Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09469 Brassica carinata HOM05D006292 ORTHO05D006110 2.5e-53 211.8 107 100.0
BolC4t22939H Brassica oleracea HOM05D006292 ORTHO05D006110 2.6e-50 201.8 107 96.3
A05p10540 Brassica napus HOM05D006292 ORTHO05D006110 1.3e-49 199.5 107 95.3
BraA05t19992Z Brassica rapa HOM05D006292 ORTHO05D006110 1.3e-49 199.5 107 95.3
BcaC02g11625 Brassica carinata HOM05D006292 ORTHO05D006110 2.2e-49 198.7 107 95.3
C04p12960 Brassica napus HOM05D006292 ORTHO05D006110 2.2e-49 198.7 107 95.3
BolC4t22949H Brassica oleracea HOM05D006292 ORTHO05D006110 9.2e-48 193.4 107 93.5
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 4.9e-41 171.0 107 80.4
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 8.4e-41 170.2 107 79.4
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 1.1e-35 153.3 107 70.1
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 1.1e-35 153.3 107 70.1
BcaB06g28832 Brassica carinata HOM05D006292 ORTHO05D006110 9.9e-34 146.7 107 72.0
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 1.3e-33 146.4 107 67.3
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 6.4e-33 144.1 109 71.6
BcaC02g07728 Brassica carinata HOM05D006292 ORTHO05D006110 3.2e-32 141.7 107 70.1
BolC4t27900H Brassica oleracea HOM05D006292 ORTHO05D006110 3.2e-32 141.7 107 70.1
A04p26770 Brassica napus HOM05D006292 ORTHO05D006110 3.5e-31 138.3 107 67.3
C04p64170 Brassica napus HOM05D006292 ORTHO05D006110 3.5e-31 138.3 107 67.3
BraA04t18181Z Brassica rapa HOM05D006292 ORTHO05D006110 3.5e-31 138.3 107 67.3
Aa31LG9G15250 Aethionema arabicum HOM05D006292 ORTHO05D006110 1.2e-26 123.2 130 53.8
THA.LOC104814444 Tarenaya hassleriana HOM05D006292 ORTHO05D006110 1.0e-22 110.2 109 59.6
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 3.7e-12 75.1 116 44.0
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 1.1e-11 73.6 114 40.4
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 1.4e-11 73.2 112 43.8
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 1.8e-11 72.8 116 41.4
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 1.8e-11 72.8 105 42.9
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 3.1e-11 72.0 120 40.0
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 5.3e-11 71.2 115 38.3
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 1.5e-10 69.7 105 39.0
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 1.5e-10 69.7 104 39.4
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 1.5e-10 69.7 104 39.4
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 2.0e-10 69.3 112 38.4
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 4.5e-10 68.2 110 40.9
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 4.5e-10 68.2 110 40.9
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 4.5e-10 68.2 124 38.7
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 4.5e-10 68.2 112 37.5
BcaC02g11595 Brassica carinata HOM05D003251 ORTHO05D019972 1.0e-09 67.0 38 86.8
C04p13580 Brassica napus HOM05D000153 ORTHO05D000118 1.0e-09 67.0 38 86.8
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 1.0e-09 67.0 103 38.8
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 1.3e-09 66.6 109 36.7
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 1.7e-09 66.2 127 37.8
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 2.2e-09 65.9 122 38.5
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 2.9e-09 65.5 119 34.5
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 3.8e-09 65.1 124 37.9
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 6.5e-09 64.3 100 39.0
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 6.5e-09 64.3 99 38.4
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 8.4e-09 63.9 129 39.5
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 1.4e-08 63.2 110 38.2
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 1.9e-08 62.8 121 37.2
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 2.5e-08 62.4 118 39.8
Gohir.D12G210900 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.2e-08 62.0 113 37.2
Gorai.008G226400 Gossypium raimondii HOM05D006292 ORTHO05D006110 3.2e-08 62.0 113 37.2
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 3.2e-08 62.0 112 37.5
Ah.07g200350 Amaranthus hybridus HOM05D006292 ORTHO05D006110 4.2e-08 61.6 118 34.7
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 4.2e-08 61.6 113 35.4
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 4.2e-08 61.6 110 37.3
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 5.5e-08 61.2 113 38.9
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 5.5e-08 61.2 103 36.9
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 5.5e-08 61.2 115 38.3
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 7.1e-08 60.8 113 36.3
Glyma.01G018500 Glycine max HOM05D006292 ORTHO05D006110 7.1e-08 60.8 106 40.6
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 7.1e-08 60.8 112 38.4
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 9.3e-08 60.5 103 41.7
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 1.2e-07 60.1 134 36.6
FAN18G1495 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.2e-07 60.1 70 47.1
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 1.2e-07 60.1 105 41.9
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 1.2e-07 60.1 103 38.8
FAN04G1003 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.6e-07 59.7 70 47.1
FAN08G0524 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.6e-07 59.7 70 47.1
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 1.6e-07 59.7 107 40.2
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 1.6e-07 59.7 109 34.9
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 3.5e-07 58.5 110 36.4
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 3.5e-07 58.5 109 34.9
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 7.9e-07 57.4 103 36.9
Gohir.A12G208300 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.0e-06 57.0 113 35.4
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.3e-06 56.6 110 35.5
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 1.3e-06 56.6 103 36.9
QL12p005176 Quercus lobata HOM05D006292 ORTHO05D006110 1.3e-06 56.6 118 35.6
CiPaw.11G093500 Carya illinoinensis HOM05D006292 ORTHO05D006110 1.8e-06 56.2 100 36.0
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 2.3e-06 55.8 97 38.1
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 3.0e-06 55.5 106 36.8
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 3.9e-06 55.1 106 36.8
arahy.Tifrunner.gnm1.ann1.L0PZ9J Arachis hypogaea HOM05D006292 ORTHO05D006110 3.9e-06 55.1 94 39.4
arahy.Tifrunner.gnm1.ann1.RC41H8 Arachis hypogaea HOM05D006292 ORTHO05D006110 3.9e-06 55.1 94 39.4
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 3.9e-06 55.1 132 36.4
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 6.7e-06 54.3 64 50.0
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 6.7e-06 54.3 121 37.2
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 8.7e-06 53.9 60 46.7
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 8.7e-06 53.9 121 31.4


User provided reference genes

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