Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2749.2 1408 100.0
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2663.6 1410 97.4
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2662.9 1410 97.5
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2662.5 1410 97.4
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2660.9 1410 97.6
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2657.5 1410 97.2
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2585.8 1411 94.3
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2570.4 1411 94.5
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2567.0 1413 94.2
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2494.9 1377 94.3
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2446.0 1441 89.0
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2296.2 1417 84.0
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2213.0 1413 80.5
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2208.7 1413 80.8
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2207.9 1412 80.9
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2191.4 1414 79.8
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2189.1 1414 79.8
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2184.8 1413 79.7
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2180.6 1415 79.1
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2180.2 1424 78.9
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2178.7 1412 79.2
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2177.5 1413 79.2
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2175.2 1413 79.0
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2171.0 1412 78.8
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2166.7 1413 79.5
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2165.6 1413 78.9
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2164.0 1413 79.1
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2158.6 1413 78.7
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2157.5 1413 78.6
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2156.7 1412 78.6
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2148.6 1413 78.3
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2147.5 1418 77.6
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2146.7 1412 77.7
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2142.5 1413 77.8
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2140.5 1357 80.5
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2138.6 1413 77.8
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2135.5 1413 78.3
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2130.9 1415 77.1
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2124.4 1413 77.8
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2122.4 1412 76.9
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2118.6 1416 76.6
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2118.2 1415 76.6
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2112.0 1415 76.7
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2109.3 1415 76.2
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2107.8 1418 75.7
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2107.4 1414 77.0
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2105.1 1412 75.8
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2100.9 1417 75.5
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2099.3 1417 75.7
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2094.3 1505 73.0
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2092.4 1417 75.9
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2088.9 1411 75.8
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2088.9 1415 75.7
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2088.2 1413 75.9
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2085.8 1421 76.8
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2085.5 1412 76.0
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2082.8 1414 75.9
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2075.1 1414 76.2
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2069.3 1412 75.9
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2067.7 1443 74.2
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2067.0 1414 75.5
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2063.5 1425 74.9
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2063.1 1437 74.3
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2062.7 1457 74.4
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2061.2 1402 76.2
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2058.5 1413 74.9
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2055.4 1426 73.8
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2046.6 1396 75.2
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2039.6 1400 74.9
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2028.4 1508 71.1
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2028.1 1410 73.8
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2015.7 1421 74.0
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 1994.2 1283 80.0
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 1980.7 1412 72.2
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 1969.9 1238 80.0
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 1927.9 1440 70.8
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1892.5 1380 71.1
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 1887.8 1305 74.3
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 1887.5 1712 61.3
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1882.1 1379 70.7
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 1879.4 1375 71.3
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1840.9 1471 67.2
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1823.9 1206 76.7
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1808.9 1352 69.6
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1799.3 1399 66.5
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1786.5 1396 69.1
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1755.3 1405 65.1
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1743.0 1394 65.0
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1657.5 1556 59.2
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1561.2 830 95.9
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1469.9 826 92.9
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1385.5 1167 60.2
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1345.9 955 73.1
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1337.0 1402 51.0
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1303.9 1343 51.3
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1290.0 1364 49.7
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1281.9 1406 48.6
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1273.8 999 68.3
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1205.3 722 83.8
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 9.5e-310 1067.4 906 60.9
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 1.3e-306 1057.0 785 71.2
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 5.2e-292 1008.4 819 67.4
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 5.6e-286 988.4 588 83.3
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 2.9e-274 949.5 832 56.9
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 9.1e-228 795.0 615 68.9
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 7.5e-214 748.8 533 77.5
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 8.3e-205 718.8 484 75.4
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 9.5e-193 678.7 564 62.9
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 3.5e-187 660.2 529 67.1
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 1.6e-179 634.8 1487 29.5
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 4.3e-145 520.4 367 71.7
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 5.0e-125 453.8 541 49.4
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 1.4e-103 382.5 552 46.7
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 3.7e-96 357.8 300 68.7
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.4e-95 355.9 277 67.1
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 6.4e-88 330.5 219 74.4
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.3e-85 322.8 192 78.6
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 6.2e-67 260.8 431 42.0
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 3.3e-60 238.4 145 79.3
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 5.6e-52 211.1 135 75.6
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 3.1e-42 178.7 89 96.6
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 9.0e-42 177.2 128 62.5
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 1.2e-33 150.2 94 80.9
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 5.5e-31 141.4 126 64.3
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 5.5e-31 141.4 83 83.1
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 6.7e-29 134.4 146 46.6
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 3.7e-27 128.6 123 54.5
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 1.1e-26 127.1 83 68.7
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 4.5e-25 121.7 122 55.7
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 1.3e-24 120.2 138 47.8
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 8.5e-24 117.5 160 51.2
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 4.2e-23 115.2 162 42.0
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 6.1e-22 111.3 88 61.4
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 5.1e-21 108.2 68 80.9
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 2.5e-20 105.9 101 54.5
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 8.2e-19 100.9 234 35.0
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.8e-18 99.8 143 52.4
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 2.6e-17 95.9 53 88.7
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 4.5e-17 95.1 124 46.0
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 1.9e-15 89.7 89 50.6
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 3.2e-15 89.0 50 90.0
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 1.0e-13 84.0 105 55.2
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 1.1e-10 73.9 102 43.1
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 7.7e-09 67.8 52 63.5
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 7.7e-09 67.8 52 63.5
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 1.4e-07 63.5 32 100.0
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 3.2e-07 62.4 44 79.5
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 4.2e-07 62.0 54 55.6
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 7.2e-07 61.2 32 96.9


User provided reference genes

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