.2e-28 129.4 85 72.9
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 2.9e-28 129.0 87 74.7
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 2.9e-28 129.0 87 74.7
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 1.1e-27 127.1 87 71.3
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 1.1e-27 127.1 119 56.3
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 1.5e-27 126.7 119 56.3
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 1.5e-27 126.7 87 72.4
Lalb_Chr00c21g0405211 Lupinus albus HOM05D007099 ORTHO05D009081 1.9e-27 126.3 87 71.3
Lalb_Chr00c21g0405401 Lupinus albus HOM05D007099 ORTHO05D009081 1.9e-27 126.3 87 71.3
Lalb_Chr00c24g0407161 Lupinus albus HOM05D007099 ORTHO05D009081 1.9e-27 126.3 87 71.3
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 1.9e-27 126.3 87 71.3
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 2.5e-27 125.9 87 72.4
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 2.5e-27 125.9 88 68.2
Peaxi162Scf01092g00115 Petunia axillaris HOM05D007099 ORTHO05D009081 2.5e-27 125.9 87 72.4
Rhsim11G0096700 Rhododendron simsii HOM05D007099 ORTHO05D009081 2.5e-27 125.9 138 50.0
RcHm_v2.0_Chr1g0333591 Rosa chinensis HOM05D007099 ORTHO05D009081 2.5e-27 125.9 85 74.1
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 5.5e-27 124.8 89 68.5
VMungo0647G1684 Vigna mungo HOM05D007099 ORTHO05D009081 7.2e-27 124.4 87 70.1
FAN06G3861 Fragaria x ananassa HOM05D007099 ORTHO05D009081 9.4e-27 124.0 85 71.8
FAN10G1031 Fragaria x ananassa HOM05D007099 ORTHO05D009081 9.4e-27 124.0 85 71.8
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 1.2e-26 123.6 94 66.0
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 1.6e-26 123.2 87 69.0
Gorai.001G161900 Gossypium raimondii HOM05D007099 ORTHO05D009081 3.6e-26 122.1 80 73.8
RcHm_v2.0_Chr5g0056441 Rosa chinensis HOM05D007099 ORTHO05D009081 3.6e-26 122.1 85 71.8
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 3.6e-26 122.1 87 69.0
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 3.6e-26 122.1 87 69.0
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 3.6e-26 122.1 87 69.0
CANSAT56G2898 Cannabis sativa HOM05D007099 ORTHO05D009081 4.7e-26 121.7 85 70.6
FvH4_7g06080 Fragaria vesca HOM05D007099 ORTHO05D009081 4.7e-26 121.7 85 70.6
Glyma.05G091932 Glycine max HOM05D007099 ORTHO05D009081 4.7e-26 121.7 96 64.6
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 4.7e-26 121.7 86 70.9
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 8.0e-26 120.9 89 66.3
FAN16G1526 Fragaria x ananassa HOM05D007099 ORTHO05D009081 8.0e-26 120.9 85 69.4
DCAR_014524 Daucus carota HOM05D007099 ORTHO05D009081 3.0e-25 119.0 147 48.3
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 4.0e-25 118.6 86 66.3
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 4.0e-25 118.6 89 66.3
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 5.2e-25 118.2 92 60.9
Ciclev10022860m.g Citrus clementina HOM05D007099 ORTHO05D009081 6.8e-25 117.9 87 67.8
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 8.8e-25 117.5 91 61.5
FAN12G2091 Fragaria x ananassa HOM05D007099 ORTHO05D009081 8.8e-25 117.5 82 68.3
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 1.5e-24 116.7 86 67.4
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 5.7e-24 114.8 87 65.5
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 5.7e-24 114.8 87 65.5
QL04p041158 Quercus lobata HOM05D007099 ORTHO05D009081 5.7e-24 114.8 87 64.4
QL10p027581 Quercus lobata HOM05D007099 ORTHO05D009081 7.5e-24 114.4 87 63.2
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 2.8e-23 112.5 82 67.1
TPR.G27292 Trifolium pratense HOM05D007099 ORTHO05D009081 2.8e-23 112.5 76 71.1
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 3.7e-23 112.1 81 66.7
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 3.7e-23 112.1 86 64.0
FvH4_3g30490 Fragaria vesca HOM05D007099 ORTHO05D009081 6.3e-23 111.3 79 69.6
FAN11G0918 Fragaria x ananassa HOM05D007099 ORTHO05D009081 6.3e-23 111.3 79 69.6
HanXRQChr10g0308131 Helianthus annuus HOM05D007099 ORTHO05D009081 6.3e-23 111.3 87 63.2
Lsat_1_v5_gn_9_15021 Lactuca sativa HOM05D007099 ORTHO05D009081 8.3e-23 110.9 87 64.4
Cfa011223 Carpinus fangiana HOM05D007099 ORTHO05D009081 1.8e-22 109.8 87 62.1
PSO541G4216 Papaver somniferum HOM05D007099 ORTHO05D009081 2.4e-22 109.4 87 63.2
Cfa011224 Carpinus fangiana HOM05D007099 ORTHO05D009081 4.1e-22 108.6 87 62.1
Haze_02608 Corylus avellana HOM05D007099 ORTHO05D009081 5.4e-22 108.2 87 62.1
PSO675G8234 Papaver somniferum HOM05D007099 ORTHO05D009081 5.4e-22 108.2 87 62.1
SHI18971 Sapria himalayana HOM05D007099 ORTHO05D009081 9.1e-22 107.5 82 65.9
PSO541G5582 Papaver somniferum HOM05D007099 ORTHO05D009081 2.0e-21 106.3 87 60.9
ECA234G1703 Erigeron canadensis HOM05D007099 ORTHO05D009081 1.0e-20 104.0 87 58.6
PSO675G5170 Papaver somniferum HOM05D007099 ORTHO05D009081 8.6e-20 100.9 87 60.9
arahy.Tifrunner.gnm1.ann1.BT1F12 Arachis hypogaea HOM05D007099 ORTHO05D009081 1.6e-18 96.7 135 43.7
Gohir.A01G126800 Gossypium hirsutum HOM05D007099 ORTHO05D009081 2.1e-18 96.3 62 72.6
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 3.6e-18 95.5 70 67.1
ClCG01G010070 Citrullus lanatus HOM05D007099 ORTHO05D009081 1.0e-17 94.0 82 57.3
arahy.Tifrunner.gnm1.ann1.HLYH4Q Arachis hypogaea HOM05D007099 ORTHO05D009081 4.4e-16 88.6 70 60.0
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.3e-15 87.0 60 70.0
Solyc00g500363.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 1.7e-15 86.7 60 66.7
Rhsim10G0009600 Rhododendron simsii HOM05D000071 ORTHO05D000029 8.3e-15 84.3 119 45.4
Nn1g10177 Nelumbo nucifera HOM05D007099 ORTHO05D009081 9.2e-14 80.9 52 73.1
SMO134G0293 Selaginella moellendorffii HOM05D007099 ORTHO05D009081 2.7e-13 79.3 81 51.9
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 1.3e-12 77.0 54 68.5
Lalb_Chr11g0070131 Lupinus albus HOM05D007099 ORTHO05D009081 1.3e-12 77.0 52 71.2
Lalb_Chr11g0070211 Lupinus albus HOM05D007099 ORTHO05D009081 1.3e-12 77.0 52 71.2
Nitab4.5_0004300g0130 Nicotiana tabacum HOM05D002864 ORTHO05D007972 5.0e-12 75.1 52 69.2
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 2.5e-11 72.8 49 73.5
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 2.5e-11 72.8 47 74.5
Solyc09g050030.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 7.3e-11 71.2 52 63.5
Nitab4.5_0000033g0070 Nicotiana tabacum HOM05D007099 ORTHO05D009081 8.9e-09 64.3 48 66.7
Cre17.g726300 Chlamydomonas reinhardtii HOM05D007099 ORTHO05D009081 1.2e-08 63.9 90 41.1
Peaxi162Scf44104g00001 Petunia axillaris HOM05D007099 ORTHO05D009081 9.8e-08 60.8 39 69.2
A01p01790 Brassica napus HOM05D005640 ORTHO05D102632 6.4e-07 58.2 43 72.1
Lalb_Chr00c21g0405241 Lupinus albus HOM05D007099 ORTHO05D009081 8.3e-07 57.8 37 73.0
GSVIVG01018700001 Vitis vinifera HOM05D007099 ORTHO05D009081 8.3e-07 57.8 42 61.9
Pp3c2_23460 Physcomitrium patens HOM05D007099 ORTHO05D009081 1.4e-06 57.0 44 61.4


User provided reference genes

Program Settings