Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09525 Brassica carinata HOM05D007451 ORTHO05D009399 1.9e-81 305.8 163 100.0
BcaC02g11529 Brassica carinata HOM05D007451 ORTHO05D009399 6.7e-74 280.8 163 90.8
BraA05t20052Z Brassica rapa HOM05D007451 ORTHO05D009399 3.2e-68 261.9 191 76.4
Sp4g16840 Schrenkiella parvula HOM05D007451 ORTHO05D009399 5.5e-68 261.2 163 84.7
AL4G30550 Arabidopsis lyrata HOM05D007451 ORTHO05D009399 1.0e-66 256.9 163 82.2
Thhalv10017344m.g Eutrema salsugineum HOM05D007451 ORTHO05D009399 3.0e-66 255.4 163 82.8
AT2G34580 Arabidopsis thaliana HOM05D007451 ORTHO05D009399 9.7e-65 250.4 163 81.0
Carub.0004s1625 Capsella rubella HOM05D007451 ORTHO05D009399 3.7e-64 248.4 163 81.0
CARHR128670 Cardamine hirsuta HOM05D007451 ORTHO05D009399 3.2e-60 235.3 161 78.9
BolC4t23021H Brassica oleracea HOM05D005261 ORTHO05D006180 4.2e-60 235.0 138 89.1
A05p11060 Brassica napus HOM05D005261 ORTHO05D006180 4.7e-59 231.5 137 88.3
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 6.3e-40 167.9 157 59.2
C04p14410 Brassica napus HOM05D007451 ORTHO05D009399 5.3e-39 164.9 133 68.4
GSVIVG01021497001 Vitis vinifera HOM05D007451 ORTHO05D009399 7.0e-39 164.5 160 58.1
Manes.17G070400 Manihot esculenta HOM05D007451 ORTHO05D009399 1.0e-37 160.6 161 54.0
BolC4t27857H Brassica oleracea HOM05D007451 ORTHO05D009399 2.9e-37 159.1 99 86.9
CiPaw.10G091600 Carya illinoinensis HOM05D007451 ORTHO05D009399 3.8e-37 158.7 161 52.2
Potri.004G132600 Populus trichocarpa HOM05D007451 ORTHO05D009399 8.5e-37 157.5 161 52.8
Thecc.06G150100 Theobroma cacao HOM05D007451 ORTHO05D009399 5.7e-33 144.8 160 50.0
RcHm_v2.0_Chr5g0014241 Rosa chinensis HOM05D007451 ORTHO05D009399 1.7e-32 143.3 160 50.6
CANSAT35G1195 Cannabis sativa HOM05D007451 ORTHO05D009399 2.2e-32 142.9 161 48.4
CSS0045800 Camellia sinensis var. sinensis HOM05D007451 ORTHO05D009399 2.4e-31 139.4 144 52.8
HanXRQChr04g0114281 Helianthus annuus HOM05D007451 ORTHO05D009399 4.1e-31 138.7 153 51.6
Lj1C1189G10 Lonicera japonica HOM05D007451 ORTHO05D009399 5.4e-31 138.3 161 49.1
TAR624G0819 Trochodendron aralioides HOM05D007451 ORTHO05D009399 1.2e-30 137.1 160 48.1
Sabra04G0085400 Salix brachista HOM05D007451 ORTHO05D009399 1.6e-30 136.7 187 43.9
Ciclev10018276m.g Citrus clementina HOM05D007451 ORTHO05D009399 2.0e-30 136.3 160 50.6
Oeu031273.1 Olea europaea HOM05D007451 ORTHO05D009399 5.9e-30 134.8 148 53.4
Lsat_1_v5_gn_7_28421 Lactuca sativa HOM05D007451 ORTHO05D009399 1.3e-29 133.7 160 50.0
FAN21G0862 Fragaria x ananassa HOM05D007451 ORTHO05D009399 1.7e-29 133.3 180 47.8
FAN11G0575 Fragaria x ananassa HOM05D007451 ORTHO05D009399 5.0e-29 131.7 172 47.7
TWI73G0492 Tripterygium wilfordii HOM05D007451 ORTHO05D009399 5.0e-29 131.7 160 47.5
ECA246G3905 Erigeron canadensis HOM05D007451 ORTHO05D009399 8.6e-29 131.0 148 50.0
Sc17g0004890 Simmondsia chinensis HOM05D007451 ORTHO05D009399 1.1e-28 130.6 160 46.9
Nitab4.5_0003044g0100 Nicotiana tabacum HOM05D007451 ORTHO05D009399 3.3e-28 129.0 161 45.3
PSO541G4911 Papaver somniferum HOM05D007451 ORTHO05D009399 3.3e-28 129.0 160 45.0
PSO675G9053 Papaver somniferum HOM05D007451 ORTHO05D009399 3.3e-28 129.0 160 46.2
Medtr4g084470 Medicago truncatula HOM05D007451 ORTHO05D009399 5.5e-28 128.3 157 47.1
BolC4t23024H Brassica oleracea HOM05D007451 ORTHO05D009399 7.2e-28 127.9 79 83.5
Eucgr.E03355 Eucalyptus grandis HOM05D007451 ORTHO05D009399 2.1e-27 126.3 144 47.2
EL10Ac8g19670 Beta vulgaris HOM05D007451 ORTHO05D009399 2.8e-27 125.9 155 47.7
TPR.G38261 Trifolium pratense HOM05D007451 ORTHO05D009399 6.1e-27 124.8 144 47.2
CAN.G65.121 Capsicum annuum HOM05D007451 ORTHO05D009399 1.0e-26 124.0 156 44.9
EL10Ac8g19669 Beta vulgaris HOM05D007451 ORTHO05D009399 4.0e-26 122.1 155 46.5
Psat7g130000 Pisum sativum HOM05D007451 ORTHO05D009399 5.2e-26 121.7 157 45.9
arahy.Tifrunner.gnm1.ann1.ZU2BT9 Arachis hypogaea HOM05D007451 ORTHO05D009399 8.9e-26 120.9 155 43.9
VMungo0251G0908 Vigna mungo HOM05D007451 ORTHO05D009399 8.9e-26 120.9 148 47.3
Rhsim02G0158600 Rhododendron simsii HOM05D007451 ORTHO05D009399 2.6e-25 119.4 179 40.2
Gohir.A10G041200 Gossypium hirsutum HOM05D007451 ORTHO05D009399 3.4e-25 119.0 161 44.7
Gohir.D10G042000 Gossypium hirsutum HOM05D007451 ORTHO05D009399 3.4e-25 119.0 161 44.7
Gorai.011G044600 Gossypium raimondii HOM05D007451 ORTHO05D009399 3.4e-25 119.0 161 44.7
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 5.7e-25 118.2 147 49.0
Phvul.002G096800 Phaseolus vulgaris HOM05D007451 ORTHO05D009399 5.7e-25 118.2 148 47.3
arahy.Tifrunner.gnm1.ann1.Z8IVUX Arachis hypogaea HOM05D007451 ORTHO05D009399 9.8e-25 117.5 146 43.8
Cc10_g10170 Coffea canephora HOM05D007451 ORTHO05D009399 2.8e-24 115.9 144 47.9
Actinidia07699 Actinidia chinensis HOM05D007451 ORTHO05D009399 3.7e-24 115.5 137 49.6
THA.LOC104814695 Tarenaya hassleriana HOM05D007451 ORTHO05D009399 3.7e-24 115.5 146 46.6
Prupe.4G081100 Prunus persica HOM05D007451 ORTHO05D009399 4.9e-24 115.2 148 46.6
MBI07_g23439_MAGBIO Magnolia biondii HOM05D007451 ORTHO05D009399 8.3e-24 114.4 161 41.6
Eucgr.B02066 Eucalyptus grandis HOM05D007451 ORTHO05D009399 5.4e-23 111.7 144 43.8
C04p14350 Brassica napus HOM05D005261 ORTHO05D006180 7.0e-23 111.3 67 83.6
Glyma.20G018400 Glycine max HOM05D007451 ORTHO05D009399 7.0e-23 111.3 144 44.4
MD05G1283500 Malus domestica HOM05D007451 ORTHO05D009399 7.0e-23 111.3 148 45.3
Aqoxy1G01697 Aquilegia oxysepala HOM05D007451 ORTHO05D009399 1.6e-22 110.2 159 40.9
Cfa000938 Carpinus fangiana HOM05D007451 ORTHO05D009399 2.0e-22 109.8 161 41.0
Hma1.2p1_0286F.1_g114180 Hydrangea macrophylla HOM05D007451 ORTHO05D009399 3.5e-22 109.0 163 41.1
AUR62002741 Chenopodium quinoa HOM05D007451 ORTHO05D009399 4.5e-22 108.6 160 41.2
AUR62030193 Chenopodium quinoa HOM05D007451 ORTHO05D009399 1.0e-21 107.5 144 44.4
AUR62002733 Chenopodium quinoa HOM05D007451 ORTHO05D009399 2.3e-21 106.3 160 40.6
BcaB06g28783 Brassica carinata HOM05D007451 ORTHO05D009399 5.0e-21 105.1 72 73.6
QL05p057933 Quercus lobata HOM05D007451 ORTHO05D009399 6.6e-21 104.8 143 42.7
Nn4g26566 Nelumbo nucifera HOM05D007451 ORTHO05D009399 2.5e-20 102.8 161 41.0
DCAR_003911 Daucus carota HOM05D007451 ORTHO05D009399 3.3e-20 102.4 107 53.3
Nitab4.5_0003838g0080 Nicotiana tabacum HOM05D007451 ORTHO05D009399 3.3e-20 102.4 161 39.8
Gohir.D12G050550 Gossypium hirsutum HOM05D007451 ORTHO05D009399 8.0e-19 97.8 144 41.7
Gorai.008G053800 Gossypium raimondii HOM05D007451 ORTHO05D009399 8.0e-19 97.8 133 42.9
CSS0015635 Camellia sinensis var. sinensis HOM05D007451 ORTHO05D009399 3.1e-18 95.9 131 45.8
Dinv32247 Davidia involucrata HOM05D007451 ORTHO05D009399 3.1e-18 95.9 143 42.0
BcaC02g11526 Brassica carinata HOM05D007451 ORTHO05D009399 8.9e-18 94.4 59 81.4
Gorai.004G185100 Gossypium raimondii HOM05D007451 ORTHO05D009399 1.5e-17 93.6 144 41.0
FvH4_3g05500 Fragaria vesca HOM05D007451 ORTHO05D009399 7.5e-17 91.3 160 40.6
Eucgr.I02284 Eucalyptus grandis HOM05D007451 ORTHO05D009399 9.8e-17 90.9 165 37.0
Gohir.D12G174800 Gossypium hirsutum HOM05D007451 ORTHO05D009399 1.7e-16 90.1 136 41.2
Glyma.07G220100 Glycine max HOM05D007451 ORTHO05D009399 2.9e-16 89.4 148 39.9
Duzib192G0695 Durio zibethinus HOM05D007451 ORTHO05D009399 4.9e-16 88.6 145 39.3
Eucgr.H02213 Eucalyptus grandis HOM05D007451 ORTHO05D009399 9.2e-15 84.3 89 49.4
Lj4g0011610 Lotus japonicus HOM05D007451 ORTHO05D009399 4.6e-14 82.0 107 38.3
Lalb_Chr16g0385141 Lupinus albus HOM05D007451 ORTHO05D009399 5.0e-13 78.6 156 35.3
arahy.Tifrunner.gnm1.ann1.WBAN0Y Arachis hypogaea HOM05D007451 ORTHO05D009399 1.1e-10 70.9 119 35.3
Eucgr.J01485 Eucalyptus grandis HOM05D007451 ORTHO05D009399 1.8e-10 70.1 96 39.6
Zm00001eb204550 Zea mays HOM05D007451 ORTHO05D009399 2.3e-10 69.7 119 39.5
vmacro10959 Vaccinium macrocarpon HOM05D007451 ORTHO05D009399 4.4e-09 65.5 74 44.6
Eucgr.C02335 Eucalyptus grandis HOM05D007451 ORTHO05D009399 7.5e-09 64.7 81 40.7
AagrBONN_evm.TU.Sc2ySwM_228.4815 Anthoceros agrestis HOM05D007451 ORTHO05D009399 1.1e-07 60.8 147 28.6
Os02g0244000 Oryza sativa ssp. japonica HOM05D007451 ORTHO05D009399 7.1e-07 58.2 114 33.3
Haze_05609 Corylus avellana HOM05D007451 ORTHO05D009399 3.5e-06 55.8 68 41.2
MBI06_g46402_MAGBIO Magnolia biondii HOM05D000482 ORTHO05D000349 6.0e-06 55.1 94 36.2
Hund21366 Selenicereus undatus HOM05D007451 ORTHO05D009399 7.8e-06 54.7 151 30.5
Hund21547 Selenicereus undatus HOM05D007451 ORTHO05D009399 7.8e-06 54.7 144 33.3


User provided reference genes

Program Settings