Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 1.7e-48 195.7 100 100.0
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 4.7e-46 187.6 100 96.0
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 6.2e-46 187.2 100 95.0
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 6.2e-46 187.2 100 95.0
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 5.2e-45 184.1 97 99.0
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 8.9e-45 183.3 100 93.0
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 1.4e-42 176.0 100 90.0
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 2.1e-41 172.2 100 88.0
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 5.1e-40 167.5 100 84.0
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 6.8e-37 157.1 100 83.0
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 5.8e-36 154.1 91 84.6
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 1.5e-31 139.4 96 76.0
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 4.3e-31 137.9 98 68.4
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 4.2e-26 121.3 104 59.6
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 1.2e-25 119.8 100 63.0
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 1.6e-25 119.4 100 60.0
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 3.5e-25 118.2 100 60.0
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 4.6e-25 117.9 100 60.0
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 1.7e-24 115.9 64 89.1
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 2.3e-24 115.5 102 63.7
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 5.1e-24 114.4 100 56.0
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 5.1e-24 114.4 100 56.0
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 5.1e-24 114.4 100 56.0
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 5.1e-24 114.4 98 58.2
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 6.6e-24 114.0 98 56.1
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 8.7e-24 113.6 98 56.1
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 8.7e-24 113.6 98 55.1
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 1.1e-23 113.2 98 58.2
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 1.5e-23 112.8 98 57.1
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 1.9e-23 112.5 98 56.1
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 3.3e-23 111.7 98 55.1
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 4.3e-23 111.3 100 57.0
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 4.3e-23 111.3 102 57.8
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 5.6e-23 110.9 98 56.1
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 7.3e-23 110.5 98 57.1
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 9.6e-23 110.2 98 58.2
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 9.6e-23 110.2 98 55.1
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 9.6e-23 110.2 100 60.0
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 1.3e-22 109.8 100 54.0
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 1.3e-22 109.8 98 53.1
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 2.8e-22 108.6 99 54.5
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 3.6e-22 108.2 99 54.5
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 4.8e-22 107.8 98 55.1
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 6.2e-22 107.5 102 56.9
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 6.2e-22 107.5 98 56.1
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 6.2e-22 107.5 98 54.1
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 6.2e-22 107.5 98 57.1
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 6.2e-22 107.5 98 57.1
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 8.1e-22 107.1 98 58.2
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 1.1e-21 106.7 98 59.2
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 1.1e-21 106.7 99 55.6
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 1.8e-21 105.9 103 57.3
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 3.1e-21 105.1 98 54.1
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 4.0e-21 104.8 100 54.0
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 5.3e-21 104.4 102 58.8
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 5.3e-21 104.4 102 58.8
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 5.3e-21 104.4 101 55.4
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 2.0e-20 102.4 111 53.2
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 2.6e-20 102.1 101 52.5
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 3.4e-20 101.7 98 54.1
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 3.4e-20 101.7 100 52.0
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 4.5e-20 101.3 102 56.9
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 9.9e-20 100.1 100 51.0
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 1.3e-19 99.8 98 53.1
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 1.3e-19 99.8 100 52.0
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 1.7e-19 99.4 99 52.5
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 1.7e-19 99.4 98 52.0
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 2.9e-19 98.6 117 47.9
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 3.8e-19 98.2 101 54.5
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 4.9e-19 97.8 98 51.0
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 8.4e-19 97.1 101 55.4
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 8.4e-19 97.1 98 49.0
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 1.4e-18 96.3 98 48.0
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 4.2e-18 94.7 78 66.7
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 4.2e-18 94.7 98 48.0
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 5.4e-18 94.4 98 51.0
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 9.3e-18 93.6 98 49.0
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.2e-17 93.2 92 52.2
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 1.2e-17 93.2 95 52.6
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 1.2e-17 93.2 103 50.5
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 1.6e-17 92.8 101 47.5
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 2.1e-17 92.4 103 46.6
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 3.5e-17 91.7 103 45.6
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 4.6e-17 91.3 99 49.5
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 6.0e-17 90.9 98 46.9
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 7.9e-17 90.5 98 48.0
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 1.3e-16 89.7 100 46.0
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 2.3e-16 89.0 105 46.7
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 1.1e-15 86.7 103 45.6
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 5.6e-15 84.3 101 46.5
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 4.8e-14 81.3 98 45.9
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 3.1e-13 78.6 104 45.2
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 6.9e-13 77.4 106 43.4
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 6.9e-13 77.4 106 36.8
Sp2g07060 Schrenkiella parvula HOM05D003281 ORTHO05D004128 1.6e-09 66.2 35 88.6
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 1.0e-08 63.5 98 31.6
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 6.7e-08 60.8 62 48.4
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 1.5e-07 59.7 62 48.4
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 1.5e-07 59.7 103 30.1
AUR62037909 Chenopodium quinoa HOM05D006242 ORTHO05D007936 3.3e-07 58.5 64 48.4
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 1.6e-06 56.2 101 33.7


User provided reference genes

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